Wall clock time and date at job start Tue Mar 31 2020 13:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35884 * 116.99788 * 2 1 4 4 C 1.38801 * 119.90473 * 179.97438 * 3 2 1 5 5 C 1.38139 * 120.10111 * 179.97438 * 4 3 2 6 6 F 1.35094 * 120.04929 * 179.97438 * 5 4 3 7 7 C 1.39621 * 119.89617 * 359.97438 * 5 4 3 8 8 C 1.48228 * 120.08973 * 179.97438 * 7 5 4 9 9 C 1.39317 * 120.13601 * 90.02606 * 8 7 5 10 10 C 1.37994 * 119.96423 * 179.97438 * 9 8 7 11 11 C 1.38666 * 120.24157 * 359.97438 * 10 9 8 12 12 F 1.35104 * 119.85348 * 179.97438 * 11 10 9 13 13 C 1.38339 * 120.28088 * 359.73152 * 11 10 9 14 14 C 1.38688 * 120.02928 * 0.54827 * 13 11 10 15 15 O 1.35685 * 120.12133 * 179.72665 * 14 13 11 16 16 C 1.34809 * 117.00099 * 5.59729 * 15 14 13 17 17 H 1.07999 * 119.99835 * 354.93854 * 16 15 14 18 18 C 1.38625 * 119.99933 * 174.93606 * 16 15 14 19 19 N 1.31573 * 120.00133 * 359.72737 * 18 16 15 20 20 Si 1.86808 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47042 * 89.99858 * 20 18 16 22 22 H 1.48497 * 109.47015 * 210.00168 * 20 18 16 23 23 H 1.48505 * 109.46906 * 329.99985 * 20 18 16 24 24 C 1.39624 * 119.80995 * 0.25364 * 7 5 4 25 25 F 1.35099 * 120.04550 * 179.74986 * 24 7 5 26 26 C 1.38133 * 119.90110 * 359.49222 * 24 7 5 27 27 H 1.08996 * 109.47693 * 299.99655 * 1 2 3 28 28 H 1.09006 * 109.47107 * 59.99892 * 1 2 3 29 29 H 1.09007 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.94692 * 359.97438 * 4 3 2 31 31 H 1.07996 * 120.02243 * 359.94880 * 9 8 7 32 32 H 1.07997 * 119.87425 * 179.97438 * 10 9 8 33 33 H 1.08005 * 119.98537 * 180.27878 * 13 11 10 34 34 H 0.97001 * 119.99570 * 180.02562 * 19 18 16 35 35 H 1.08000 * 119.95065 * 180.27888 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 3.4321 1.2811 0.0005 5 6 4.0634 2.5098 0.0000 6 9 5.4126 2.5771 0.0011 7 6 3.3048 3.6820 -0.0016 8 6 3.9778 5.0027 -0.0016 9 6 4.2963 5.6254 -1.2065 10 6 4.9223 6.8552 -1.2023 11 6 5.2358 7.4752 -0.0023 12 9 5.8492 8.6790 -0.0074 13 6 4.9187 6.8688 1.1999 14 6 4.2947 5.6302 1.2092 15 8 3.9879 5.0311 2.3873 16 6 4.2097 5.7417 3.5113 17 1 4.6897 6.7074 3.4537 18 6 3.8218 5.2327 4.7410 19 7 3.2321 4.0585 4.8106 20 14 4.1286 6.2176 6.2984 21 1 2.9590 7.0913 6.5700 22 1 4.3286 5.2891 7.4399 23 1 5.3422 7.0553 6.1232 24 6 1.9106 3.6065 0.0027 25 9 1.1719 4.7377 0.0062 26 6 1.2877 2.3736 -0.0021 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0180 0.3738 0.0014 31 1 4.0538 5.1459 -2.1432 32 1 5.1689 7.3364 -2.1372 33 1 5.1610 7.3581 2.1318 34 1 2.9604 3.7026 5.6710 35 1 0.2094 2.3143 -0.0034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241693283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:52 Heat of formation + Delta-G solvation = -144.950965 kcal Electronic energy + Delta-G solvation = -27184.187207 eV Core-core repulsion = 22699.281740 eV Total energy + Delta-G solvation = -4484.905467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.58473 -48.56308 -48.34151 -39.94988 -39.13262 -37.02259 -36.20258 -32.44334 -31.61419 -30.31202 -29.42746 -28.19904 -26.94574 -25.49844 -23.02297 -22.46130 -21.92327 -20.91741 -18.60104 -18.33539 -17.56905 -17.30047 -16.33082 -16.07959 -16.00993 -15.56922 -15.52404 -15.27406 -15.05928 -15.02935 -14.85381 -14.48338 -14.31955 -14.28528 -13.60947 -13.46728 -13.33349 -12.73618 -12.61718 -12.33965 -12.12847 -11.95518 -11.72014 -11.46144 -11.21086 -11.07390 -10.84077 -10.78725 -10.57195 -10.46307 -9.67832 -8.96482 -8.54714 -8.16450 -8.03442 -7.46077 -6.57950 -4.17680 1.24167 1.33197 1.75746 2.11236 3.07421 3.07556 3.08428 3.13166 3.59423 3.86173 4.19340 4.29530 4.62895 4.79881 4.92401 4.95127 4.97929 5.04742 5.09131 5.14121 5.20213 5.32977 5.44906 5.51287 5.69140 5.99455 6.05394 6.13701 6.23497 6.27116 6.37807 6.63311 6.78702 6.78884 6.94388 6.96824 7.20475 7.31392 7.57355 7.84495 8.86084 9.49468 10.58157 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009617 B = 0.005784 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.900184 B = 4839.964828 C = 6698.037127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.179 3.821 4 C -0.201 4.201 5 C 0.186 3.814 6 F -0.120 7.120 7 C -0.110 4.110 8 C -0.148 4.148 9 C -0.023 4.023 10 C -0.249 4.249 11 C 0.150 3.850 12 F -0.150 7.150 13 C -0.270 4.270 14 C 0.194 3.806 15 O -0.154 6.154 16 C -0.397 4.397 17 H 0.095 0.905 18 C 0.045 3.955 19 N -0.851 5.851 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C 0.188 3.812 25 F -0.122 7.122 26 C -0.257 4.257 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.147 0.853 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.272 0.728 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -4.869 -9.698 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.133 3.867 4 C -0.221 4.221 5 C 0.166 3.834 6 F -0.098 7.098 7 C -0.112 4.112 8 C -0.150 4.150 9 C -0.041 4.041 10 C -0.269 4.269 11 C 0.131 3.869 12 F -0.129 7.129 13 C -0.290 4.290 14 C 0.138 3.862 15 O -0.055 6.055 16 C -0.473 4.473 17 H 0.112 0.888 18 C -0.161 4.161 19 N -0.484 5.484 20 Si 0.766 3.234 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C 0.168 3.832 25 F -0.100 7.100 26 C -0.277 4.277 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.164 0.836 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.091 -5.372 -9.418 11.588 hybrid contribution 0.130 1.144 0.957 1.497 sum -3.961 -4.228 -8.461 10.254 Atomic orbital electron populations 1.23128 0.78016 1.04035 1.01862 1.86064 1.21700 1.26111 1.88358 1.18120 0.90985 0.83720 0.93838 1.20056 0.92271 0.97493 1.12281 1.16899 0.77145 0.91970 0.97367 1.91526 1.28114 1.97059 1.93078 1.18316 0.91183 0.92931 1.08737 1.17373 1.10880 0.95424 0.91278 1.20486 0.94566 0.93239 0.95827 1.20421 1.11582 0.98753 0.96127 1.17523 0.94377 0.80657 0.94347 1.91423 1.80681 1.43200 1.97555 1.20971 1.11302 0.99038 0.97708 1.18943 0.90817 0.89485 0.87005 1.83990 1.71169 1.39654 1.10677 1.21399 1.40959 1.02922 0.82005 0.88773 1.25318 0.95703 0.96479 0.98605 1.70051 1.35637 1.16281 1.26419 0.85689 0.79238 0.78894 0.79566 1.19680 1.20073 1.18975 1.16980 0.87565 0.81686 0.96920 1.91522 1.76177 1.49274 1.93031 1.20979 1.01110 0.90814 1.14814 0.92102 0.92415 0.88083 0.83562 0.85814 0.85948 0.84024 0.91764 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.09 10.49 -19.38 -0.20 -4.30 16 3 C 0.18 2.75 6.69 -39.16 -0.26 2.49 16 4 C -0.20 -3.27 9.95 -39.41 -0.39 -3.66 16 5 C 0.19 3.49 7.27 -39.10 -0.28 3.20 16 6 F -0.12 -2.32 16.82 2.25 0.04 -2.28 16 7 C -0.11 -2.19 4.84 -104.76 -0.51 -2.70 16 8 C -0.15 -3.14 4.60 -104.73 -0.48 -3.62 16 9 C -0.02 -0.41 9.77 -39.27 -0.38 -0.80 16 10 C -0.25 -4.45 10.01 -39.51 -0.40 -4.84 16 11 C 0.15 3.00 7.29 -39.39 -0.29 2.71 16 12 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 13 C -0.27 -6.04 9.14 -39.38 -0.36 -6.40 16 14 C 0.19 4.69 6.65 -38.75 -0.26 4.43 16 15 O -0.15 -4.28 9.21 0.31 0.00 -4.28 16 16 C -0.40 -10.88 9.48 30.88 0.29 -10.59 16 17 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 18 C 0.05 1.21 5.49 -17.52 -0.10 1.11 16 19 N -0.85 -24.19 13.67 55.48 0.76 -23.44 16 20 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C 0.19 3.53 7.27 -39.10 -0.28 3.24 16 25 F -0.12 -2.38 16.82 2.25 0.04 -2.34 16 26 C -0.26 -4.03 9.00 -39.41 -0.35 -4.39 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 31 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.14 3.17 5.64 -52.48 -0.30 2.87 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.14 1.81 6.27 -52.49 -0.33 1.48 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -30.58 325.46 -5.03 -35.60 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.52 Total: 2.39 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.06 Total: -18.60 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.76 Total: -23.44 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.20 Total: -8.57 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.43 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.58 -5.03 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241693283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.348 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds