Wall clock time and date at job start Tue Mar 31 2020 13:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35884 * 116.99788 * 2 1 4 4 C 1.38801 * 119.90473 * 179.97438 * 3 2 1 5 5 C 1.38139 * 120.10111 * 179.97438 * 4 3 2 6 6 F 1.35094 * 120.04929 * 179.97438 * 5 4 3 7 7 C 1.39621 * 119.89617 * 359.97438 * 5 4 3 8 8 C 1.48228 * 120.08973 * 179.97438 * 7 5 4 9 9 C 1.39317 * 120.13601 * 90.02606 * 8 7 5 10 10 C 1.37994 * 119.96423 * 179.97438 * 9 8 7 11 11 C 1.38666 * 120.24157 * 359.97438 * 10 9 8 12 12 F 1.35104 * 119.85348 * 179.97438 * 11 10 9 13 13 C 1.38339 * 120.28088 * 359.73152 * 11 10 9 14 14 C 1.38688 * 120.02928 * 0.54827 * 13 11 10 15 15 O 1.35685 * 120.12133 * 179.72665 * 14 13 11 16 16 C 1.34809 * 117.00099 * 5.59729 * 15 14 13 17 17 H 1.07999 * 119.99835 * 354.93854 * 16 15 14 18 18 C 1.38625 * 119.99933 * 174.93606 * 16 15 14 19 19 N 1.31573 * 120.00133 * 359.72737 * 18 16 15 20 20 Si 1.86808 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47042 * 89.99858 * 20 18 16 22 22 H 1.48497 * 109.47015 * 210.00168 * 20 18 16 23 23 H 1.48505 * 109.46906 * 329.99985 * 20 18 16 24 24 C 1.39624 * 119.80995 * 0.25364 * 7 5 4 25 25 F 1.35099 * 120.04550 * 179.74986 * 24 7 5 26 26 C 1.38133 * 119.90110 * 359.49222 * 24 7 5 27 27 H 1.08996 * 109.47693 * 299.99655 * 1 2 3 28 28 H 1.09006 * 109.47107 * 59.99892 * 1 2 3 29 29 H 1.09007 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.94692 * 359.97438 * 4 3 2 31 31 H 1.07996 * 120.02243 * 359.94880 * 9 8 7 32 32 H 1.07997 * 119.87425 * 179.97438 * 10 9 8 33 33 H 1.08005 * 119.98537 * 180.27878 * 13 11 10 34 34 H 0.97001 * 119.99570 * 180.02562 * 19 18 16 35 35 H 1.08000 * 119.95065 * 180.27888 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 3.4321 1.2811 0.0005 5 6 4.0634 2.5098 0.0000 6 9 5.4126 2.5771 0.0011 7 6 3.3048 3.6820 -0.0016 8 6 3.9778 5.0027 -0.0016 9 6 4.2963 5.6254 -1.2065 10 6 4.9223 6.8552 -1.2023 11 6 5.2358 7.4752 -0.0023 12 9 5.8492 8.6790 -0.0074 13 6 4.9187 6.8688 1.1999 14 6 4.2947 5.6302 1.2092 15 8 3.9879 5.0311 2.3873 16 6 4.2097 5.7417 3.5113 17 1 4.6897 6.7074 3.4537 18 6 3.8218 5.2327 4.7410 19 7 3.2321 4.0585 4.8106 20 14 4.1286 6.2176 6.2984 21 1 2.9590 7.0913 6.5700 22 1 4.3286 5.2891 7.4399 23 1 5.3422 7.0553 6.1232 24 6 1.9106 3.6065 0.0027 25 9 1.1719 4.7377 0.0062 26 6 1.2877 2.3736 -0.0021 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0180 0.3738 0.0014 31 1 4.0538 5.1459 -2.1432 32 1 5.1689 7.3364 -2.1372 33 1 5.1610 7.3581 2.1318 34 1 2.9604 3.7026 5.6710 35 1 0.2094 2.3143 -0.0034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241693283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:51 Heat of formation + Delta-G solvation = -162.057189 kcal Electronic energy + Delta-G solvation = -27184.928989 eV Core-core repulsion = 22699.281740 eV Total energy + Delta-G solvation = -4485.647249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.05238 -50.02869 -49.91890 -41.21426 -40.74432 -38.48575 -37.71837 -34.37711 -33.07792 -31.61269 -31.07571 -29.51454 -28.03753 -27.39962 -24.44667 -23.80850 -23.60367 -22.42017 -20.15997 -19.86151 -19.30683 -18.62096 -17.77126 -17.44204 -17.31366 -17.06778 -16.91595 -16.86815 -16.62468 -16.38613 -16.33158 -15.99735 -15.88597 -15.50066 -15.44106 -15.19200 -14.94809 -14.20067 -13.99989 -13.67397 -13.51464 -13.34316 -13.15427 -12.91232 -12.65249 -12.46238 -12.38056 -12.29196 -12.16632 -11.73668 -11.55054 -10.86742 -9.89549 -9.79862 -9.34087 -9.18270 -8.53577 -6.22731 -0.10589 -0.02417 0.12229 0.47553 1.32471 1.40790 1.48944 2.00041 2.11627 2.27535 2.54257 2.95130 2.99263 3.16649 3.31741 3.39212 3.55666 3.78824 3.87412 3.93213 4.11274 4.14914 4.35990 4.38275 4.42033 4.60799 4.75849 4.83055 4.84813 4.88211 4.95697 4.99801 5.12180 5.19861 5.28562 5.44239 5.54040 5.90897 5.96596 6.19157 6.89364 7.61824 8.67180 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009617 B = 0.005784 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.900184 B = 4839.964828 C = 6698.037127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.312 6.312 3 C 0.189 3.811 4 C -0.199 4.199 5 C 0.167 3.833 6 F -0.131 7.131 7 C -0.138 4.138 8 C -0.150 4.150 9 C -0.019 4.019 10 C -0.219 4.219 11 C 0.143 3.857 12 F -0.143 7.143 13 C -0.285 4.285 14 C 0.162 3.838 15 O -0.200 6.200 16 C -0.422 4.422 17 H 0.099 0.901 18 C -0.010 4.010 19 N -0.904 5.904 20 Si 1.014 2.986 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.256 1.256 24 C 0.167 3.833 25 F -0.133 7.133 26 C -0.247 4.247 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.275 0.725 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.620 -5.096 -11.506 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.142 3.858 4 C -0.218 4.218 5 C 0.147 3.853 6 F -0.109 7.109 7 C -0.140 4.140 8 C -0.151 4.151 9 C -0.037 4.037 10 C -0.238 4.238 11 C 0.124 3.876 12 F -0.121 7.121 13 C -0.305 4.305 14 C 0.109 3.891 15 O -0.104 6.104 16 C -0.498 4.498 17 H 0.116 0.884 18 C -0.210 4.210 19 N -0.540 5.540 20 Si 0.833 3.167 21 H -0.188 1.188 22 H -0.192 1.192 23 H -0.180 1.180 24 C 0.148 3.852 25 F -0.111 7.111 26 C -0.266 4.266 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.185 0.815 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.148 0.852 34 H 0.084 0.916 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.689 -5.580 -11.281 13.431 hybrid contribution 0.281 1.179 1.187 1.697 sum -4.407 -4.401 -10.095 11.862 Atomic orbital electron populations 1.23542 0.75542 1.06449 1.02762 1.86087 1.24160 1.24627 1.87644 1.18158 0.90792 0.84508 0.92341 1.20301 0.93149 0.97291 1.11047 1.17079 0.76801 0.92671 0.98728 1.91487 1.28861 1.97164 1.93379 1.18435 0.91993 0.92800 1.10758 1.17837 1.09939 0.96083 0.91278 1.21006 0.93275 0.93147 0.96278 1.20950 1.08147 0.97867 0.96842 1.17604 0.94680 0.81035 0.94282 1.91441 1.80496 1.42682 1.97513 1.21024 1.11893 0.98994 0.98595 1.19488 0.91750 0.90575 0.87253 1.83971 1.73899 1.40943 1.11564 1.21801 1.41723 1.03462 0.82817 0.88403 1.26484 0.95213 0.97554 1.01717 1.70174 1.38138 1.18382 1.27305 0.84660 0.79535 0.77488 0.75037 1.18755 1.19180 1.17991 1.17214 0.87326 0.82403 0.98297 1.91484 1.76279 1.50043 1.93339 1.21259 1.02698 0.89657 1.12976 0.92091 0.90550 0.85091 0.81468 0.81834 0.81625 0.85167 0.91588 0.80903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.31 -7.45 10.49 -92.25 -0.97 -8.42 16 3 C 0.19 5.49 6.69 22.54 0.15 5.64 16 4 C -0.20 -6.30 9.95 22.38 0.22 -6.07 16 5 C 0.17 6.33 7.27 22.58 0.16 6.49 16 6 F -0.13 -5.18 16.82 44.97 0.76 -4.42 16 7 C -0.14 -5.58 4.84 -19.95 -0.10 -5.68 16 8 C -0.15 -6.41 4.60 -19.93 -0.09 -6.50 16 9 C -0.02 -0.65 9.77 22.47 0.22 -0.43 16 10 C -0.22 -7.14 10.01 22.31 0.22 -6.91 16 11 C 0.14 5.55 7.29 22.40 0.16 5.72 16 12 F -0.14 -5.19 17.26 44.97 0.78 -4.41 16 13 C -0.28 -13.12 9.14 22.40 0.20 -12.91 16 14 C 0.16 8.16 6.65 22.81 0.15 8.32 16 15 O -0.20 -11.78 9.21 -21.81 -0.20 -11.98 16 16 C -0.42 -24.44 9.48 67.91 0.64 -23.80 16 17 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 18 C -0.01 -0.55 5.49 84.82 0.47 -0.09 16 19 N -0.90 -53.89 13.67 21.61 0.30 -53.59 16 20 Si 1.01 42.60 29.55 68.60 2.03 44.63 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 C 0.17 6.27 7.27 22.58 0.16 6.44 16 25 F -0.13 -5.26 16.82 44.97 0.76 -4.50 16 26 C -0.25 -7.40 9.00 22.38 0.20 -7.20 16 27 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 28 H 0.08 0.88 7.65 -2.38 -0.02 0.87 16 29 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.16 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.13 6.15 5.64 -2.91 -0.02 6.13 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.17 3.97 6.27 -2.91 -0.02 3.96 16 Total: -1.00 -71.01 325.46 8.52 -62.49 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.17 Total: 15.93 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 3.90 Total: -35.72 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.30 Total: -53.59 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.17 Total: -20.40 kcal Atomic # 9 Polarization: -15.63 SS G_CDS: 2.29 Total: -13.34 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.01 8.52 -62.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241693283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.568 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds