Wall clock time and date at job start Tue Mar 31 2020 14:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48492 * 109.47321 * 269.99892 * 3 2 1 5 5 H 1.48498 * 109.47172 * 30.00460 * 3 2 1 6 6 H 1.48506 * 109.46893 * 150.00212 * 3 2 1 7 7 C 1.37879 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99706 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46929 * 180.02562 * 9 7 2 11 11 C 1.38322 * 119.87561 * 90.00438 * 10 9 7 12 12 C 1.38016 * 120.11965 * 180.25698 * 11 10 9 13 13 C 1.39346 * 119.87476 * 359.48906 * 12 11 10 14 14 C 1.48370 * 120.11831 * 180.25723 * 13 12 11 15 15 C 1.39341 * 120.13078 * 130.23176 * 14 13 12 16 16 C 1.37993 * 119.89961 * 179.97438 * 15 14 13 17 17 C 1.38365 * 120.17717 * 359.97438 * 16 15 14 18 18 C 1.38255 * 120.26663 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.94824 * 180.02562 * 18 17 16 20 20 F 1.39903 * 109.47396 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.46896 * 120.00357 * 19 18 17 22 22 F 1.39905 * 109.46906 * 240.00227 * 19 18 17 23 23 C 1.38283 * 120.09547 * 359.79342 * 18 17 16 24 24 F 1.35104 * 120.08524 * 180.23195 * 23 18 17 25 25 C 1.39343 * 119.75956 * 0.48493 * 13 12 11 26 26 C 1.38017 * 119.87698 * 359.77236 * 25 13 12 27 27 H 0.97000 * 119.99642 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47120 * 60.00500 * 9 7 2 29 29 H 1.08999 * 109.47197 * 300.00549 * 9 7 2 30 30 H 1.08002 * 119.93718 * 359.97207 * 11 10 9 31 31 H 1.07998 * 120.06307 * 179.74689 * 12 11 10 32 32 H 1.07993 * 120.04715 * 359.97438 * 15 14 13 33 33 H 1.08000 * 119.91394 * 180.02562 * 16 15 14 34 34 H 1.07992 * 119.86492 * 180.02562 * 17 16 15 35 35 H 1.08004 * 120.06432 * 179.79006 * 25 13 12 36 36 H 1.07996 * 119.94599 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6779 -4.1684 1.1989 12 6 3.5788 -5.2140 1.2048 13 6 4.0292 -5.7489 -0.0005 14 6 4.9933 -6.8767 -0.0005 15 6 4.7459 -8.0084 -0.7748 16 6 5.6460 -9.0543 -0.7716 17 6 6.7937 -8.9819 -0.0020 18 6 7.0467 -7.8620 0.7681 19 6 8.2992 -7.7905 1.6031 20 9 9.0400 -8.9651 1.4343 21 9 9.0671 -6.6932 1.1989 22 9 7.9533 -7.6464 2.9511 23 6 6.1546 -6.8054 0.7695 24 9 6.4045 -5.7091 1.5185 25 6 3.5745 -5.2177 -1.2058 26 6 2.6777 -4.1686 -1.2000 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5570 0.8896 30 1 2.3253 -3.7554 2.1324 31 1 3.9308 -5.6195 2.1417 32 1 3.8510 -8.0669 -1.3765 33 1 5.4547 -9.9314 -1.3720 34 1 7.4949 -9.8032 -0.0036 35 1 3.9230 -5.6263 -2.1429 36 1 2.3249 -3.7558 -2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241157670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:18 Heat of formation + Delta-G solvation = -171.292655 kcal Electronic energy + Delta-G solvation = -26118.954501 eV Core-core repulsion = 21645.279562 eV Total energy + Delta-G solvation = -4473.674939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.33833 -50.17907 -48.77163 -48.76940 -40.75848 -39.55539 -35.70895 -34.20144 -32.68546 -31.82355 -31.40536 -28.55967 -27.20315 -25.57367 -23.83570 -23.53767 -22.89747 -21.66288 -19.71572 -19.63860 -19.49143 -18.54645 -18.37008 -17.54380 -17.18018 -16.92399 -16.60619 -15.97060 -15.86641 -15.82940 -15.61402 -15.53051 -15.18762 -14.92396 -14.92011 -14.58199 -14.52910 -14.36928 -14.27884 -13.89980 -13.73111 -13.45503 -13.29921 -13.15884 -12.69492 -12.59523 -12.50745 -12.23428 -11.86477 -11.59160 -11.42933 -10.62937 -10.52296 -10.04925 -9.81964 -9.16096 -8.23015 -6.36446 -0.35082 -0.23726 0.53917 0.61333 1.38088 1.38788 1.48190 1.50490 2.26396 2.37679 2.51676 2.73159 2.93262 3.04567 3.07740 3.24379 3.42188 3.83863 3.90205 4.04361 4.11932 4.17066 4.31377 4.41280 4.60501 4.67229 4.79048 4.82065 5.03126 5.06607 5.11209 5.23390 5.32427 5.35247 5.51001 5.54641 5.65762 5.72533 6.02513 6.05301 6.19230 6.76045 7.32291 8.86008 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.002887 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.029427 B = 9694.666396 C =10531.309410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.055 3.945 10 C -0.052 4.052 11 C -0.136 4.136 12 C -0.098 4.098 13 C -0.086 4.086 14 C -0.078 4.078 15 C -0.044 4.044 16 C -0.108 4.108 17 C -0.043 4.043 18 C -0.231 4.231 19 C 0.512 3.488 20 F -0.165 7.165 21 F -0.183 7.183 22 F -0.182 7.182 23 C 0.127 3.873 24 F -0.140 7.140 25 C -0.086 4.086 26 C -0.133 4.133 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.004 0.996 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.167 0.833 33 H 0.187 0.813 34 H 0.175 0.825 35 H 0.155 0.845 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.800 -23.688 -2.331 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.018 3.982 10 C -0.052 4.052 11 C -0.154 4.154 12 C -0.116 4.116 13 C -0.086 4.086 14 C -0.079 4.079 15 C -0.062 4.062 16 C -0.126 4.126 17 C -0.061 4.061 18 C -0.234 4.234 19 C 0.458 3.542 20 F -0.146 7.146 21 F -0.165 7.165 22 F -0.164 7.164 23 C 0.108 3.892 24 F -0.118 7.118 25 C -0.104 4.104 26 C -0.151 4.151 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.022 0.978 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.185 0.815 33 H 0.204 0.796 34 H 0.192 0.808 35 H 0.172 0.828 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.701 -23.525 -2.265 27.833 hybrid contribution 0.263 1.850 0.798 2.032 sum 14.964 -21.675 -1.467 26.379 Atomic orbital electron populations 1.70066 1.07556 1.28011 1.51133 1.25889 0.95770 1.02985 0.94519 0.85470 0.78513 0.78560 0.78684 1.19438 1.20340 1.19409 1.21357 0.92990 0.91325 1.51202 0.93015 1.18140 0.92927 0.91013 0.96142 1.20532 0.96311 0.94518 0.93855 1.21002 0.99242 0.97399 0.97757 1.21195 0.96648 0.95935 0.97792 1.18527 0.99153 0.97328 0.93628 1.18860 0.92713 0.96678 0.99602 1.21787 1.00133 0.89910 0.94349 1.21638 0.92072 1.00058 0.98819 1.21391 0.98286 0.94909 0.91465 1.20073 0.96244 0.99420 1.07625 1.18143 0.84026 0.73803 0.78193 1.93176 1.78668 1.47577 1.95209 1.93224 1.77720 1.55163 1.90370 1.93224 1.92151 1.95492 1.35517 1.17648 0.95116 0.83128 0.93347 1.91538 1.94039 1.52181 1.74045 1.21312 0.95916 0.95453 0.97727 1.21109 0.99004 0.97408 0.97538 0.92471 0.97239 0.97815 0.86877 0.85717 0.81502 0.79552 0.80788 0.82754 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.53 -30.60 9.09 25.60 0.23 -30.37 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.05 2.92 5.10 29.10 0.15 3.07 16 10 C -0.05 -2.29 5.07 -19.82 -0.10 -2.39 16 11 C -0.14 -5.44 9.68 22.24 0.22 -5.23 16 12 C -0.10 -3.29 8.87 22.48 0.20 -3.09 16 13 C -0.09 -2.53 5.32 -20.05 -0.11 -2.64 16 14 C -0.08 -1.77 5.48 -20.00 -0.11 -1.88 16 15 C -0.04 -0.61 9.51 22.48 0.21 -0.40 16 16 C -0.11 -0.94 10.03 22.24 0.22 -0.72 16 17 C -0.04 -0.51 9.43 22.30 0.21 -0.30 16 18 C -0.23 -4.58 5.37 -19.85 -0.11 -4.69 16 19 C 0.51 10.97 3.03 71.24 0.22 11.19 16 20 F -0.17 -2.88 15.96 44.97 0.72 -2.16 16 21 F -0.18 -4.54 17.04 44.97 0.77 -3.78 16 22 F -0.18 -4.44 17.06 44.97 0.77 -3.67 16 23 C 0.13 3.18 6.99 22.59 0.16 3.34 16 24 F -0.14 -4.34 15.10 44.97 0.68 -3.66 16 25 C -0.09 -2.52 9.51 22.48 0.21 -2.30 16 26 C -0.13 -4.91 9.68 22.24 0.22 -4.70 16 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.01 0.52 8.08 -2.38 -0.02 0.50 16 29 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 30 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.12 3.82 7.79 -2.91 -0.02 3.80 16 32 H 0.17 1.59 8.04 -2.91 -0.02 1.57 16 33 H 0.19 0.09 8.06 -2.91 -0.02 0.06 16 34 H 0.17 1.08 7.14 -2.91 -0.02 1.06 16 35 H 0.15 3.26 8.04 -2.91 -0.02 3.24 16 36 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -69.10 334.33 8.65 -60.44 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.13 Total: 1.92 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 2.28 Total: -40.25 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 9 Polarization: -16.20 SS G_CDS: 2.93 Total: -13.27 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.10 8.65 -60.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241157670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.848 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds