Wall clock time and date at job start Tue Mar 31 2020 14:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35997 * 116.99785 * 2 1 4 4 C 1.38405 * 119.97631 * 0.02562 * 3 2 1 5 5 C 1.39357 * 119.86760 * 180.02562 * 4 3 2 6 6 C 1.48262 * 120.09438 * 180.02562 * 5 4 3 7 7 C 1.39313 * 120.13604 * 64.99718 * 6 5 4 8 8 C 1.37979 * 119.96734 * 180.02562 * 7 6 5 9 9 C 1.38677 * 120.24205 * 0.25676 * 8 7 6 10 10 F 1.35102 * 119.85718 * 179.72556 * 9 8 7 11 11 C 1.38336 * 120.27449 * 359.48537 * 9 8 7 12 12 C 1.38703 * 120.03069 * 0.51349 * 11 9 8 13 13 O 1.35667 * 120.12230 * 179.72723 * 12 11 9 14 14 C 1.34817 * 116.99960 * 354.39346 * 13 12 11 15 15 H 1.07995 * 119.99867 * 5.06884 * 14 13 12 16 16 C 1.38634 * 119.99711 * 185.06495 * 14 13 12 17 17 N 1.31560 * 120.00540 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46934 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46998 * 120.00041 * 18 16 14 21 21 H 1.48497 * 109.46929 * 240.00172 * 18 16 14 22 22 C 1.39608 * 119.81707 * 0.27041 * 5 4 3 23 23 F 1.35098 * 120.02645 * 179.70787 * 22 5 4 24 24 C 1.38213 * 119.94501 * 359.42800 * 22 5 4 25 25 C 1.38427 * 120.13410 * 0.57604 * 24 22 5 26 26 F 1.35097 * 119.90796 * 179.69756 * 25 24 22 27 27 H 1.08999 * 109.47009 * 59.99888 * 1 2 3 28 28 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46697 * 299.99641 * 1 2 3 30 30 H 1.08005 * 120.06574 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.01535 * 0.02562 * 7 6 5 32 32 H 1.07992 * 119.87256 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.98296 * 180.28664 * 11 9 8 34 34 H 0.96995 * 120.00595 * 180.02562 * 17 16 14 35 35 H 1.07997 * 119.93041 * 180.29587 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3722 0.0005 5 6 1.9271 3.6127 0.0000 6 6 1.1239 4.8589 0.0011 7 6 0.3183 5.1708 1.0941 8 6 -0.4281 6.3313 1.0912 9 6 -0.3839 7.1875 0.0012 10 9 -1.1222 8.3189 0.0043 11 6 0.4167 6.8903 -1.0871 12 6 1.1717 5.7268 -1.0963 13 8 1.9532 5.4307 -2.1650 14 6 1.8636 6.2476 -3.2338 15 1 1.2541 7.1377 -3.1835 16 6 2.5539 5.9448 -4.3973 17 7 3.2961 4.8603 -4.4587 18 14 2.4303 7.0770 -5.8781 19 1 1.5396 8.2202 -5.5541 20 1 3.7813 7.5859 -6.2262 21 1 1.8723 6.3253 -7.0307 22 6 3.3216 3.6787 -0.0068 23 9 3.9415 4.8790 -0.0133 24 6 4.0674 2.5151 -0.0010 25 6 3.4345 1.2840 -0.0005 26 9 4.1680 0.1495 -0.0010 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2135 2.3164 0.0005 31 1 0.2780 4.5046 1.9431 32 1 -1.0524 6.5714 1.9390 33 1 0.4510 7.5627 -1.9316 34 1 3.7793 4.6487 -5.2726 35 1 5.1461 2.5665 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242045067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:06 Heat of formation + Delta-G solvation = -145.246026 kcal Electronic energy + Delta-G solvation = -27110.889044 eV Core-core repulsion = 22625.970782 eV Total energy + Delta-G solvation = -4484.918262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.61658 -48.40870 -48.28608 -39.90717 -39.11040 -37.11307 -36.28331 -32.50771 -31.89646 -29.77592 -29.51038 -28.34942 -26.87675 -25.57270 -23.23834 -22.38825 -21.90217 -20.98163 -18.40865 -18.26020 -17.61605 -17.29100 -17.16511 -16.11148 -15.77688 -15.47621 -15.32627 -15.11211 -15.06258 -15.01048 -14.66947 -14.32862 -14.17977 -14.10202 -13.82070 -13.56866 -13.40404 -13.13611 -12.56229 -12.06481 -11.98469 -11.90022 -11.82792 -11.63652 -11.31479 -10.95612 -10.91059 -10.81233 -10.59419 -10.51135 -9.73019 -9.02359 -8.81022 -8.24808 -7.82100 -7.42382 -6.63025 -4.22344 1.11092 1.35739 1.78414 2.03280 3.03766 3.05489 3.11375 3.19428 3.61043 3.81688 4.15171 4.24267 4.71131 4.72542 4.77832 4.88525 4.92493 5.04713 5.10838 5.16943 5.35339 5.44071 5.46874 5.62354 5.63303 5.91154 5.96643 6.05679 6.18063 6.30367 6.41241 6.59362 6.72702 6.76323 6.89868 6.91310 7.14976 7.36607 7.49779 7.78779 8.80605 9.42679 10.52609 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.005527 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.620181 B = 5065.218729 C = 6764.851885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.081 3.919 4 C -0.144 4.144 5 C -0.008 4.008 6 C -0.156 4.156 7 C -0.025 4.025 8 C -0.252 4.252 9 C 0.151 3.849 10 F -0.150 7.150 11 C -0.270 4.270 12 C 0.193 3.807 13 O -0.149 6.149 14 C -0.397 4.397 15 H 0.096 0.904 16 C 0.046 3.954 17 N -0.846 5.846 18 Si 0.942 3.058 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.274 1.274 22 C 0.125 3.875 23 F -0.120 7.120 24 C -0.153 4.153 25 C 0.090 3.910 26 F -0.131 7.131 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.145 0.855 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.273 0.727 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -5.115 8.687 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.035 3.965 4 C -0.163 4.163 5 C -0.009 4.009 6 C -0.158 4.158 7 C -0.043 4.043 8 C -0.272 4.272 9 C 0.132 3.868 10 F -0.128 7.128 11 C -0.291 4.291 12 C 0.136 3.864 13 O -0.049 6.049 14 C -0.473 4.473 15 H 0.113 0.887 16 C -0.161 4.161 17 N -0.479 5.479 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.199 1.199 22 C 0.105 3.895 23 F -0.098 7.098 24 C -0.173 4.173 25 C 0.070 3.930 26 F -0.110 7.110 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.083 0.917 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.100 -5.573 8.429 10.905 hybrid contribution -0.178 1.040 -0.904 1.390 sum -4.278 -4.533 7.525 9.771 Atomic orbital electron populations 1.23105 0.78135 1.03928 1.01787 1.86105 1.21559 1.25589 1.89218 1.18731 0.90515 0.85467 1.01802 1.21006 1.00320 0.89638 1.05322 1.18350 0.90699 0.92995 0.98883 1.17552 1.06272 0.95783 0.96182 1.20476 0.92958 0.95219 0.95635 1.20428 1.08970 0.98154 0.99610 1.17541 0.91516 0.82592 0.95161 1.91427 1.75135 1.49379 1.96886 1.20985 1.05284 1.01739 1.01042 1.18911 0.88435 0.90724 0.88378 1.83987 1.51344 1.49368 1.20225 1.21460 1.31508 1.05267 0.89049 0.88656 1.25334 0.95389 0.97129 0.98238 1.70045 1.26188 1.23281 1.28349 0.85627 0.78755 0.79232 0.79776 1.18879 1.19877 1.19922 1.17197 0.89585 0.80564 1.02145 1.91539 1.82404 1.42513 1.93394 1.20719 1.01528 0.89481 1.05584 1.16429 0.85693 0.82188 1.08706 1.91479 1.76751 1.48464 1.94296 0.92191 0.88200 0.92464 0.83708 0.85669 0.85952 0.84003 0.91670 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.56 10.36 -19.73 -0.20 -4.77 16 3 C 0.08 1.31 6.69 -39.24 -0.26 1.05 16 4 C -0.14 -2.33 8.72 -39.10 -0.34 -2.67 16 5 C -0.01 -0.15 4.95 -104.85 -0.52 -0.67 16 6 C -0.16 -3.07 5.02 -104.72 -0.53 -3.59 16 7 C -0.02 -0.40 9.73 -39.28 -0.38 -0.78 16 8 C -0.25 -4.15 10.01 -39.51 -0.40 -4.55 16 9 C 0.15 2.84 7.29 -39.38 -0.29 2.56 16 10 F -0.15 -2.71 17.26 2.25 0.04 -2.67 16 11 C -0.27 -5.74 9.14 -39.37 -0.36 -6.10 16 12 C 0.19 4.40 6.44 -38.75 -0.25 4.15 16 13 O -0.15 -3.96 8.91 0.34 0.00 -3.96 16 14 C -0.40 -10.54 9.49 30.88 0.29 -10.25 16 15 H 0.10 2.36 5.21 -52.49 -0.27 2.09 16 16 C 0.05 1.20 5.49 -17.52 -0.10 1.11 16 17 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 18 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C 0.12 2.44 6.94 -39.08 -0.27 2.17 16 23 F -0.12 -2.58 16.62 2.25 0.04 -2.54 16 24 C -0.15 -2.65 9.98 -39.52 -0.39 -3.04 16 25 C 0.09 1.53 7.31 -39.23 -0.29 1.24 16 26 F -0.13 -2.21 17.10 2.25 0.04 -2.17 16 27 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.15 1.97 6.29 -52.48 -0.33 1.64 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.14 3.04 5.64 -52.48 -0.30 2.75 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 35 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -29.78 324.87 -5.06 -34.84 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -2.52 Total: 2.66 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.09 Total: -18.14 kcal Atomic # 7 Polarization: -23.64 SS G_CDS: 0.76 Total: -22.88 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.20 Total: -8.73 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.11 Total: -7.38 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.78 -5.06 -34.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242045067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.405 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds