Wall clock time and date at job start Tue Mar 31 2020 14:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99640 * 2 1 4 4 H 1.48501 * 109.46979 * 269.99889 * 3 2 1 5 5 H 1.48506 * 109.47455 * 29.99757 * 3 2 1 6 6 H 1.48500 * 109.47319 * 149.99732 * 3 2 1 7 7 C 1.37878 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99624 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99576 * 180.02562 * 7 2 1 10 10 C 1.50709 * 109.46751 * 180.02562 * 9 7 2 11 11 C 1.38340 * 119.93818 * 89.99622 * 10 9 7 12 12 C 1.38302 * 120.24103 * 180.02562 * 11 10 9 13 13 C 1.38037 * 120.12959 * 0.02562 * 12 11 10 14 14 C 1.39331 * 119.87042 * 359.97438 * 13 12 11 15 15 C 1.48368 * 120.12021 * 180.02562 * 14 13 12 16 16 C 1.39565 * 120.13641 * 114.99968 * 15 14 13 17 17 F 1.35102 * 120.08477 * 0.04013 * 16 15 14 18 18 C 1.38238 * 119.82635 * 180.02562 * 16 15 14 19 19 C 1.38295 * 120.09480 * 359.97438 * 18 16 15 20 20 C 1.38317 * 120.26927 * 0.26034 * 19 18 16 21 21 C 1.38040 * 120.17255 * 359.47928 * 20 19 18 22 22 C 1.50703 * 120.04805 * 180.23671 * 21 20 19 23 23 F 1.39898 * 109.46759 * 0.28088 * 22 21 20 24 24 F 1.39905 * 109.46955 * 120.27783 * 22 21 20 25 25 F 1.39898 * 109.47138 * 240.28037 * 22 21 20 26 26 C 1.38001 * 119.93744 * 270.30561 * 10 9 7 27 27 H 0.96996 * 120.00479 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47404 * 60.00855 * 9 7 2 29 29 H 1.08996 * 109.47544 * 300.00005 * 9 7 2 30 30 H 1.07994 * 119.87705 * 0.02562 * 11 10 9 31 31 H 1.08011 * 119.93300 * 179.97438 * 12 11 10 32 32 H 1.07991 * 120.06383 * 179.97438 * 13 12 11 33 33 H 1.08006 * 119.94982 * 180.02562 * 18 16 15 34 34 H 1.08002 * 119.86182 * 179.97438 * 19 18 16 35 35 H 1.08000 * 119.90897 * 179.74882 * 20 19 18 36 36 H 1.08000 * 120.06416 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0140 -2.6147 0.0010 11 6 4.2446 -3.2653 -1.1979 12 6 4.7052 -4.5694 -1.2053 13 6 4.9369 -5.2291 -0.0152 14 6 4.7064 -4.5786 1.1952 15 6 4.9541 -5.2823 2.4777 16 6 5.9556 -4.8346 3.3405 17 9 6.7023 -3.7581 3.0107 18 6 6.1813 -5.4954 4.5336 19 6 5.4165 -6.5969 4.8717 20 6 4.4262 -7.0469 4.0173 21 6 4.1877 -6.3922 2.8256 22 6 3.1045 -6.8817 1.8993 23 9 2.4798 -7.9998 2.4621 24 9 2.1605 -5.8669 1.7084 25 9 3.6675 -7.2327 0.6677 26 6 4.2372 -3.2663 1.1968 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8912 29 1 3.8752 -0.6801 -0.8888 30 1 4.0643 -2.7531 -2.1313 31 1 4.8832 -5.0728 -2.1442 32 1 5.2962 -6.2475 -0.0222 33 1 6.9555 -5.1505 5.2029 34 1 5.5963 -7.1106 5.8045 35 1 3.8351 -7.9101 4.2853 36 1 4.0525 -2.7590 2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242302806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:26 Heat of formation + Delta-G solvation = -144.087446 kcal Electronic energy + Delta-G solvation = -27352.878068 eV Core-core repulsion = 22880.382835 eV Total energy + Delta-G solvation = -4472.495233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.09171 -48.98613 -47.66891 -47.44997 -39.74260 -38.34770 -33.79973 -32.72075 -31.64870 -31.32809 -29.15176 -27.56752 -26.18836 -23.63737 -23.09376 -22.23397 -21.39676 -20.01830 -18.71024 -18.44300 -18.34526 -16.77718 -16.56492 -16.51133 -16.27683 -15.86866 -15.74958 -14.71272 -14.60091 -14.40563 -14.28382 -14.17540 -13.91739 -13.68327 -13.64659 -13.57170 -13.21637 -12.91296 -12.73693 -12.67487 -12.41063 -12.23886 -11.86451 -11.69787 -11.48231 -11.17603 -10.76326 -10.40116 -10.12497 -9.98973 -9.53584 -9.38435 -9.06581 -8.58584 -8.29052 -7.90696 -6.07156 -4.06603 0.50956 0.74023 1.76630 1.99311 2.62673 3.04912 3.28247 3.36172 3.39048 3.65741 3.87132 4.10851 4.23336 4.41236 4.43812 4.46894 4.56938 4.75600 4.88456 5.16779 5.24466 5.38997 5.46211 5.57191 5.68925 5.74696 5.79098 5.85077 5.95973 6.10660 6.33472 6.45400 6.56896 6.85657 6.87469 6.99149 6.99544 7.49118 7.51950 7.69136 8.49305 8.98740 9.52679 11.05742 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.004386 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.520513 B = 6382.273372 C = 6897.605005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.032 4.032 11 C -0.103 4.103 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.095 4.095 15 C -0.009 4.009 16 C 0.108 3.892 17 F -0.123 7.123 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.085 4.085 21 C -0.149 4.149 22 C 0.510 3.490 23 F -0.181 7.181 24 F -0.160 7.160 25 F -0.169 7.169 26 C -0.081 4.081 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.025 0.975 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.923 -15.878 8.177 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.093 0.907 9 C -0.022 4.022 10 C -0.032 4.032 11 C -0.121 4.121 12 C -0.142 4.142 13 C -0.132 4.132 14 C -0.095 4.095 15 C -0.010 4.010 16 C 0.089 3.911 17 F -0.101 7.101 18 C -0.142 4.142 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.150 4.150 22 C 0.456 3.544 23 F -0.163 7.163 24 F -0.141 7.141 25 F -0.151 7.151 26 C -0.099 4.099 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.753 -15.721 8.134 21.816 hybrid contribution 0.159 1.018 -0.194 1.049 sum 12.911 -14.703 7.939 21.117 Atomic orbital electron populations 1.69898 1.06246 1.26959 1.50587 1.24987 0.94721 0.98956 0.94475 0.86828 0.80433 0.83741 0.78662 1.20122 1.21222 1.18927 1.20929 0.88142 0.94753 1.51338 0.90720 1.18821 0.97573 0.88360 0.97480 1.20204 0.93061 0.98096 0.91802 1.21219 0.98131 0.94466 0.98331 1.20951 1.00905 0.95056 0.97292 1.21124 1.01537 0.99159 0.91425 1.18439 1.05556 0.95076 0.90466 1.18604 0.93791 0.93883 0.94721 1.17560 0.92245 0.86854 0.94453 1.91563 1.74098 1.51935 1.92525 1.21329 1.01162 0.96342 0.95389 1.20992 0.94845 0.95963 0.99866 1.21016 0.97684 0.99537 0.92051 1.19937 0.98748 0.99115 0.97241 1.18091 0.81595 0.75338 0.79419 1.93146 1.84086 1.54033 1.84985 1.93329 1.66222 1.59301 1.95273 1.93213 1.84547 1.92182 1.45126 1.20965 0.97893 0.92414 0.98651 0.92593 0.95366 0.95658 0.85978 0.86351 0.86003 0.83734 0.83863 0.83740 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.70 9.65 -34.44 -0.33 -15.03 16 8 H 0.07 2.36 7.98 -52.49 -0.42 1.94 16 9 C 0.01 0.36 4.17 -29.03 -0.12 0.23 16 10 C -0.03 -0.68 5.07 -104.67 -0.53 -1.21 16 11 C -0.10 -1.97 9.69 -39.52 -0.38 -2.35 16 12 C -0.12 -2.04 10.03 -39.63 -0.40 -2.44 16 13 C -0.11 -1.86 7.59 -39.25 -0.30 -2.16 16 14 C -0.10 -1.65 3.76 -104.90 -0.39 -2.04 16 15 C -0.01 -0.13 5.30 -104.84 -0.56 -0.69 16 16 C 0.11 1.41 7.24 -39.09 -0.28 1.13 16 17 F -0.12 -1.79 16.68 2.25 0.04 -1.76 16 18 C -0.12 -1.16 10.02 -39.56 -0.40 -1.56 16 19 C -0.10 -0.78 10.04 -39.53 -0.40 -1.18 16 20 C -0.08 -0.82 9.42 -39.62 -0.37 -1.19 16 21 C -0.15 -1.95 5.39 -104.30 -0.56 -2.51 16 22 C 0.51 7.33 2.88 36.01 0.10 7.43 16 23 F -0.18 -2.30 15.97 2.25 0.04 -2.27 16 24 F -0.16 -2.84 16.52 2.25 0.04 -2.80 16 25 F -0.17 -2.46 13.29 2.25 0.03 -2.43 16 26 C -0.08 -1.61 9.23 -39.25 -0.36 -1.98 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 29 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 30 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.12 1.74 6.54 -52.49 -0.34 1.39 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.14 1.09 7.15 -52.49 -0.38 0.71 16 36 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -31.80 324.52 -7.42 -39.22 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -3.18 Total: -1.13 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -5.38 Total: -23.60 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 0.14 Total: -9.26 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.80 -7.42 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.863 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds