Wall clock time and date at job start Tue Mar 31 2020 14:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38336 * 119.93776 * 269.72091 * 10 9 7 12 12 C 1.38305 * 120.24320 * 179.72925 * 11 10 9 13 13 C 1.38044 * 120.11544 * 0.54562 * 12 11 10 14 14 C 1.39311 * 119.88090 * 359.73388 * 13 12 11 15 15 C 1.48398 * 120.11954 * 179.97438 * 14 13 12 16 16 C 1.39362 * 120.11019 * 0.02562 * 15 14 13 17 17 C 1.38004 * 119.92851 * 180.02562 * 16 15 14 18 18 C 1.38298 * 120.14932 * 359.97138 * 17 16 15 19 19 C 1.50699 * 119.89419 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.46862 * 359.97438 * 19 18 17 21 21 F 1.39897 * 109.47483 * 119.99726 * 19 18 17 22 22 F 1.39895 * 109.47323 * 240.00448 * 19 18 17 23 23 C 1.38522 * 120.21832 * 0.02562 * 18 17 16 24 24 F 1.35105 * 119.96442 * 180.02562 * 23 18 17 25 25 C 1.38263 * 120.06955 * 359.75982 * 23 18 17 26 26 C 1.37998 * 119.93864 * 89.99698 * 10 9 7 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07997 * 119.88066 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.94385 * 180.25408 * 12 11 10 32 32 H 1.08009 * 120.05459 * 179.74631 * 13 12 11 33 33 H 1.07998 * 120.03181 * 359.97438 * 16 15 14 34 34 H 1.07997 * 119.92071 * 179.97438 * 17 16 15 35 35 H 1.08002 * 120.07657 * 180.25340 * 25 23 18 36 36 H 1.08000 * 120.05927 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6692 -4.1699 -1.2155 12 6 3.5722 -5.2173 -1.2297 13 6 4.0319 -5.7517 -0.0428 14 6 3.5889 -5.2304 1.1707 15 6 4.0791 -5.8012 2.4498 16 6 4.9848 -6.8603 2.4411 17 6 5.4379 -7.3886 3.6328 18 6 4.9956 -6.8690 4.8357 19 6 5.4946 -7.4499 6.1336 20 9 6.3861 -8.4940 5.8650 21 9 6.1484 -6.4554 6.8689 22 9 4.4121 -7.9401 6.8718 23 6 4.0955 -5.8162 4.8515 24 9 3.6672 -5.3122 6.0296 25 6 3.6391 -5.2771 3.6629 26 6 2.6834 -4.1712 1.1791 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 2.3084 -3.7579 -2.1463 31 1 3.9147 -5.6210 -2.1710 32 1 4.7340 -6.5724 -0.0551 33 1 5.3311 -7.2678 1.5028 34 1 6.1394 -8.2097 3.6259 35 1 2.9404 -4.4536 3.6751 36 1 2.3363 -3.7635 2.1170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241914945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:22 Heat of formation + Delta-G solvation = -174.941050 kcal Electronic energy + Delta-G solvation = -25904.633526 eV Core-core repulsion = 21430.800381 eV Total energy + Delta-G solvation = -4473.833146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.34445 -50.26854 -48.77017 -48.76680 -41.04510 -39.52209 -35.97683 -34.36561 -33.00110 -31.84322 -30.97930 -28.64039 -27.00639 -25.42924 -24.48639 -23.86261 -22.52686 -21.58854 -19.84770 -19.63992 -19.55246 -19.05657 -18.16378 -17.64842 -17.46455 -16.97547 -16.11696 -16.00927 -15.73467 -15.71084 -15.62411 -15.61779 -15.36817 -15.18398 -14.94195 -14.91399 -14.61985 -14.41434 -14.25648 -14.14614 -13.87331 -13.44787 -13.25862 -13.11291 -12.69506 -12.55797 -12.53152 -12.00162 -11.96419 -11.59220 -11.16982 -10.83778 -10.61580 -10.11013 -9.62944 -9.22557 -8.70083 -6.45312 -0.78710 -0.08187 0.53448 0.63687 1.46562 1.50168 1.58387 1.76666 2.18978 2.50109 2.52409 2.70106 2.91753 2.99489 3.10172 3.24555 3.37002 3.51794 3.90519 3.96716 4.02200 4.06958 4.24139 4.37587 4.52972 4.56335 4.58529 4.73640 4.82480 4.95318 4.97650 5.07318 5.14410 5.20194 5.47781 5.54531 5.59666 5.86550 5.90012 6.07641 6.11542 6.50902 7.34945 8.66721 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.002975 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.733519 B = 9410.337081 C =10499.016800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.034 4.034 3 Si 1.118 2.882 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.604 4.604 8 H 0.046 0.954 9 C 0.039 3.961 10 C -0.065 4.065 11 C -0.125 4.125 12 C -0.110 4.110 13 C -0.106 4.106 14 C -0.070 4.070 15 C 0.025 3.975 16 C -0.112 4.112 17 C -0.028 4.028 18 C -0.237 4.237 19 C 0.517 3.483 20 F -0.164 7.164 21 F -0.181 7.181 22 F -0.181 7.181 23 C 0.139 3.861 24 F -0.137 7.137 25 C -0.167 4.167 26 C -0.120 4.120 27 H 0.257 0.743 28 H -0.004 1.004 29 H 0.002 0.998 30 H 0.114 0.886 31 H 0.160 0.840 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.184 0.816 35 H 0.138 0.862 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.538 -19.853 5.732 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.232 4.232 3 Si 0.939 3.061 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.205 1.205 7 C -0.641 4.641 8 H 0.065 0.935 9 C 0.002 3.998 10 C -0.065 4.065 11 C -0.143 4.143 12 C -0.128 4.128 13 C -0.123 4.123 14 C -0.070 4.070 15 C 0.025 3.975 16 C -0.129 4.129 17 C -0.046 4.046 18 C -0.240 4.240 19 C 0.462 3.538 20 F -0.146 7.146 21 F -0.162 7.162 22 F -0.162 7.162 23 C 0.119 3.881 24 F -0.115 7.115 25 C -0.186 4.186 26 C -0.138 4.138 27 H 0.066 0.934 28 H 0.014 0.986 29 H 0.020 0.980 30 H 0.132 0.868 31 H 0.178 0.822 32 H 0.189 0.811 33 H 0.201 0.799 34 H 0.201 0.799 35 H 0.156 0.844 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.339 -18.228 5.826 23.912 hybrid contribution -0.791 -0.957 0.769 1.460 sum 13.548 -19.185 6.594 24.394 Atomic orbital electron populations 1.70891 1.07877 1.29959 1.48486 1.27404 0.96563 1.06617 0.92633 0.82918 0.74239 0.71091 0.77829 1.19922 1.19394 1.20520 1.22236 0.94285 0.92273 1.55332 0.93539 1.18287 0.93684 0.92761 0.95056 1.20106 0.97415 0.94974 0.94035 1.21323 0.98604 0.97348 0.96991 1.21411 0.96157 0.95396 0.99828 1.21524 1.00105 1.00600 0.90082 1.18727 0.98546 0.96776 0.92953 1.18909 0.93893 0.93912 0.90765 1.21657 0.96107 0.94957 1.00168 1.21224 0.96574 0.98178 0.88616 1.20199 1.06281 1.02563 0.94911 1.18011 0.75401 0.76004 0.84336 1.93181 1.68931 1.58765 1.93680 1.93225 1.81889 1.61707 1.79428 1.93223 1.55395 1.88311 1.79283 1.17277 0.95617 0.93767 0.81438 1.91544 1.88341 1.86337 1.45305 1.21318 1.03668 1.02878 0.90690 1.21122 0.98440 0.96786 0.97423 0.93385 0.98556 0.98017 0.86750 0.82216 0.81129 0.79944 0.79851 0.84435 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.65 21.45 0.29 -57.41 16 2 C -0.03 -1.99 5.46 84.65 0.46 -1.53 16 3 Si 1.12 50.32 29.90 68.60 2.05 52.37 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.60 -34.43 9.09 25.60 0.23 -34.20 16 8 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 9 C 0.04 2.04 4.41 29.10 0.13 2.17 16 10 C -0.07 -2.75 5.06 -19.90 -0.10 -2.85 16 11 C -0.12 -4.38 9.69 22.31 0.22 -4.16 16 12 C -0.11 -2.75 10.03 22.24 0.22 -2.53 16 13 C -0.11 -2.32 9.43 22.48 0.21 -2.11 16 14 C -0.07 -1.94 5.88 -20.04 -0.12 -2.06 16 15 C 0.03 0.59 5.88 -20.05 -0.12 0.47 16 16 C -0.11 -1.66 9.43 22.48 0.21 -1.45 16 17 C -0.03 -0.40 9.41 22.23 0.21 -0.19 16 18 C -0.24 -4.86 5.38 -19.78 -0.11 -4.97 16 19 C 0.52 10.66 3.02 71.24 0.22 10.87 16 20 F -0.16 -2.79 15.96 44.97 0.72 -2.07 16 21 F -0.18 -4.21 17.04 44.97 0.77 -3.45 16 22 F -0.18 -4.15 17.04 44.97 0.77 -3.38 16 23 C 0.14 3.50 7.12 22.34 0.16 3.66 16 24 F -0.14 -3.87 16.44 44.97 0.74 -3.13 16 25 C -0.17 -4.38 9.41 22.53 0.21 -4.17 16 26 C -0.12 -4.43 9.08 22.48 0.20 -4.22 16 27 H 0.26 16.00 7.22 -92.71 -0.67 15.33 16 28 H 0.00 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.00 0.09 7.94 -2.39 -0.02 0.07 16 30 H 0.11 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.17 1.99 6.21 -2.91 -0.02 1.98 16 33 H 0.18 1.31 6.21 -2.91 -0.02 1.29 16 34 H 0.18 1.35 7.14 -2.91 -0.02 1.33 16 35 H 0.14 3.94 6.21 -2.91 -0.02 3.92 16 36 H 0.11 4.14 6.21 -2.91 -0.02 4.12 16 Total: -1.00 -69.16 328.09 8.83 -60.33 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 1.25 Total: 3.99 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 2.24 Total: -47.27 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.29 Total: -57.41 kcal Atomic # 9 Polarization: -15.01 SS G_CDS: 2.99 Total: -12.02 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Total: -69.16 8.83 -60.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.607 kcal (2) G-P(sol) polarization free energy of solvation -69.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds