Wall clock time and date at job start Tue Mar 31 2020 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38336 * 119.93776 * 269.72091 * 10 9 7 12 12 C 1.38305 * 120.24320 * 179.72925 * 11 10 9 13 13 C 1.38044 * 120.11544 * 0.54562 * 12 11 10 14 14 C 1.39311 * 119.88090 * 359.73388 * 13 12 11 15 15 C 1.48398 * 120.11954 * 179.97438 * 14 13 12 16 16 C 1.39362 * 120.11019 * 0.02562 * 15 14 13 17 17 C 1.38004 * 119.92851 * 180.02562 * 16 15 14 18 18 C 1.38298 * 120.14932 * 359.97138 * 17 16 15 19 19 C 1.50699 * 119.89419 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.46862 * 359.97438 * 19 18 17 21 21 F 1.39897 * 109.47483 * 119.99726 * 19 18 17 22 22 F 1.39895 * 109.47323 * 240.00448 * 19 18 17 23 23 C 1.38522 * 120.21832 * 0.02562 * 18 17 16 24 24 F 1.35105 * 119.96442 * 180.02562 * 23 18 17 25 25 C 1.38263 * 120.06955 * 359.75982 * 23 18 17 26 26 C 1.37998 * 119.93864 * 89.99698 * 10 9 7 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07997 * 119.88066 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.94385 * 180.25408 * 12 11 10 32 32 H 1.08009 * 120.05459 * 179.74631 * 13 12 11 33 33 H 1.07998 * 120.03181 * 359.97438 * 16 15 14 34 34 H 1.07997 * 119.92071 * 179.97438 * 17 16 15 35 35 H 1.08002 * 120.07657 * 180.25340 * 25 23 18 36 36 H 1.08000 * 120.05927 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6692 -4.1699 -1.2155 12 6 3.5722 -5.2173 -1.2297 13 6 4.0319 -5.7517 -0.0428 14 6 3.5889 -5.2304 1.1707 15 6 4.0791 -5.8012 2.4498 16 6 4.9848 -6.8603 2.4411 17 6 5.4379 -7.3886 3.6328 18 6 4.9956 -6.8690 4.8357 19 6 5.4946 -7.4499 6.1336 20 9 6.3861 -8.4940 5.8650 21 9 6.1484 -6.4554 6.8689 22 9 4.4121 -7.9401 6.8718 23 6 4.0955 -5.8162 4.8515 24 9 3.6672 -5.3122 6.0296 25 6 3.6391 -5.2771 3.6629 26 6 2.6834 -4.1712 1.1791 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 2.3084 -3.7579 -2.1463 31 1 3.9147 -5.6210 -2.1710 32 1 4.7340 -6.5724 -0.0551 33 1 5.3311 -7.2678 1.5028 34 1 6.1394 -8.2097 3.6259 35 1 2.9404 -4.4536 3.6751 36 1 2.3363 -3.7635 2.1170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241914945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:23 Heat of formation + Delta-G solvation = -161.978646 kcal Electronic energy + Delta-G solvation = -25904.071434 eV Core-core repulsion = 21430.800381 eV Total energy + Delta-G solvation = -4473.271054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.44187 -49.26313 -47.89971 -47.83295 -39.99610 -38.37921 -34.18920 -33.11843 -31.60264 -30.77886 -29.86168 -26.91669 -26.01355 -23.81243 -23.26897 -22.70247 -21.39330 -20.30741 -18.92902 -18.73132 -18.66079 -17.36586 -16.80925 -16.53009 -16.39883 -15.96041 -15.03865 -14.79784 -14.74627 -14.69993 -14.56968 -14.28784 -14.08559 -14.00835 -13.90044 -13.72516 -13.40653 -13.37544 -13.11707 -13.00683 -12.55466 -12.10383 -11.83957 -11.65358 -11.53521 -11.16777 -10.86146 -10.56058 -10.22611 -10.00224 -9.97076 -9.21246 -9.07320 -8.46596 -8.27127 -7.95191 -6.47670 -4.20203 0.19503 0.81024 1.76104 1.82393 2.36303 3.15384 3.38599 3.39597 3.41200 3.57224 3.61545 3.81985 4.13836 4.22614 4.34831 4.42578 4.48164 4.73381 4.90182 5.11112 5.15283 5.28351 5.33895 5.46612 5.51396 5.66832 5.73867 5.77585 5.80609 6.11286 6.22741 6.39545 6.40463 6.72830 6.79517 6.85385 7.03892 7.34740 7.44864 7.99499 8.32855 8.73438 9.51106 10.91436 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.002975 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.733519 B = 9410.337081 C =10499.016800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.596 4.596 8 H 0.052 0.948 9 C 0.034 3.966 10 C -0.029 4.029 11 C -0.105 4.105 12 C -0.123 4.123 13 C -0.122 4.122 14 C -0.078 4.078 15 C 0.042 3.958 16 C -0.133 4.133 17 C -0.041 4.041 18 C -0.239 4.239 19 C 0.515 3.485 20 F -0.176 7.176 21 F -0.174 7.174 22 F -0.174 7.174 23 C 0.158 3.842 24 F -0.124 7.124 25 C -0.155 4.155 26 C -0.098 4.098 27 H 0.269 0.731 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.038 -17.208 6.488 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.900 3.100 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.634 4.634 8 H 0.070 0.930 9 C -0.003 4.003 10 C -0.029 4.029 11 C -0.123 4.123 12 C -0.141 4.141 13 C -0.140 4.140 14 C -0.078 4.078 15 C 0.042 3.958 16 C -0.151 4.151 17 C -0.059 4.059 18 C -0.241 4.241 19 C 0.461 3.539 20 F -0.157 7.157 21 F -0.155 7.155 22 F -0.156 7.156 23 C 0.139 3.861 24 F -0.102 7.102 25 C -0.173 4.173 26 C -0.116 4.116 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.836 -15.557 6.578 20.068 hybrid contribution 0.240 -1.616 0.472 1.700 sum 11.076 -17.173 7.050 21.617 Atomic orbital electron populations 1.70768 1.06875 1.30686 1.46136 1.25886 0.96474 1.02694 0.93531 0.83495 0.74691 0.74907 0.76940 1.21301 1.21374 1.20860 1.21900 0.94374 0.90715 1.56393 0.93002 1.18510 0.93177 0.91284 0.97335 1.20431 0.96126 0.94598 0.91762 1.21271 0.97001 0.95622 0.98440 1.21012 0.98221 0.97360 0.97489 1.20959 1.00894 1.00520 0.91652 1.18553 1.00033 0.98231 0.90940 1.18930 0.92254 0.92350 0.92254 1.21288 0.98356 0.97025 0.98387 1.20796 0.97075 0.98105 0.89904 1.20012 1.06961 1.03247 0.93910 1.18026 0.75449 0.75927 0.84521 1.93160 1.69383 1.59364 1.93806 1.93237 1.81772 1.61279 1.79206 1.93232 1.54984 1.88253 1.79085 1.17137 0.94387 0.92657 0.81955 1.91582 1.87985 1.85959 1.44702 1.21348 1.03394 1.02784 0.89804 1.21175 0.96667 0.94942 0.98811 0.91999 0.96121 0.96018 0.86031 0.86266 0.86299 0.83798 0.83464 0.82839 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.79 13.65 55.43 0.76 -26.03 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 24.64 29.90 -169.99 -5.08 19.56 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.60 -16.19 9.09 -34.44 -0.31 -16.51 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.81 4.41 -29.03 -0.13 0.69 16 10 C -0.03 -0.58 5.06 -104.67 -0.53 -1.11 16 11 C -0.11 -1.85 9.69 -39.52 -0.38 -2.23 16 12 C -0.12 -1.75 10.03 -39.63 -0.40 -2.15 16 13 C -0.12 -1.63 9.43 -39.25 -0.37 -2.00 16 14 C -0.08 -1.15 5.88 -104.90 -0.62 -1.77 16 15 C 0.04 0.54 5.88 -104.91 -0.62 -0.08 16 16 C -0.13 -1.34 9.43 -39.25 -0.37 -1.71 16 17 C -0.04 -0.39 9.41 -39.64 -0.37 -0.76 16 18 C -0.24 -2.74 5.38 -104.50 -0.56 -3.31 16 19 C 0.51 5.86 3.02 36.01 0.11 5.97 16 20 F -0.18 -1.79 15.96 2.25 0.04 -1.76 16 21 F -0.17 -2.14 17.04 2.25 0.04 -2.10 16 22 F -0.17 -2.11 17.04 2.25 0.04 -2.07 16 23 C 0.16 2.04 7.12 -39.47 -0.28 1.75 16 24 F -0.12 -1.70 16.44 2.25 0.04 -1.67 16 25 C -0.15 -2.02 9.41 -39.18 -0.37 -2.39 16 26 C -0.10 -1.74 9.08 -39.25 -0.36 -2.10 16 27 H 0.27 7.85 7.22 -40.82 -0.29 7.56 16 28 H 0.02 0.52 7.96 -51.93 -0.41 0.10 16 29 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 30 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.17 6.21 -52.48 -0.33 0.85 16 33 H 0.14 1.10 6.21 -52.49 -0.33 0.77 16 34 H 0.15 1.02 7.14 -52.49 -0.37 0.65 16 35 H 0.15 2.00 6.21 -52.49 -0.33 1.67 16 36 H 0.12 2.13 6.21 -52.49 -0.33 1.80 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -29.52 328.09 -7.73 -37.25 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -2.85 Total: -0.84 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -5.65 Total: -27.29 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.76 Total: -26.03 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.15 Total: -7.60 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.52 -7.73 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.730 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds