Wall clock time and date at job start Tue Mar 31 2020 13:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35890 * 117.00225 * 2 1 4 4 C 1.38503 * 120.08509 * 359.97438 * 3 2 1 5 5 C 1.38399 * 120.07009 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.87860 * 180.02562 * 5 4 3 7 7 C 1.38803 * 120.24359 * 359.97438 * 5 4 3 8 8 F 1.35110 * 119.91556 * 179.97438 * 7 5 4 9 9 C 1.38115 * 120.16865 * 0.02562 * 7 5 4 10 10 C 1.39385 * 119.92711 * 359.97438 * 9 7 5 11 11 C 1.48230 * 120.12407 * 180.02562 * 10 9 7 12 12 C 1.39319 * 120.13274 * 64.97373 * 11 10 9 13 13 C 1.37978 * 119.96249 * 180.02562 * 12 11 10 14 14 C 1.38669 * 120.24976 * 359.97185 * 13 12 11 15 15 F 1.35101 * 119.86368 * 180.02562 * 14 13 12 16 16 C 1.38339 * 120.27469 * 0.05414 * 14 13 12 17 17 C 1.38703 * 120.03003 * 359.66686 * 16 14 13 18 18 O 1.35675 * 120.12172 * 180.30323 * 17 16 14 19 19 C 1.34807 * 117.00331 * 354.40416 * 18 17 16 20 20 H 1.08008 * 119.99868 * 5.06353 * 19 18 17 21 21 C 1.38633 * 120.00415 * 185.06495 * 19 18 17 22 22 N 1.31571 * 119.99769 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00428 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47025 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47514 * 119.99762 * 23 21 19 26 26 H 1.48500 * 109.47352 * 239.99816 * 23 21 19 27 27 H 1.08991 * 109.47622 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46776 * 300.00344 * 1 2 3 29 29 H 1.08999 * 109.47092 * 59.99452 * 1 2 3 30 30 H 1.07994 * 119.96543 * 359.74145 * 4 3 2 31 31 H 1.08002 * 120.03782 * 179.97438 * 9 7 5 32 32 H 1.08002 * 120.02463 * 0.02674 * 12 11 10 33 33 H 1.08004 * 119.87932 * 179.97438 * 13 12 11 34 34 H 1.08007 * 119.98488 * 179.97438 * 16 14 13 35 35 H 0.96993 * 120.00523 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2934 2.3735 -0.0005 5 6 1.9221 3.6065 -0.0011 6 9 1.1842 4.7382 -0.0011 7 6 3.3080 3.6846 -0.0005 8 9 3.9148 4.8917 -0.0016 9 6 4.0682 2.5315 0.0000 10 6 3.4424 1.2860 0.0005 11 6 4.2540 0.0456 0.0017 12 6 5.0630 -0.2598 1.0940 13 6 5.8174 -1.4151 1.0912 14 6 5.7736 -2.2753 0.0044 15 9 6.5151 -3.4046 0.0101 16 6 4.9742 -1.9816 -1.0858 17 6 4.2067 -0.8264 -1.0926 18 8 3.4173 -0.5396 -2.1581 19 6 3.5109 -1.3563 -3.2266 20 1 4.1302 -2.2399 -3.1783 21 6 2.8124 -1.0621 -4.3874 22 7 2.0576 0.0140 -4.4461 23 14 2.9415 -2.1942 -5.8675 24 1 3.8467 -3.3268 -5.5469 25 1 1.5946 -2.7178 -6.2093 26 1 3.4863 -1.4376 -7.0234 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.2149 2.3180 -0.0052 31 1 5.1463 2.5947 0.0000 32 1 5.0996 0.4072 1.9426 33 1 6.4444 -1.6503 1.9385 34 1 4.9440 -2.6548 -1.9299 35 1 1.5691 0.2201 -5.2583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242576534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:20 Heat of formation + Delta-G solvation = -144.745041 kcal Electronic energy + Delta-G solvation = -27245.902964 eV Core-core repulsion = 22761.006426 eV Total energy + Delta-G solvation = -4484.896538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.17262 -48.34769 -48.23485 -40.04574 -38.82178 -36.92574 -36.21833 -32.46607 -31.86376 -29.79479 -29.44986 -28.08432 -26.83207 -25.51181 -23.27792 -22.33849 -21.84412 -20.93063 -18.34177 -18.32738 -17.64451 -17.24634 -16.96484 -16.11724 -16.02458 -15.50640 -15.29278 -15.17610 -15.04986 -14.79365 -14.66305 -14.30744 -14.29180 -14.11505 -13.65020 -13.46440 -13.34791 -13.02946 -12.72265 -12.42813 -11.93464 -11.87615 -11.56929 -11.42558 -11.29481 -10.86637 -10.84340 -10.74301 -10.53547 -10.47718 -9.67046 -8.98784 -8.81805 -8.20809 -7.79854 -7.33029 -6.60285 -4.18309 1.10592 1.36652 1.84225 2.11442 3.04056 3.06888 3.11875 3.47831 3.66889 3.84238 4.09595 4.23331 4.54133 4.78566 4.82669 4.91900 5.00570 5.11670 5.19974 5.31867 5.45110 5.49105 5.68679 5.71717 5.77286 5.92968 5.95852 6.03293 6.11606 6.37689 6.43469 6.67493 6.79196 6.83168 6.94857 6.98469 7.20047 7.55806 7.63274 7.82794 8.84508 9.49756 10.55751 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.005787 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.532625 B = 4837.004968 C = 6499.218057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.282 6.282 3 C 0.182 3.818 4 C -0.222 4.222 5 C 0.100 3.900 6 F -0.133 7.133 7 C 0.023 3.977 8 F -0.136 7.136 9 C -0.079 4.079 10 C -0.020 4.020 11 C -0.139 4.139 12 C -0.028 4.028 13 C -0.251 4.251 14 C 0.148 3.852 15 F -0.151 7.151 16 C -0.272 4.272 17 C 0.198 3.802 18 O -0.147 6.147 19 C -0.394 4.394 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.850 5.850 23 Si 0.939 3.061 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 1.821 8.859 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.193 6.193 3 C 0.134 3.866 4 C -0.241 4.241 5 C 0.080 3.920 6 F -0.112 7.112 7 C 0.003 3.997 8 F -0.115 7.115 9 C -0.098 4.098 10 C -0.021 4.021 11 C -0.141 4.141 12 C -0.047 4.047 13 C -0.271 4.271 14 C 0.129 3.871 15 F -0.130 7.130 16 C -0.292 4.292 17 C 0.141 3.859 18 O -0.048 6.048 19 C -0.470 4.470 20 H 0.112 0.888 21 C -0.161 4.161 22 N -0.483 5.483 23 Si 0.764 3.236 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.062 1.962 8.607 8.891 hybrid contribution -0.146 -0.274 -0.932 0.983 sum -1.208 1.688 7.674 7.950 Atomic orbital electron populations 1.23091 0.78671 1.04140 1.00989 1.86258 1.20944 1.25123 1.86960 1.18722 0.91255 0.84082 0.92515 1.20888 1.01236 0.90187 1.11831 1.17266 0.87290 0.82511 1.04967 1.91487 1.76699 1.48967 1.94003 1.17281 0.88861 0.81514 1.12035 1.91477 1.83180 1.42132 1.94735 1.20894 1.00665 0.88896 0.99375 1.17642 0.89232 0.92501 1.02736 1.17452 1.05193 0.95553 0.95896 1.20498 0.93181 0.95262 0.95735 1.20419 1.08779 0.98193 0.99668 1.17534 0.91655 0.82692 0.95250 1.91420 1.75062 1.49603 1.96895 1.20979 1.05315 1.02029 1.00890 1.18890 0.88021 0.90584 0.88374 1.83998 1.50855 1.49628 1.20311 1.21440 1.30555 1.05661 0.89355 0.88831 1.25281 0.95541 0.97106 0.98124 1.70049 1.26178 1.23821 1.28301 0.85663 0.78638 0.79312 0.80006 1.18921 1.20030 1.20000 0.88204 0.93115 0.92150 0.83566 0.83216 0.85726 0.86094 0.84171 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.28 -5.25 9.44 -19.40 -0.18 -5.44 16 3 C 0.18 3.34 6.37 -38.89 -0.25 3.09 16 4 C -0.22 -3.64 9.01 -39.42 -0.36 -3.99 16 5 C 0.10 1.68 7.30 -39.31 -0.29 1.40 16 6 F -0.13 -2.19 17.17 2.25 0.04 -2.15 16 7 C 0.02 0.39 7.29 -39.42 -0.29 0.11 16 8 F -0.14 -2.28 17.17 2.25 0.04 -2.24 16 9 C -0.08 -1.33 9.70 -39.20 -0.38 -1.71 16 10 C -0.02 -0.37 4.96 -104.77 -0.52 -0.89 16 11 C -0.14 -2.72 4.95 -104.73 -0.52 -3.24 16 12 C -0.03 -0.47 9.73 -39.27 -0.38 -0.85 16 13 C -0.25 -4.18 10.01 -39.52 -0.40 -4.58 16 14 C 0.15 2.80 7.29 -39.38 -0.29 2.51 16 15 F -0.15 -2.76 17.26 2.25 0.04 -2.72 16 16 C -0.27 -5.76 9.14 -39.37 -0.36 -6.12 16 17 C 0.20 4.47 6.33 -38.75 -0.25 4.22 16 18 O -0.15 -3.84 8.70 0.35 0.00 -3.84 16 19 C -0.39 -10.32 9.49 30.88 0.29 -10.03 16 20 H 0.09 2.30 5.21 -52.48 -0.27 2.03 16 21 C 0.05 1.17 5.49 -17.52 -0.10 1.08 16 22 N -0.85 -23.30 13.67 55.48 0.76 -22.54 16 23 Si 0.94 19.60 29.55 -169.99 -5.02 14.57 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 29 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 30 H 0.15 2.02 6.29 -52.49 -0.33 1.69 16 31 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.14 3.01 5.64 -52.48 -0.30 2.71 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -28.90 324.25 -5.04 -33.94 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.52 Total: 3.18 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -3.08 Total: -17.65 kcal Atomic # 7 Polarization: -23.30 SS G_CDS: 0.76 Total: -22.54 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.18 Total: -9.28 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.12 Total: -7.12 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.90 -5.04 -33.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242576534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.802 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds