Wall clock time and date at job start Tue Mar 31 2020 14:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48492 * 109.47321 * 269.99892 * 3 2 1 5 5 H 1.48498 * 109.47172 * 30.00460 * 3 2 1 6 6 H 1.48506 * 109.46893 * 150.00212 * 3 2 1 7 7 C 1.37879 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99706 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46929 * 180.02562 * 9 7 2 11 11 C 1.38322 * 119.87561 * 90.00438 * 10 9 7 12 12 C 1.38016 * 120.11965 * 180.25698 * 11 10 9 13 13 C 1.39346 * 119.87476 * 359.48906 * 12 11 10 14 14 C 1.48370 * 120.11831 * 180.25723 * 13 12 11 15 15 C 1.39341 * 120.13078 * 130.23176 * 14 13 12 16 16 C 1.37993 * 119.89961 * 179.97438 * 15 14 13 17 17 C 1.38365 * 120.17717 * 359.97438 * 16 15 14 18 18 C 1.38255 * 120.26663 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.94824 * 180.02562 * 18 17 16 20 20 F 1.39903 * 109.47396 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.46896 * 120.00357 * 19 18 17 22 22 F 1.39905 * 109.46906 * 240.00227 * 19 18 17 23 23 C 1.38283 * 120.09547 * 359.79342 * 18 17 16 24 24 F 1.35104 * 120.08524 * 180.23195 * 23 18 17 25 25 C 1.39343 * 119.75956 * 0.48493 * 13 12 11 26 26 C 1.38017 * 119.87698 * 359.77236 * 25 13 12 27 27 H 0.97000 * 119.99642 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47120 * 60.00500 * 9 7 2 29 29 H 1.08999 * 109.47197 * 300.00549 * 9 7 2 30 30 H 1.08002 * 119.93718 * 359.97207 * 11 10 9 31 31 H 1.07998 * 120.06307 * 179.74689 * 12 11 10 32 32 H 1.07993 * 120.04715 * 359.97438 * 15 14 13 33 33 H 1.08000 * 119.91394 * 180.02562 * 16 15 14 34 34 H 1.07992 * 119.86492 * 180.02562 * 17 16 15 35 35 H 1.08004 * 120.06432 * 179.79006 * 25 13 12 36 36 H 1.07996 * 119.94599 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6779 -4.1684 1.1989 12 6 3.5788 -5.2140 1.2048 13 6 4.0292 -5.7489 -0.0005 14 6 4.9933 -6.8767 -0.0005 15 6 4.7459 -8.0084 -0.7748 16 6 5.6460 -9.0543 -0.7716 17 6 6.7937 -8.9819 -0.0020 18 6 7.0467 -7.8620 0.7681 19 6 8.2992 -7.7905 1.6031 20 9 9.0400 -8.9651 1.4343 21 9 9.0671 -6.6932 1.1989 22 9 7.9533 -7.6464 2.9511 23 6 6.1546 -6.8054 0.7695 24 9 6.4045 -5.7091 1.5185 25 6 3.5745 -5.2177 -1.2058 26 6 2.6777 -4.1686 -1.2000 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5570 0.8896 30 1 2.3253 -3.7554 2.1324 31 1 3.9308 -5.6195 2.1417 32 1 3.8510 -8.0669 -1.3765 33 1 5.4547 -9.9314 -1.3720 34 1 7.4949 -9.8032 -0.0036 35 1 3.9230 -5.6263 -2.1429 36 1 2.3249 -3.7558 -2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241157670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:18 Heat of formation + Delta-G solvation = -158.062308 kcal Electronic energy + Delta-G solvation = -26118.380790 eV Core-core repulsion = 21645.279562 eV Total energy + Delta-G solvation = -4473.101228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.44406 -49.16654 -47.90759 -47.83196 -39.76143 -38.37380 -34.04564 -32.69123 -31.71224 -30.45671 -30.07736 -26.91661 -26.37202 -23.95811 -22.79675 -22.23593 -21.76730 -20.28714 -18.81934 -18.73237 -18.58371 -17.52233 -16.56658 -16.37558 -16.01652 -15.89497 -15.15757 -14.90154 -14.70080 -14.67961 -14.51620 -14.29044 -14.25656 -14.01202 -14.00866 -13.48906 -13.39937 -12.98107 -12.85246 -12.81348 -12.59432 -12.12254 -12.00084 -11.54994 -11.35218 -11.13454 -10.81653 -10.57129 -10.35892 -9.78002 -9.60977 -9.48281 -9.13054 -8.48151 -8.43981 -7.77661 -6.09540 -4.13843 0.42960 0.63328 1.87852 1.92725 2.34087 3.03877 3.28146 3.34596 3.37179 3.39399 3.59808 3.86213 4.12986 4.25665 4.36841 4.44632 4.57474 4.67232 4.81148 5.17164 5.25011 5.37740 5.38115 5.50135 5.55094 5.76632 5.85183 5.88919 6.06591 6.08514 6.30342 6.49091 6.55623 6.87304 7.03459 7.06375 7.41181 7.56965 7.74090 7.86138 8.24457 8.91438 9.50597 11.00274 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.002887 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.029427 B = 9694.666396 C =10531.309410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.045 3.955 10 C -0.017 4.017 11 C -0.124 4.124 12 C -0.093 4.093 13 C -0.104 4.104 14 C -0.053 4.053 15 C -0.054 4.054 16 C -0.129 4.129 17 C -0.056 4.056 18 C -0.223 4.223 19 C 0.514 3.486 20 F -0.176 7.176 21 F -0.172 7.172 22 F -0.173 7.173 23 C 0.154 3.846 24 F -0.116 7.116 25 C -0.096 4.096 26 C -0.126 4.126 27 H 0.263 0.737 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.115 0.885 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.831 -20.903 -0.757 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.008 3.992 10 C -0.017 4.017 11 C -0.142 4.142 12 C -0.111 4.111 13 C -0.104 4.104 14 C -0.054 4.054 15 C -0.072 4.072 16 C -0.147 4.147 17 C -0.074 4.074 18 C -0.225 4.225 19 C 0.459 3.541 20 F -0.157 7.157 21 F -0.153 7.153 22 F -0.154 7.154 23 C 0.134 3.866 24 F -0.094 7.094 25 C -0.114 4.114 26 C -0.144 4.144 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.133 0.867 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.727 -20.727 -0.691 24.332 hybrid contribution 0.785 1.213 0.322 1.480 sum 13.511 -19.514 -0.368 23.738 Atomic orbital electron populations 1.69952 1.06047 1.26934 1.50290 1.25007 0.94895 0.99308 0.95037 0.86523 0.79883 0.83021 0.78239 1.20532 1.21101 1.19731 1.21036 0.93087 0.89736 1.51344 0.92395 1.18423 0.92591 0.89602 0.98603 1.20869 0.94878 0.94052 0.91865 1.21049 0.98184 0.96257 0.98691 1.21058 0.97295 0.96554 0.96227 1.18223 1.00283 0.97461 0.94428 1.18937 0.93075 0.96089 0.97308 1.21461 0.99106 0.90919 0.95702 1.21150 0.93827 0.99675 1.00045 1.20909 0.97638 0.95609 0.93293 1.19986 0.96817 0.98873 1.06812 1.18036 0.83702 0.73829 0.78493 1.93161 1.78862 1.48368 1.95305 1.93248 1.77359 1.54415 1.90312 1.93245 1.92057 1.95419 1.34658 1.17356 0.93836 0.82896 0.92488 1.91601 1.93751 1.50846 1.73192 1.21010 0.97463 0.96986 0.95979 1.21044 0.98260 0.96462 0.98629 0.92763 0.95109 0.95113 0.85905 0.86919 0.83768 0.84018 0.83675 0.86658 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.18 9.09 -34.44 -0.31 -14.49 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.04 1.11 5.10 -29.03 -0.15 0.97 16 10 C -0.02 -0.35 5.07 -104.56 -0.53 -0.88 16 11 C -0.12 -2.36 9.68 -39.63 -0.38 -2.74 16 12 C -0.09 -1.56 8.87 -39.25 -0.35 -1.91 16 13 C -0.10 -1.60 5.32 -104.90 -0.56 -2.16 16 14 C -0.05 -0.68 5.48 -104.84 -0.57 -1.25 16 15 C -0.05 -0.50 9.51 -39.26 -0.37 -0.88 16 16 C -0.13 -0.95 10.03 -39.62 -0.40 -1.35 16 17 C -0.06 -0.47 9.43 -39.53 -0.37 -0.84 16 18 C -0.22 -2.49 5.37 -104.60 -0.56 -3.05 16 19 C 0.51 5.90 3.03 36.01 0.11 6.01 16 20 F -0.18 -1.76 15.96 2.25 0.04 -1.72 16 21 F -0.17 -2.19 17.04 2.25 0.04 -2.15 16 22 F -0.17 -2.15 17.06 2.25 0.04 -2.11 16 23 C 0.15 2.05 6.99 -39.09 -0.27 1.77 16 24 F -0.12 -1.79 15.10 2.25 0.03 -1.76 16 25 C -0.10 -1.49 9.51 -39.25 -0.37 -1.87 16 26 C -0.13 -2.31 9.68 -39.63 -0.38 -2.70 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.11 1.70 7.79 -52.49 -0.41 1.29 16 32 H 0.14 1.10 8.04 -52.49 -0.42 0.68 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.15 0.87 7.14 -52.49 -0.37 0.49 16 35 H 0.12 1.44 8.04 -52.48 -0.42 1.02 16 36 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -29.90 334.33 -7.96 -37.85 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -3.28 Total: -2.46 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -5.58 Total: -23.80 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.15 Total: -7.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.90 -7.96 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241157670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.210 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds