Wall clock time and date at job start Tue Mar 31 2020 14:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86804 * 120.00006 * 2 1 4 4 H 1.48493 * 109.47054 * 240.00000 * 3 2 1 5 5 H 1.48505 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46762 * 119.99922 * 3 2 1 7 7 C 1.38634 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99478 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.35671 * 116.99890 * 185.07610 * 9 7 2 11 11 C 1.38746 * 120.14023 * 354.29158 * 10 9 7 12 12 C 1.38119 * 120.05531 * 179.70100 * 11 10 9 13 13 C 1.38446 * 120.32256 * 0.28493 * 12 11 10 14 14 C 1.38016 * 120.27184 * 359.96856 * 13 12 11 15 15 C 1.39298 * 119.94631 * 0.02911 * 14 13 12 16 16 C 1.48265 * 120.16416 * 179.97438 * 15 14 13 17 17 C 1.39255 * 120.45674 * 64.71907 * 16 15 14 18 18 N 1.31787 * 120.67112 * 179.75306 * 17 16 15 19 19 C 1.32467 * 121.75562 * 0.54001 * 18 17 16 20 20 N 1.38945 * 119.56800 * 179.75386 * 19 18 17 21 21 C 1.39200 * 120.86150 * 359.72398 * 19 18 17 22 22 C 1.38087 * 119.23111 * 0.02562 * 21 19 18 23 23 C 1.50707 * 120.80150 * 179.97438 * 22 21 19 24 24 F 1.39902 * 109.46610 * 0.02562 * 23 22 21 25 25 F 1.39895 * 109.47036 * 120.02498 * 23 22 21 26 26 F 1.39895 * 109.46923 * 240.02733 * 23 22 21 27 27 H 0.97002 * 119.99702 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96684 * 359.97438 * 11 10 9 29 29 H 1.07992 * 119.83969 * 180.25527 * 12 11 10 30 30 H 1.08001 * 119.86157 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.02826 * 180.02562 * 14 13 12 32 32 H 1.07997 * 119.66982 * 0.02562 * 17 16 15 33 33 H 0.97001 * 119.99851 * 179.97438 * 20 19 18 34 34 H 0.96996 * 120.00054 * 359.96961 * 20 19 18 35 35 H 1.08002 * 120.38194 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3347 -2.3682 -0.0005 10 6 2.0696 -3.5036 0.1059 11 6 3.4556 -3.4406 0.0894 12 6 4.2020 -4.5970 0.2040 13 6 3.5743 -5.8245 0.3300 14 6 2.1965 -5.9033 0.3427 15 6 1.4326 -4.7441 0.2279 16 6 -0.0479 -4.8233 0.2405 17 6 -0.7217 -5.2610 1.3778 18 7 -2.0378 -5.3284 1.3952 19 6 -2.7669 -4.9965 0.3402 20 7 -4.1516 -5.0897 0.4070 21 6 -2.1639 -4.5550 -0.8342 22 6 -0.7873 -4.4650 -0.8928 23 6 -0.0975 -3.9920 -2.1465 24 9 -1.0553 -3.6984 -3.1231 25 9 0.6475 -2.8422 -1.8634 26 9 0.7553 -4.9963 -2.6167 27 1 -0.4850 0.8401 -0.0004 28 1 3.9510 -2.4860 -0.0088 29 1 5.2806 -4.5435 0.1949 30 1 4.1653 -6.7240 0.4196 31 1 1.7109 -6.8629 0.4416 32 1 -0.1605 -5.5441 2.2559 33 1 -4.6916 -4.8479 -0.3617 34 1 -4.5783 -5.3965 1.2222 35 1 -2.7659 -4.2868 -1.6898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241682831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:12 Heat of formation + Delta-G solvation = -98.508357 kcal Electronic energy + Delta-G solvation = -28540.283657 eV Core-core repulsion = 24089.684843 eV Total energy + Delta-G solvation = -4450.598814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.39253 -47.02638 -46.63882 -40.08371 -38.82442 -36.39344 -34.75084 -32.83725 -32.27026 -31.08154 -29.03451 -27.61740 -26.08808 -25.31347 -23.40419 -21.97136 -21.47118 -20.69519 -18.21630 -18.02854 -17.94111 -17.63192 -17.11394 -16.82477 -15.75987 -15.44327 -14.77404 -14.62945 -14.52426 -14.18809 -14.10940 -13.90864 -13.74015 -13.56340 -13.47875 -13.29030 -13.26154 -12.82819 -12.59043 -12.36484 -11.97345 -11.69173 -11.51699 -11.31531 -10.89115 -10.81883 -10.76180 -10.52179 -10.38463 -9.65072 -9.51552 -9.27751 -8.81934 -8.22298 -7.57491 -7.12831 -6.44034 -4.00523 1.30289 1.49577 2.15497 2.37779 3.13626 3.14556 3.16692 3.26979 3.65067 3.96118 4.04287 4.33107 4.51560 4.65043 5.03164 5.07846 5.14481 5.18119 5.30633 5.33219 5.55425 5.67595 5.81390 5.88976 5.95639 6.05220 6.28210 6.40579 6.67199 6.70589 6.81649 7.06264 7.19380 7.34733 7.35637 7.37560 7.55918 7.78038 7.98542 8.38915 9.01119 9.68677 10.72350 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.006684 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.825081 B = 4188.161296 C = 5189.844469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.045 3.955 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.090 0.910 9 O -0.150 6.150 10 C 0.170 3.830 11 C -0.234 4.234 12 C -0.063 4.063 13 C -0.218 4.218 14 C -0.047 4.047 15 C -0.153 4.153 16 C -0.063 4.063 17 C 0.157 3.843 18 N -0.526 5.526 19 C 0.393 3.607 20 N -0.854 5.854 21 C -0.191 4.191 22 C -0.070 4.070 23 C 0.497 3.503 24 F -0.190 7.190 25 F -0.123 7.123 26 F -0.181 7.181 27 H 0.269 0.731 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.164 0.836 33 H 0.406 0.594 34 H 0.402 0.598 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -9.213 -1.084 9.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.108 0.892 9 O -0.052 6.052 10 C 0.114 3.886 11 C -0.253 4.253 12 C -0.082 4.082 13 C -0.237 4.237 14 C -0.066 4.066 15 C -0.155 4.155 16 C -0.068 4.068 17 C -0.001 4.001 18 N -0.243 5.243 19 C 0.156 3.844 20 N -0.398 5.398 21 C -0.216 4.216 22 C -0.079 4.079 23 C 0.443 3.557 24 F -0.172 7.172 25 F -0.103 7.103 26 F -0.162 7.162 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.181 0.819 33 H 0.236 0.764 34 H 0.232 0.768 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.693 -9.219 -0.405 9.940 hybrid contribution 0.677 1.323 -0.973 1.776 sum -3.016 -7.896 -1.378 8.564 Atomic orbital electron populations 1.70038 1.05838 1.27606 1.45166 1.25214 0.95757 0.98616 0.96484 0.85859 0.78807 0.80093 0.79170 1.19527 1.20355 1.19543 1.21253 0.91734 0.80931 1.52716 0.89232 1.84091 1.33868 1.11087 1.76121 1.19296 0.90143 0.87494 0.91678 1.21092 0.93447 0.99156 1.11586 1.20832 0.98521 0.92398 0.96436 1.20482 0.94035 0.97017 1.12192 1.20641 0.93439 0.95654 0.96841 1.17539 0.89780 0.91689 1.16514 1.18985 0.93644 1.01083 0.93042 1.22521 0.87936 0.93414 0.96218 1.67075 1.07973 1.21299 1.27960 1.18080 0.85882 0.91512 0.88893 1.42026 1.02185 1.76212 1.19378 1.20956 0.93716 1.07401 0.99485 1.20182 0.93920 1.00044 0.93750 1.18303 0.77385 0.77173 0.82877 1.93101 1.64578 1.93716 1.65769 1.93575 1.75996 1.48426 1.92330 1.93172 1.71965 1.61388 1.89721 0.92097 0.85364 0.87452 0.87426 0.86932 0.81929 0.76402 0.76845 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.33 13.67 55.48 0.76 -23.57 16 2 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.53 9.27 30.88 0.29 -10.24 16 8 H 0.09 2.26 5.21 -52.48 -0.27 1.98 16 9 O -0.15 -4.02 5.81 0.34 0.00 -4.02 16 10 C 0.17 3.96 5.37 -38.74 -0.21 3.75 16 11 C -0.23 -4.97 9.16 -39.44 -0.36 -5.33 16 12 C -0.06 -1.14 10.03 -39.55 -0.40 -1.54 16 13 C -0.22 -3.68 10.03 -39.59 -0.40 -4.08 16 14 C -0.05 -0.84 9.73 -39.27 -0.38 -1.22 16 15 C -0.15 -3.15 4.21 -104.73 -0.44 -3.59 16 16 C -0.06 -1.25 4.94 -104.75 -0.52 -1.77 16 17 C 0.16 2.80 10.89 -17.19 -0.19 2.61 16 18 N -0.53 -9.11 10.38 -12.15 -0.13 -9.23 16 19 C 0.39 6.32 7.74 -154.99 -1.20 5.13 16 20 N -0.85 -9.75 9.07 31.14 0.28 -9.47 16 21 C -0.19 -3.30 9.31 -39.28 -0.37 -3.66 16 22 C -0.07 -1.39 5.32 -104.02 -0.55 -1.95 16 23 C 0.50 10.45 2.90 36.01 0.10 10.55 16 24 F -0.19 -3.69 16.07 2.25 0.04 -3.66 16 25 F -0.12 -3.06 11.79 2.25 0.03 -3.04 16 26 F -0.18 -3.65 16.62 2.25 0.04 -3.62 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 33 H 0.41 3.56 8.82 -40.82 -0.36 3.20 16 34 H 0.40 3.97 8.95 -40.82 -0.37 3.60 16 35 H 0.14 2.09 7.25 -52.49 -0.38 1.71 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -31.14 315.09 -6.47 -37.61 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -2.50 Total: 9.16 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -4.71 Total: -10.24 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.91 Total: -42.28 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: 0.00 Total: -4.02 kcal Atomic # 9 Polarization: -10.41 SS G_CDS: 0.10 Total: -10.31 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.14 -6.47 -37.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241682831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.897 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds