Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99640 * 2 1 4 4 H 1.48501 * 109.46979 * 269.99889 * 3 2 1 5 5 H 1.48506 * 109.47455 * 29.99757 * 3 2 1 6 6 H 1.48500 * 109.47319 * 149.99732 * 3 2 1 7 7 C 1.37878 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99624 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99576 * 180.02562 * 7 2 1 10 10 C 1.50709 * 109.46751 * 180.02562 * 9 7 2 11 11 C 1.38340 * 119.93818 * 89.99622 * 10 9 7 12 12 C 1.38302 * 120.24103 * 180.02562 * 11 10 9 13 13 C 1.38037 * 120.12959 * 0.02562 * 12 11 10 14 14 C 1.39331 * 119.87042 * 359.97438 * 13 12 11 15 15 C 1.48368 * 120.12021 * 180.02562 * 14 13 12 16 16 C 1.39565 * 120.13641 * 114.99968 * 15 14 13 17 17 F 1.35102 * 120.08477 * 0.04013 * 16 15 14 18 18 C 1.38238 * 119.82635 * 180.02562 * 16 15 14 19 19 C 1.38295 * 120.09480 * 359.97438 * 18 16 15 20 20 C 1.38317 * 120.26927 * 0.26034 * 19 18 16 21 21 C 1.38040 * 120.17255 * 359.47928 * 20 19 18 22 22 C 1.50703 * 120.04805 * 180.23671 * 21 20 19 23 23 F 1.39898 * 109.46759 * 0.28088 * 22 21 20 24 24 F 1.39905 * 109.46955 * 120.27783 * 22 21 20 25 25 F 1.39898 * 109.47138 * 240.28037 * 22 21 20 26 26 C 1.38001 * 119.93744 * 270.30561 * 10 9 7 27 27 H 0.96996 * 120.00479 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47404 * 60.00855 * 9 7 2 29 29 H 1.08996 * 109.47544 * 300.00005 * 9 7 2 30 30 H 1.07994 * 119.87705 * 0.02562 * 11 10 9 31 31 H 1.08011 * 119.93300 * 179.97438 * 12 11 10 32 32 H 1.07991 * 120.06383 * 179.97438 * 13 12 11 33 33 H 1.08006 * 119.94982 * 180.02562 * 18 16 15 34 34 H 1.08002 * 119.86182 * 179.97438 * 19 18 16 35 35 H 1.08000 * 119.90897 * 179.74882 * 20 19 18 36 36 H 1.08000 * 120.06416 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0140 -2.6147 0.0010 11 6 4.2446 -3.2653 -1.1979 12 6 4.7052 -4.5694 -1.2053 13 6 4.9369 -5.2291 -0.0152 14 6 4.7064 -4.5786 1.1952 15 6 4.9541 -5.2823 2.4777 16 6 5.9556 -4.8346 3.3405 17 9 6.7023 -3.7581 3.0107 18 6 6.1813 -5.4954 4.5336 19 6 5.4165 -6.5969 4.8717 20 6 4.4262 -7.0469 4.0173 21 6 4.1877 -6.3922 2.8256 22 6 3.1045 -6.8817 1.8993 23 9 2.4798 -7.9998 2.4621 24 9 2.1605 -5.8669 1.7084 25 9 3.6675 -7.2327 0.6677 26 6 4.2372 -3.2663 1.1968 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8912 29 1 3.8752 -0.6801 -0.8888 30 1 4.0643 -2.7531 -2.1313 31 1 4.8832 -5.0728 -2.1442 32 1 5.2962 -6.2475 -0.0222 33 1 6.9555 -5.1505 5.2029 34 1 5.5963 -7.1106 5.8045 35 1 3.8351 -7.9101 4.2853 36 1 4.0525 -2.7590 2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242302806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = -160.372824 kcal Electronic energy + Delta-G solvation = -27353.584255 eV Core-core repulsion = 22880.382835 eV Total energy + Delta-G solvation = -4473.201420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.24069 -49.99827 -48.76588 -48.69240 -40.82125 -39.56575 -35.58178 -34.13428 -33.07924 -32.57115 -30.34881 -29.35483 -27.20714 -25.00473 -24.65508 -23.27943 -22.70917 -21.46317 -19.73908 -19.56877 -19.49744 -19.00478 -17.77408 -17.51099 -17.21569 -17.02984 -16.80661 -16.37475 -16.06040 -15.62515 -15.52278 -15.47090 -15.11806 -14.96139 -14.85234 -14.75964 -14.54754 -14.35583 -14.14564 -13.77459 -13.71849 -13.48617 -13.40391 -13.06237 -12.84388 -12.62982 -12.41306 -12.00545 -11.82095 -11.73917 -11.54716 -10.81736 -10.43044 -10.05505 -9.63673 -9.39680 -8.32531 -6.38302 -0.38078 -0.14223 0.42740 0.53266 1.33692 1.35758 1.47862 1.55991 2.22621 2.32689 2.59222 2.80633 2.88477 3.01165 3.18238 3.32725 3.38534 3.82173 3.88780 4.03888 4.06787 4.14159 4.24619 4.35319 4.53822 4.62434 4.70166 4.89342 4.91278 4.96287 5.03699 5.10702 5.14605 5.20250 5.46208 5.50636 5.53353 5.64462 5.88431 6.05081 6.24260 6.67533 7.25046 8.84264 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.004386 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.520513 B = 6382.273372 C = 6897.605005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.521 4.521 8 H 0.025 0.975 9 C 0.022 3.978 10 C -0.065 4.065 11 C -0.120 4.120 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.087 4.087 15 C -0.042 4.042 16 C 0.086 3.914 17 F -0.140 7.140 18 C -0.110 4.110 19 C -0.075 4.075 20 C -0.077 4.077 21 C -0.162 4.162 22 C 0.506 3.494 23 F -0.171 7.171 24 F -0.188 7.188 25 F -0.173 7.173 26 C -0.102 4.102 27 H 0.268 0.732 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.127 0.873 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.177 0.823 34 H 0.193 0.807 35 H 0.171 0.829 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.440 -17.404 9.894 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.559 4.559 8 H 0.043 0.957 9 C -0.015 4.015 10 C -0.065 4.065 11 C -0.138 4.138 12 C -0.134 4.134 13 C -0.131 4.131 14 C -0.087 4.087 15 C -0.044 4.044 16 C 0.067 3.933 17 F -0.118 7.118 18 C -0.128 4.128 19 C -0.092 4.092 20 C -0.095 4.095 21 C -0.163 4.163 22 C 0.452 3.548 23 F -0.152 7.152 24 F -0.170 7.170 25 F -0.154 7.154 26 C -0.120 4.120 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.145 0.855 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.195 0.805 34 H 0.210 0.790 35 H 0.188 0.812 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.284 -17.268 9.849 25.076 hybrid contribution -0.654 1.258 -0.628 1.551 sum 14.631 -16.009 9.221 23.567 Atomic orbital electron populations 1.70058 1.08313 1.28330 1.52100 1.25980 0.95615 1.03357 0.93812 0.85647 0.79386 0.78041 0.79555 1.18601 1.20616 1.17218 1.21117 0.90678 0.92998 1.51130 0.95708 1.18648 0.94424 0.90840 0.97570 1.20111 0.95544 0.97295 0.93522 1.21342 0.99075 0.95796 0.97608 1.21327 0.99119 0.93950 0.99029 1.21507 1.00460 1.00079 0.91043 1.18678 1.03421 0.93982 0.92621 1.18560 0.96025 0.95288 0.94477 1.17899 0.92453 0.87162 0.95782 1.91517 1.74496 1.52950 1.92872 1.21764 1.01448 0.95750 0.93879 1.21570 0.92469 0.94588 1.00618 1.21433 0.97954 0.99596 0.90548 1.19918 0.98455 0.99466 0.98457 1.18359 0.81620 0.75090 0.79769 1.93155 1.84012 1.53298 1.84716 1.93276 1.67501 1.60718 1.95494 1.93185 1.84480 1.92140 1.45602 1.20928 0.99519 0.94041 0.97552 0.92272 0.95482 0.94708 0.85540 0.82843 0.83585 0.80539 0.79005 0.81205 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 2 C 0.01 0.57 5.47 84.66 0.46 1.03 16 3 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 7 C -0.52 -31.50 9.65 25.60 0.25 -31.25 16 8 H 0.02 1.68 7.98 -2.91 -0.02 1.66 16 9 C 0.02 1.12 4.17 29.10 0.12 1.24 16 10 C -0.06 -2.91 5.07 -19.89 -0.10 -3.01 16 11 C -0.12 -4.70 9.69 22.31 0.22 -4.49 16 12 C -0.12 -3.78 10.03 22.24 0.22 -3.56 16 13 C -0.11 -3.63 7.59 22.49 0.17 -3.46 16 14 C -0.09 -3.07 3.76 -20.05 -0.08 -3.14 16 15 C -0.04 -1.23 5.30 -20.00 -0.11 -1.33 16 16 C 0.09 2.14 7.24 22.59 0.16 2.31 16 17 F -0.14 -4.07 16.68 44.97 0.75 -3.32 16 18 C -0.11 -1.65 10.02 22.28 0.22 -1.42 16 19 C -0.08 -0.81 10.04 22.30 0.22 -0.58 16 20 C -0.08 -1.22 9.42 22.24 0.21 -1.01 16 21 C -0.16 -4.00 5.39 -19.66 -0.11 -4.10 16 22 C 0.51 14.32 2.88 71.24 0.21 14.53 16 23 F -0.17 -4.10 15.97 44.97 0.72 -3.38 16 24 F -0.19 -6.97 16.52 44.97 0.74 -6.23 16 25 F -0.17 -4.90 13.29 44.97 0.60 -4.31 16 26 C -0.10 -4.30 9.23 22.48 0.21 -4.09 16 27 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 28 H 0.03 1.33 7.14 -2.39 -0.02 1.32 16 29 H 0.03 1.65 7.51 -2.39 -0.02 1.63 16 30 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 31 H 0.15 3.82 8.06 -2.90 -0.02 3.79 16 32 H 0.15 3.93 6.54 -2.92 -0.02 3.91 16 33 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.19 0.31 8.06 -2.91 -0.02 0.28 16 35 H 0.17 1.80 7.15 -2.91 -0.02 1.77 16 36 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -75.02 324.52 8.36 -66.66 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.08 Total: 6.58 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 2.29 Total: -42.34 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.30 Total: -60.53 kcal Atomic # 9 Polarization: -20.04 SS G_CDS: 2.81 Total: -17.23 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -75.02 8.36 -66.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.710 kcal (2) G-P(sol) polarization free energy of solvation -75.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds