Wall clock time and date at job start Tue Mar 31 2020 14:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35997 * 116.99785 * 2 1 4 4 C 1.38405 * 119.97631 * 0.02562 * 3 2 1 5 5 C 1.39357 * 119.86760 * 180.02562 * 4 3 2 6 6 C 1.48262 * 120.09438 * 180.02562 * 5 4 3 7 7 C 1.39313 * 120.13604 * 64.99718 * 6 5 4 8 8 C 1.37979 * 119.96734 * 180.02562 * 7 6 5 9 9 C 1.38677 * 120.24205 * 0.25676 * 8 7 6 10 10 F 1.35102 * 119.85718 * 179.72556 * 9 8 7 11 11 C 1.38336 * 120.27449 * 359.48537 * 9 8 7 12 12 C 1.38703 * 120.03069 * 0.51349 * 11 9 8 13 13 O 1.35667 * 120.12230 * 179.72723 * 12 11 9 14 14 C 1.34817 * 116.99960 * 354.39346 * 13 12 11 15 15 H 1.07995 * 119.99867 * 5.06884 * 14 13 12 16 16 C 1.38634 * 119.99711 * 185.06495 * 14 13 12 17 17 N 1.31560 * 120.00540 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46934 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46998 * 120.00041 * 18 16 14 21 21 H 1.48497 * 109.46929 * 240.00172 * 18 16 14 22 22 C 1.39608 * 119.81707 * 0.27041 * 5 4 3 23 23 F 1.35098 * 120.02645 * 179.70787 * 22 5 4 24 24 C 1.38213 * 119.94501 * 359.42800 * 22 5 4 25 25 C 1.38427 * 120.13410 * 0.57604 * 24 22 5 26 26 F 1.35097 * 119.90796 * 179.69756 * 25 24 22 27 27 H 1.08999 * 109.47009 * 59.99888 * 1 2 3 28 28 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46697 * 299.99641 * 1 2 3 30 30 H 1.08005 * 120.06574 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.01535 * 0.02562 * 7 6 5 32 32 H 1.07992 * 119.87256 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.98296 * 180.28664 * 11 9 8 34 34 H 0.96995 * 120.00595 * 180.02562 * 17 16 14 35 35 H 1.07997 * 119.93041 * 180.29587 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3722 0.0005 5 6 1.9271 3.6127 0.0000 6 6 1.1239 4.8589 0.0011 7 6 0.3183 5.1708 1.0941 8 6 -0.4281 6.3313 1.0912 9 6 -0.3839 7.1875 0.0012 10 9 -1.1222 8.3189 0.0043 11 6 0.4167 6.8903 -1.0871 12 6 1.1717 5.7268 -1.0963 13 8 1.9532 5.4307 -2.1650 14 6 1.8636 6.2476 -3.2338 15 1 1.2541 7.1377 -3.1835 16 6 2.5539 5.9448 -4.3973 17 7 3.2961 4.8603 -4.4587 18 14 2.4303 7.0770 -5.8781 19 1 1.5396 8.2202 -5.5541 20 1 3.7813 7.5859 -6.2262 21 1 1.8723 6.3253 -7.0307 22 6 3.3216 3.6787 -0.0068 23 9 3.9415 4.8790 -0.0133 24 6 4.0674 2.5151 -0.0010 25 6 3.4345 1.2840 -0.0005 26 9 4.1680 0.1495 -0.0010 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2135 2.3164 0.0005 31 1 0.2780 4.5046 1.9431 32 1 -1.0524 6.5714 1.9390 33 1 0.4510 7.5627 -1.9316 34 1 3.7793 4.6487 -5.2726 35 1 5.1461 2.5665 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242045067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:05 Heat of formation + Delta-G solvation = -161.590312 kcal Electronic energy + Delta-G solvation = -27111.597786 eV Core-core repulsion = 22625.970782 eV Total energy + Delta-G solvation = -4485.627004 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.95434 -49.89206 -49.83677 -41.26624 -40.59480 -38.52600 -37.77231 -34.36684 -33.34080 -31.08478 -31.03841 -29.66999 -27.98290 -27.41781 -24.63417 -23.79540 -23.41799 -22.41822 -20.13867 -19.63352 -19.14414 -18.67292 -18.52323 -17.42252 -17.23125 -16.99626 -16.94524 -16.61255 -16.35917 -16.30498 -16.04085 -15.97791 -15.57862 -15.41517 -15.37222 -15.17822 -14.95794 -14.45456 -14.12324 -13.62225 -13.44528 -13.17258 -13.06473 -12.95345 -12.81667 -12.43904 -12.33440 -12.19577 -12.13273 -11.81029 -11.52443 -10.86430 -10.18472 -9.72817 -9.25836 -8.95894 -8.52408 -6.20610 -0.28448 0.00176 0.28548 0.51617 1.33380 1.40101 1.50257 2.09399 2.11858 2.25304 2.60720 2.90858 3.02289 3.20136 3.32073 3.40478 3.52172 3.59981 3.93850 4.03362 4.19401 4.32059 4.33446 4.42975 4.44759 4.57882 4.73632 4.76730 4.82160 4.87670 4.99070 5.08378 5.15166 5.24209 5.32275 5.48616 5.53844 5.91822 5.99730 6.19693 6.91065 7.63793 8.68022 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.005527 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.620181 B = 5065.218729 C = 6764.851885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.091 3.909 4 C -0.136 4.136 5 C -0.023 4.023 6 C -0.157 4.157 7 C -0.012 4.012 8 C -0.220 4.220 9 C 0.144 3.856 10 F -0.145 7.145 11 C -0.287 4.287 12 C 0.165 3.835 13 O -0.195 6.195 14 C -0.419 4.419 15 H 0.100 0.900 16 C -0.010 4.010 17 N -0.903 5.903 18 Si 1.011 2.989 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.267 1.267 22 C 0.092 3.908 23 F -0.141 7.141 24 C -0.151 4.151 25 C 0.079 3.921 26 F -0.131 7.131 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.128 0.872 34 H 0.274 0.726 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 -5.627 10.753 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.044 3.956 4 C -0.155 4.155 5 C -0.024 4.024 6 C -0.158 4.158 7 C -0.030 4.030 8 C -0.239 4.239 9 C 0.125 3.875 10 F -0.123 7.123 11 C -0.307 4.307 12 C 0.111 3.889 13 O -0.099 6.099 14 C -0.494 4.494 15 H 0.117 0.883 16 C -0.210 4.210 17 N -0.539 5.539 18 Si 0.831 3.169 19 H -0.178 1.178 20 H -0.194 1.194 21 H -0.191 1.191 22 C 0.072 3.928 23 F -0.120 7.120 24 C -0.171 4.171 25 C 0.059 3.941 26 F -0.110 7.110 27 H 0.078 0.922 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.192 0.808 31 H 0.190 0.810 32 H 0.184 0.816 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.555 -6.075 10.549 13.825 hybrid contribution 0.352 1.111 -1.203 1.675 sum -6.202 -4.964 9.346 12.266 Atomic orbital electron populations 1.23515 0.75527 1.06283 1.02822 1.86120 1.24219 1.24556 1.88661 1.18786 0.90315 0.86269 1.00187 1.21206 1.01627 0.88399 1.04234 1.18498 0.90426 0.93752 0.99729 1.17962 1.06273 0.95606 0.95980 1.21018 0.90883 0.95593 0.95515 1.20976 1.07228 0.96439 0.99248 1.17666 0.91321 0.83299 0.95246 1.91442 1.74828 1.49203 1.96851 1.21018 1.06325 1.01477 1.01917 1.19462 0.88846 0.91935 0.88631 1.83979 1.54069 1.50507 1.21322 1.21818 1.31984 1.05760 0.89867 0.88311 1.26440 0.94892 0.98672 1.00958 1.70172 1.28585 1.25823 1.29299 0.84630 0.78957 0.77401 0.75911 1.17765 1.19407 1.19150 1.17526 0.90416 0.80422 1.04410 1.91475 1.82849 1.43795 1.93876 1.20840 1.02329 0.89115 1.04787 1.16560 0.86396 0.82013 1.09089 1.91476 1.76856 1.48305 1.94325 0.92202 0.85408 0.90244 0.80819 0.80986 0.81608 0.85465 0.91700 0.81709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.65 10.36 -93.51 -0.97 -9.62 16 3 C 0.09 2.81 6.69 22.49 0.15 2.96 16 4 C -0.14 -4.13 8.72 22.58 0.20 -3.93 16 5 C -0.02 -0.85 4.95 -20.01 -0.10 -0.95 16 6 C -0.16 -5.97 5.02 -19.93 -0.10 -6.07 16 7 C -0.01 -0.35 9.73 22.47 0.22 -0.13 16 8 C -0.22 -6.22 10.01 22.31 0.22 -6.00 16 9 C 0.14 5.11 7.29 22.40 0.16 5.27 16 10 F -0.14 -4.91 17.26 44.97 0.78 -4.13 16 11 C -0.29 -12.34 9.14 22.40 0.20 -12.13 16 12 C 0.16 7.68 6.44 22.81 0.15 7.83 16 13 O -0.19 -10.95 8.91 -21.69 -0.19 -11.14 16 14 C -0.42 -23.44 9.49 67.91 0.64 -22.79 16 15 H 0.10 5.18 5.21 -2.91 -0.02 5.16 16 16 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 17 N -0.90 -53.31 13.67 21.61 0.30 -53.01 16 18 Si 1.01 42.00 29.55 68.60 2.03 44.02 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 22 C 0.09 3.67 6.94 22.59 0.16 3.83 16 23 F -0.14 -6.38 16.62 44.97 0.75 -5.63 16 24 C -0.15 -5.30 9.98 22.31 0.22 -5.08 16 25 C 0.08 2.66 7.31 22.50 0.16 2.83 16 26 F -0.13 -4.32 17.10 44.97 0.77 -3.55 16 27 H 0.06 1.02 7.66 -2.39 -0.02 1.01 16 28 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.17 4.10 6.29 -2.91 -0.02 4.08 16 31 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.13 5.72 5.64 -2.91 -0.02 5.70 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -69.64 324.87 8.50 -61.14 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.17 Total: 15.04 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.87 Total: -33.12 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.30 Total: -53.01 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -1.16 Total: -20.76 kcal Atomic # 9 Polarization: -15.60 SS G_CDS: 2.29 Total: -13.31 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -69.64 8.50 -61.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242045067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.446 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds