Wall clock time and date at job start Tue Mar 31 2020 14:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00062 * 2 1 4 4 H 1.48504 * 109.47411 * 270.00351 * 3 2 1 5 5 H 1.48502 * 109.46887 * 29.99951 * 3 2 1 6 6 H 1.48496 * 109.47366 * 149.99931 * 3 2 1 7 7 C 1.37879 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.38329 * 119.87954 * 89.99365 * 10 9 7 12 12 C 1.38013 * 120.12337 * 180.02562 * 11 10 9 13 13 C 1.39350 * 119.87290 * 359.97438 * 12 11 10 14 14 C 1.48373 * 120.11413 * 179.97438 * 13 12 11 15 15 C 1.39571 * 120.13751 * 294.97851 * 14 13 12 16 16 F 1.35098 * 120.08487 * 0.02562 * 15 14 13 17 17 C 1.38237 * 119.82327 * 179.77122 * 15 14 13 18 18 C 1.38295 * 120.09679 * 0.51159 * 17 15 14 19 19 C 1.38318 * 120.26952 * 359.48484 * 18 17 15 20 20 C 1.38046 * 120.17228 * 0.25671 * 19 18 17 21 21 C 1.50696 * 120.04451 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.47626 * 0.02562 * 21 20 19 23 23 F 1.39900 * 109.46968 * 120.00449 * 21 20 19 24 24 F 1.39900 * 109.47394 * 240.00302 * 21 20 19 25 25 C 1.39347 * 119.76113 * 0.27317 * 13 12 11 26 26 C 1.38017 * 119.87302 * 359.44721 * 25 13 12 27 27 H 0.97004 * 120.00227 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47318 * 59.99875 * 9 7 2 29 29 H 1.09006 * 109.46756 * 300.00201 * 9 7 2 30 30 H 1.08000 * 119.93567 * 0.02562 * 11 10 9 31 31 H 1.07992 * 120.06160 * 180.02562 * 12 11 10 32 32 H 1.07998 * 119.95137 * 180.24788 * 17 15 14 33 33 H 1.08002 * 119.86870 * 179.77027 * 18 17 15 34 34 H 1.07997 * 119.91066 * 180.23590 * 19 18 17 35 35 H 1.08001 * 120.05932 * 179.70380 * 25 13 12 36 36 H 1.07997 * 119.93621 * 180.29191 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6782 -4.1683 1.1989 12 6 3.5754 -5.2170 1.2048 13 6 4.0297 -5.7485 -0.0006 14 6 4.9947 -6.8756 -0.0006 15 6 6.2818 -6.6960 0.5086 16 9 6.6528 -5.4950 1.0036 17 6 7.1741 -7.7518 0.5098 18 6 6.7962 -8.9798 -0.0018 19 6 5.5216 -9.1622 -0.5073 20 6 4.6199 -8.1170 -0.5091 21 6 3.2318 -8.3190 -1.0601 22 9 3.0947 -9.6376 -1.5069 23 9 2.2905 -8.0670 -0.0563 24 9 3.0214 -7.4401 -2.1280 25 6 3.5791 -5.2137 -1.2059 26 6 2.6774 -4.1688 -1.2000 27 1 -0.4851 0.8401 -0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.3251 -3.7558 2.1324 31 1 3.9241 -5.6254 2.1417 32 1 8.1692 -7.6163 0.9069 33 1 7.4975 -9.8011 -0.0024 34 1 5.2314 -10.1247 -0.9019 35 1 3.9317 -5.6188 -2.1429 36 1 2.3240 -3.7566 -2.1335 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242302658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:53 Heat of formation + Delta-G solvation = -163.281284 kcal Electronic energy + Delta-G solvation = -26986.184109 eV Core-core repulsion = 22512.856569 eV Total energy + Delta-G solvation = -4473.327540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.21248 -49.97625 -48.74176 -48.66026 -40.79857 -39.55938 -35.68707 -34.11107 -32.72907 -31.87125 -31.41331 -28.69165 -27.12910 -25.48238 -23.80599 -23.55356 -22.98196 -21.65873 -19.75669 -19.53106 -19.50071 -18.55358 -17.90920 -17.45966 -17.18156 -16.88321 -16.79155 -16.19369 -16.01036 -15.81417 -15.46879 -15.42651 -15.07227 -14.91347 -14.83264 -14.57107 -14.50214 -14.22707 -14.17364 -13.74017 -13.64715 -13.45930 -13.31699 -13.21875 -12.73397 -12.62395 -12.51798 -12.16748 -11.90536 -11.58761 -11.42984 -10.63420 -10.38550 -9.98148 -9.84057 -9.31905 -8.23266 -6.36893 -0.35730 -0.11665 0.45734 0.50326 1.38061 1.39147 1.50898 1.58584 2.24760 2.37307 2.61788 2.83443 2.90950 3.07634 3.20962 3.35022 3.40989 3.84617 3.89781 4.02252 4.05927 4.15679 4.27374 4.38734 4.59362 4.59791 4.75723 4.92009 5.00304 5.00684 5.11511 5.13880 5.30200 5.31160 5.45747 5.48747 5.66535 5.71092 5.98186 6.01607 6.16749 6.75065 7.31743 8.86351 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018372 B = 0.003635 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.731884 B = 7700.987481 C = 8709.106106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.055 3.945 10 C -0.046 4.046 11 C -0.136 4.136 12 C -0.084 4.084 13 C -0.108 4.108 14 C -0.036 4.036 15 C 0.086 3.914 16 F -0.141 7.141 17 C -0.110 4.110 18 C -0.076 4.076 19 C -0.076 4.076 20 C -0.160 4.160 21 C 0.507 3.493 22 F -0.171 7.171 23 F -0.184 7.184 24 F -0.178 7.178 25 C -0.088 4.088 26 C -0.136 4.136 27 H 0.267 0.733 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.175 0.825 33 H 0.191 0.809 34 H 0.170 0.830 35 H 0.141 0.859 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.036 -23.453 -0.580 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.018 3.982 10 C -0.046 4.046 11 C -0.154 4.154 12 C -0.102 4.102 13 C -0.108 4.108 14 C -0.037 4.037 15 C 0.067 3.933 16 F -0.120 7.120 17 C -0.128 4.128 18 C -0.093 4.093 19 C -0.094 4.094 20 C -0.162 4.162 21 C 0.453 3.547 22 F -0.152 7.152 23 F -0.165 7.165 24 F -0.159 7.159 25 C -0.106 4.106 26 C -0.154 4.154 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.192 0.808 33 H 0.208 0.792 34 H 0.188 0.812 35 H 0.158 0.842 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.851 -23.298 -0.572 28.185 hybrid contribution -0.677 1.691 -0.012 1.822 sum 15.174 -21.606 -0.584 26.409 Atomic orbital electron populations 1.70078 1.07654 1.28050 1.51069 1.25922 0.95782 1.03096 0.94428 0.85424 0.78562 0.78321 0.78635 1.19594 1.20259 1.19121 1.21333 0.93021 0.91141 1.51330 0.92856 1.18144 0.92882 0.91079 0.96106 1.20548 0.95996 0.94395 0.93698 1.21032 0.99237 0.97354 0.97762 1.21155 0.96210 0.95363 0.97439 1.18591 1.00213 0.98108 0.93873 1.18463 0.93023 0.92680 0.99509 1.17910 0.92872 0.82399 1.00151 1.91527 1.91413 1.43822 1.85205 1.21747 1.00594 0.91466 0.99034 1.21555 0.95626 0.97387 0.94717 1.21423 0.92922 0.98279 0.96777 1.19903 0.93418 0.95800 1.07067 1.18334 0.86799 0.73767 0.75831 1.93161 1.96462 1.35879 1.89693 1.93227 1.68216 1.93966 1.61079 1.93210 1.95770 1.68928 1.58023 1.21431 0.96231 0.95241 0.97682 1.21034 0.99257 0.97431 0.97722 0.92460 0.97608 0.97553 0.86151 0.84681 0.80766 0.79165 0.81217 0.84162 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.01 0.35 5.46 84.66 0.46 0.82 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.53 -31.15 9.09 25.60 0.23 -30.92 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.05 3.04 5.10 29.10 0.15 3.19 16 10 C -0.05 -2.17 5.07 -19.82 -0.10 -2.27 16 11 C -0.14 -5.65 9.68 22.24 0.22 -5.44 16 12 C -0.08 -2.95 9.57 22.48 0.22 -2.74 16 13 C -0.11 -3.57 3.75 -20.04 -0.08 -3.65 16 14 C -0.04 -0.92 5.30 -20.00 -0.11 -1.03 16 15 C 0.09 1.91 7.24 22.59 0.16 2.08 16 16 F -0.14 -3.87 16.68 44.97 0.75 -3.12 16 17 C -0.11 -1.39 10.02 22.28 0.22 -1.16 16 18 C -0.08 -0.62 10.04 22.30 0.22 -0.39 16 19 C -0.08 -0.97 9.42 22.24 0.21 -0.76 16 20 C -0.16 -3.42 5.39 -19.66 -0.11 -3.53 16 21 C 0.51 12.55 2.88 71.23 0.21 12.76 16 22 F -0.17 -3.54 15.97 44.97 0.72 -2.82 16 23 F -0.18 -5.43 16.52 44.97 0.74 -4.69 16 24 F -0.18 -4.97 13.32 44.97 0.60 -4.37 16 25 C -0.09 -3.12 7.59 22.48 0.17 -2.95 16 26 C -0.14 -5.71 9.68 22.24 0.22 -5.50 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.01 0.33 8.08 -2.39 -0.02 0.31 16 29 H 0.01 0.36 8.08 -2.38 -0.02 0.34 16 30 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 32 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 34 H 0.17 1.30 7.15 -2.91 -0.02 1.28 16 35 H 0.14 4.35 6.58 -2.91 -0.02 4.33 16 36 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -70.47 328.16 8.55 -61.92 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.13 Total: 3.94 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 2.30 Total: -41.49 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.28 Total: -56.52 kcal Atomic # 9 Polarization: -17.81 SS G_CDS: 2.81 Total: -15.00 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.47 8.55 -61.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.363 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds