Wall clock time and date at job start Tue Mar 31 2020 14:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86804 * 120.00006 * 2 1 4 4 H 1.48493 * 109.47054 * 240.00000 * 3 2 1 5 5 H 1.48505 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46762 * 119.99922 * 3 2 1 7 7 C 1.38634 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99478 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.35671 * 116.99890 * 185.07610 * 9 7 2 11 11 C 1.38746 * 120.14023 * 354.29158 * 10 9 7 12 12 C 1.38119 * 120.05531 * 179.70100 * 11 10 9 13 13 C 1.38446 * 120.32256 * 0.28493 * 12 11 10 14 14 C 1.38016 * 120.27184 * 359.96856 * 13 12 11 15 15 C 1.39298 * 119.94631 * 0.02911 * 14 13 12 16 16 C 1.48265 * 120.16416 * 179.97438 * 15 14 13 17 17 C 1.39255 * 120.45674 * 64.71907 * 16 15 14 18 18 N 1.31787 * 120.67112 * 179.75306 * 17 16 15 19 19 C 1.32467 * 121.75562 * 0.54001 * 18 17 16 20 20 N 1.38945 * 119.56800 * 179.75386 * 19 18 17 21 21 C 1.39200 * 120.86150 * 359.72398 * 19 18 17 22 22 C 1.38087 * 119.23111 * 0.02562 * 21 19 18 23 23 C 1.50707 * 120.80150 * 179.97438 * 22 21 19 24 24 F 1.39902 * 109.46610 * 0.02562 * 23 22 21 25 25 F 1.39895 * 109.47036 * 120.02498 * 23 22 21 26 26 F 1.39895 * 109.46923 * 240.02733 * 23 22 21 27 27 H 0.97002 * 119.99702 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96684 * 359.97438 * 11 10 9 29 29 H 1.07992 * 119.83969 * 180.25527 * 12 11 10 30 30 H 1.08001 * 119.86157 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.02826 * 180.02562 * 14 13 12 32 32 H 1.07997 * 119.66982 * 0.02562 * 17 16 15 33 33 H 0.97001 * 119.99851 * 179.97438 * 20 19 18 34 34 H 0.96996 * 120.00054 * 359.96961 * 20 19 18 35 35 H 1.08002 * 120.38194 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3347 -2.3682 -0.0005 10 6 2.0696 -3.5036 0.1059 11 6 3.4556 -3.4406 0.0894 12 6 4.2020 -4.5970 0.2040 13 6 3.5743 -5.8245 0.3300 14 6 2.1965 -5.9033 0.3427 15 6 1.4326 -4.7441 0.2279 16 6 -0.0479 -4.8233 0.2405 17 6 -0.7217 -5.2610 1.3778 18 7 -2.0378 -5.3284 1.3952 19 6 -2.7669 -4.9965 0.3402 20 7 -4.1516 -5.0897 0.4070 21 6 -2.1639 -4.5550 -0.8342 22 6 -0.7873 -4.4650 -0.8928 23 6 -0.0975 -3.9920 -2.1465 24 9 -1.0553 -3.6984 -3.1231 25 9 0.6475 -2.8422 -1.8634 26 9 0.7553 -4.9963 -2.6167 27 1 -0.4850 0.8401 -0.0004 28 1 3.9510 -2.4860 -0.0088 29 1 5.2806 -4.5435 0.1949 30 1 4.1653 -6.7240 0.4196 31 1 1.7109 -6.8629 0.4416 32 1 -0.1605 -5.5441 2.2559 33 1 -4.6916 -4.8479 -0.3617 34 1 -4.5783 -5.3965 1.2222 35 1 -2.7659 -4.2868 -1.6898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241682831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:11 Heat of formation + Delta-G solvation = -117.683788 kcal Electronic energy + Delta-G solvation = -28541.115166 eV Core-core repulsion = 24089.684843 eV Total energy + Delta-G solvation = -4451.430323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.04362 -48.63986 -48.37693 -41.47157 -40.39546 -38.01384 -35.99779 -34.27089 -34.09894 -32.49300 -30.57035 -29.02875 -27.63244 -27.17119 -24.79007 -23.44748 -23.07364 -22.16809 -19.76519 -19.61595 -19.54799 -19.29367 -18.76415 -18.11648 -17.17960 -16.89668 -16.34885 -16.27343 -15.97036 -15.78441 -15.60845 -15.37151 -15.23602 -15.14649 -15.01156 -14.89346 -14.69853 -14.56094 -14.27010 -14.04733 -13.49836 -13.39879 -13.10874 -12.96420 -12.42969 -12.38796 -12.25585 -12.16053 -11.69925 -11.18592 -11.04437 -10.75165 -10.68760 -9.67739 -8.99806 -8.60585 -8.37505 -6.00300 -0.12434 0.11974 0.66510 0.84448 1.35803 1.45526 1.49252 1.70573 2.20457 2.47604 2.67810 2.78129 2.90717 3.11626 3.24041 3.49865 3.65822 3.74939 3.76323 3.99573 4.18719 4.27787 4.37622 4.55728 4.59773 4.66565 4.76666 4.99433 5.15180 5.21827 5.31788 5.40560 5.71265 5.75436 5.83106 6.08804 6.26658 6.29189 6.48972 7.07793 7.22042 7.88850 8.83130 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.006684 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.825081 B = 4188.161296 C = 5189.844469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.013 4.013 3 Si 1.003 2.997 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.405 4.405 8 H 0.094 0.906 9 O -0.188 6.188 10 C 0.135 3.865 11 C -0.254 4.254 12 C -0.064 4.064 13 C -0.196 4.196 14 C -0.050 4.050 15 C -0.153 4.153 16 C -0.093 4.093 17 C 0.160 3.840 18 N -0.534 5.534 19 C 0.397 3.603 20 N -0.830 5.830 21 C -0.198 4.198 22 C -0.087 4.087 23 C 0.494 3.506 24 F -0.184 7.184 25 F -0.149 7.149 26 F -0.179 7.179 27 H 0.267 0.733 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.184 0.816 33 H 0.421 0.579 34 H 0.414 0.586 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -11.350 -0.495 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.212 4.212 3 Si 0.824 3.176 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.482 4.482 8 H 0.111 0.889 9 O -0.093 6.093 10 C 0.083 3.917 11 C -0.273 4.273 12 C -0.082 4.082 13 C -0.214 4.214 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.098 4.098 17 C 0.002 3.998 18 N -0.251 5.251 19 C 0.158 3.842 20 N -0.375 5.375 21 C -0.223 4.223 22 C -0.097 4.097 23 C 0.439 3.561 24 F -0.166 7.166 25 F -0.130 7.130 26 F -0.161 7.161 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.201 0.799 33 H 0.254 0.746 34 H 0.245 0.755 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.196 -11.411 0.182 11.852 hybrid contribution 0.537 1.627 -1.160 2.069 sum -2.658 -9.785 -0.978 10.187 Atomic orbital electron populations 1.70183 1.07531 1.28096 1.48543 1.26261 0.96633 1.01941 0.96334 0.84863 0.77570 0.75583 0.79598 1.18767 1.20013 1.18437 1.21623 0.92159 0.81922 1.52447 0.88880 1.84086 1.34539 1.11543 1.79098 1.19857 0.91212 0.87779 0.92833 1.21242 0.93174 1.00218 1.12700 1.21228 1.00201 0.91612 0.95126 1.21051 0.94060 0.98046 1.08286 1.21104 0.93990 0.95994 0.95667 1.17879 0.90698 0.91551 1.15362 1.19110 0.93568 1.03193 0.93924 1.22811 0.88343 0.92503 0.96094 1.67185 1.07776 1.21964 1.28192 1.18312 0.87477 0.90243 0.88161 1.42010 1.00440 1.74509 1.20579 1.21191 0.93011 1.07400 1.00730 1.20269 0.95069 1.00957 0.93361 1.18507 0.77366 0.76453 0.83740 1.93096 1.64167 1.93692 1.65634 1.93531 1.76804 1.50021 1.92608 1.93155 1.72071 1.61049 1.89790 0.92409 0.86556 0.84046 0.83139 0.83717 0.79914 0.74624 0.75491 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.39 13.67 21.61 0.30 -54.09 16 2 C -0.01 -0.73 5.49 84.83 0.47 -0.26 16 3 Si 1.00 43.18 29.55 68.60 2.03 45.20 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.40 -22.94 9.27 67.91 0.63 -22.31 16 8 H 0.09 4.94 5.21 -2.91 -0.02 4.92 16 9 O -0.19 -10.58 5.81 -21.69 -0.13 -10.70 16 10 C 0.14 6.48 5.37 22.82 0.12 6.60 16 11 C -0.25 -10.88 9.16 22.36 0.20 -10.67 16 12 C -0.06 -2.12 10.03 22.29 0.22 -1.90 16 13 C -0.20 -5.82 10.03 22.27 0.22 -5.60 16 14 C -0.05 -1.61 9.73 22.47 0.22 -1.39 16 15 C -0.15 -6.23 4.21 -19.93 -0.08 -6.31 16 16 C -0.09 -3.69 4.94 -19.94 -0.10 -3.79 16 17 C 0.16 5.55 10.89 84.94 0.93 6.47 16 18 N -0.53 -17.67 10.38 -192.36 -2.00 -19.67 16 19 C 0.40 12.16 7.74 133.08 1.03 13.19 16 20 N -0.83 -16.92 9.07 -55.39 -0.50 -17.42 16 21 C -0.20 -6.74 9.31 22.47 0.21 -6.53 16 22 C -0.09 -3.53 5.32 -19.48 -0.10 -3.63 16 23 C 0.49 21.29 2.90 71.24 0.21 21.50 16 24 F -0.18 -7.31 16.07 44.97 0.72 -6.58 16 25 F -0.15 -7.82 11.79 44.97 0.53 -7.29 16 26 F -0.18 -7.31 16.62 44.97 0.75 -6.57 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 30 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 32 H 0.18 5.33 8.06 -2.91 -0.02 5.31 16 33 H 0.42 6.24 8.82 -92.71 -0.82 5.43 16 34 H 0.41 7.01 8.95 -92.71 -0.83 6.18 16 35 H 0.16 4.58 7.25 -2.91 -0.02 4.56 16 Total: -1.00 -71.61 315.09 5.43 -66.18 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.44 Total: 25.58 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.17 Total: -14.64 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -2.20 Total: -91.18 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.13 Total: -10.70 kcal Atomic # 9 Polarization: -22.44 SS G_CDS: 2.00 Total: -20.44 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.61 5.43 -66.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241682831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.505 kcal (2) G-P(sol) polarization free energy of solvation -71.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds