Wall clock time and date at job start Tue Mar 31 2020 14:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00062 * 2 1 4 4 H 1.48504 * 109.47411 * 270.00351 * 3 2 1 5 5 H 1.48502 * 109.46887 * 29.99951 * 3 2 1 6 6 H 1.48496 * 109.47366 * 149.99931 * 3 2 1 7 7 C 1.37879 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.38329 * 119.87954 * 89.99365 * 10 9 7 12 12 C 1.38013 * 120.12337 * 180.02562 * 11 10 9 13 13 C 1.39350 * 119.87290 * 359.97438 * 12 11 10 14 14 C 1.48373 * 120.11413 * 179.97438 * 13 12 11 15 15 C 1.39571 * 120.13751 * 294.97851 * 14 13 12 16 16 F 1.35098 * 120.08487 * 0.02562 * 15 14 13 17 17 C 1.38237 * 119.82327 * 179.77122 * 15 14 13 18 18 C 1.38295 * 120.09679 * 0.51159 * 17 15 14 19 19 C 1.38318 * 120.26952 * 359.48484 * 18 17 15 20 20 C 1.38046 * 120.17228 * 0.25671 * 19 18 17 21 21 C 1.50696 * 120.04451 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.47626 * 0.02562 * 21 20 19 23 23 F 1.39900 * 109.46968 * 120.00449 * 21 20 19 24 24 F 1.39900 * 109.47394 * 240.00302 * 21 20 19 25 25 C 1.39347 * 119.76113 * 0.27317 * 13 12 11 26 26 C 1.38017 * 119.87302 * 359.44721 * 25 13 12 27 27 H 0.97004 * 120.00227 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47318 * 59.99875 * 9 7 2 29 29 H 1.09006 * 109.46756 * 300.00201 * 9 7 2 30 30 H 1.08000 * 119.93567 * 0.02562 * 11 10 9 31 31 H 1.07992 * 120.06160 * 180.02562 * 12 11 10 32 32 H 1.07998 * 119.95137 * 180.24788 * 17 15 14 33 33 H 1.08002 * 119.86870 * 179.77027 * 18 17 15 34 34 H 1.07997 * 119.91066 * 180.23590 * 19 18 17 35 35 H 1.08001 * 120.05932 * 179.70380 * 25 13 12 36 36 H 1.07997 * 119.93621 * 180.29191 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6782 -4.1683 1.1989 12 6 3.5754 -5.2170 1.2048 13 6 4.0297 -5.7485 -0.0006 14 6 4.9947 -6.8756 -0.0006 15 6 6.2818 -6.6960 0.5086 16 9 6.6528 -5.4950 1.0036 17 6 7.1741 -7.7518 0.5098 18 6 6.7962 -8.9798 -0.0018 19 6 5.5216 -9.1622 -0.5073 20 6 4.6199 -8.1170 -0.5091 21 6 3.2318 -8.3190 -1.0601 22 9 3.0947 -9.6376 -1.5069 23 9 2.2905 -8.0670 -0.0563 24 9 3.0214 -7.4401 -2.1280 25 6 3.5791 -5.2137 -1.2059 26 6 2.6774 -4.1688 -1.2000 27 1 -0.4851 0.8401 -0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.3251 -3.7558 2.1324 31 1 3.9241 -5.6254 2.1417 32 1 8.1692 -7.6163 0.9069 33 1 7.4975 -9.8011 -0.0024 34 1 5.2314 -10.1247 -0.9019 35 1 3.9317 -5.6188 -2.1429 36 1 2.3240 -3.7566 -2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242302658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:54 Heat of formation + Delta-G solvation = -149.186313 kcal Electronic energy + Delta-G solvation = -26985.572906 eV Core-core repulsion = 22512.856569 eV Total energy + Delta-G solvation = -4472.716336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.18677 -49.00846 -47.74766 -47.57164 -39.75459 -38.30070 -33.93790 -32.60726 -31.70961 -30.38512 -30.06253 -27.11455 -26.05975 -23.86789 -22.62991 -22.23218 -21.80623 -20.18737 -18.82163 -18.52163 -18.46564 -16.86166 -16.54714 -16.34842 -16.28802 -15.78144 -15.37169 -14.81036 -14.60449 -14.48751 -14.38974 -14.28830 -13.93431 -13.77084 -13.72852 -13.62213 -13.05803 -12.83106 -12.72941 -12.69274 -12.57707 -12.17947 -11.94357 -11.39149 -11.31761 -11.09551 -10.78868 -10.53869 -10.29700 -9.65490 -9.56495 -9.46166 -9.05296 -8.44508 -8.34853 -7.80962 -6.06231 -4.10339 0.45932 0.70069 1.87076 2.00696 2.54679 2.99971 3.29925 3.36134 3.40635 3.57707 3.81414 4.06067 4.26095 4.37491 4.43053 4.46618 4.51056 4.72450 4.83516 5.13720 5.28222 5.42939 5.46115 5.54770 5.65849 5.71138 5.79836 5.92901 6.10643 6.13773 6.35959 6.55880 6.59144 6.90998 7.09430 7.12218 7.46132 7.63005 7.79551 7.89485 8.28278 8.94818 9.53680 11.03690 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018372 B = 0.003635 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.731884 B = 7700.987481 C = 8709.106106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.012 4.012 11 C -0.127 4.127 12 C -0.083 4.083 13 C -0.126 4.126 14 C -0.003 4.003 15 C 0.106 3.894 16 F -0.122 7.122 17 C -0.123 4.123 18 C -0.101 4.101 19 C -0.085 4.085 20 C -0.153 4.153 21 C 0.512 3.488 22 F -0.181 7.181 23 F -0.167 7.167 24 F -0.167 7.167 25 C -0.089 4.089 26 C -0.127 4.127 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.520 -20.947 -0.598 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.012 4.012 11 C -0.145 4.145 12 C -0.101 4.101 13 C -0.126 4.126 14 C -0.004 4.004 15 C 0.087 3.913 16 F -0.100 7.100 17 C -0.142 4.142 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.154 4.154 21 C 0.458 3.542 22 F -0.163 7.163 23 F -0.148 7.148 24 F -0.148 7.148 25 C -0.107 4.107 26 C -0.145 4.145 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.332 -20.777 -0.587 24.168 hybrid contribution 0.334 1.152 0.011 1.200 sum 12.666 -19.625 -0.577 23.365 Atomic orbital electron populations 1.69956 1.06039 1.26884 1.50339 1.25005 0.94885 0.99272 0.95096 0.86524 0.79846 0.83070 0.78215 1.20552 1.21131 1.19768 1.21032 0.93070 0.89729 1.51247 0.92400 1.18426 0.92609 0.89592 0.98630 1.20868 0.94597 0.93905 0.91864 1.21009 0.98458 0.96392 0.98650 1.20928 0.97125 0.96213 0.95816 1.18266 1.01297 0.98264 0.94805 1.18614 0.92719 0.92964 0.96127 1.17604 0.92565 0.81943 0.99202 1.91573 1.91299 1.42432 1.84740 1.21341 1.00152 0.92303 1.00420 1.20982 0.95922 0.96975 0.97988 1.21010 0.92984 0.98379 0.97951 1.19939 0.93704 0.95398 1.06403 1.18070 0.86278 0.73563 0.76327 1.93148 1.96455 1.36813 1.89846 1.93259 1.67345 1.93798 1.60403 1.93243 1.95644 1.68381 1.57499 1.21246 0.97024 0.96227 0.96182 1.21022 0.98374 0.96460 0.98624 0.92792 0.95081 0.95098 0.85892 0.86988 0.83784 0.83914 0.83820 0.86104 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.37 9.09 -34.44 -0.31 -14.68 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.04 1.14 5.10 -29.04 -0.15 0.99 16 10 C -0.01 -0.27 5.07 -104.56 -0.53 -0.80 16 11 C -0.13 -2.52 9.68 -39.63 -0.38 -2.90 16 12 C -0.08 -1.44 9.57 -39.25 -0.38 -1.82 16 13 C -0.13 -2.10 3.75 -104.90 -0.39 -2.50 16 14 C 0.00 -0.04 5.30 -104.84 -0.56 -0.60 16 15 C 0.11 1.32 7.24 -39.08 -0.28 1.04 16 16 F -0.12 -1.76 16.68 2.25 0.04 -1.72 16 17 C -0.12 -1.08 10.02 -39.56 -0.40 -1.47 16 18 C -0.10 -0.72 10.04 -39.53 -0.40 -1.12 16 19 C -0.09 -0.74 9.42 -39.62 -0.37 -1.12 16 20 C -0.15 -1.83 5.39 -104.30 -0.56 -2.39 16 21 C 0.51 6.67 2.88 36.00 0.10 6.78 16 22 F -0.18 -2.08 15.97 2.25 0.04 -2.04 16 23 F -0.17 -2.49 16.52 2.25 0.04 -2.45 16 24 F -0.17 -2.37 13.32 2.25 0.03 -2.34 16 25 C -0.09 -1.55 7.59 -39.25 -0.30 -1.85 16 26 C -0.13 -2.52 9.68 -39.63 -0.38 -2.90 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.95 7.15 -52.49 -0.38 0.57 16 35 H 0.12 1.88 6.58 -52.49 -0.35 1.54 16 36 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -30.48 328.16 -7.80 -38.29 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -3.22 Total: -1.87 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -5.39 Total: -23.77 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.14 Total: -8.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.48 -7.80 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.901 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds