Wall clock time and date at job start Tue Mar 31 2020 14:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48499 * 109.47095 * 239.99900 * 3 2 1 5 5 H 1.48499 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47253 * 119.99715 * 3 2 1 7 7 C 1.37870 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00381 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.35874 * 116.99637 * 179.97438 * 10 9 7 12 12 C 1.38831 * 119.93648 * 180.02562 * 11 10 9 13 13 C 1.37909 * 120.07045 * 179.97438 * 12 11 10 14 14 C 1.39371 * 119.92909 * 359.97438 * 13 12 11 15 15 C 1.48376 * 120.06259 * 179.97438 * 14 13 12 16 16 C 1.39716 * 120.91951 * 359.72051 * 15 14 13 17 17 N 1.32188 * 118.95222 * 179.76475 * 16 15 14 18 18 C 1.31826 * 120.94493 * 0.51859 * 17 16 15 19 19 C 1.50706 * 118.97970 * 179.75019 * 18 17 16 20 20 F 1.39900 * 109.47124 * 284.98296 * 19 18 17 21 21 F 1.39896 * 109.47099 * 44.98150 * 19 18 17 22 22 F 1.39892 * 109.47104 * 164.98389 * 19 18 17 23 23 N 1.31833 * 122.04510 * 359.73152 * 18 17 16 24 24 C 1.32194 * 120.94447 * 359.97438 * 23 18 17 25 25 C 1.39373 * 119.87600 * 0.25408 * 14 13 12 26 26 C 1.37914 * 119.93342 * 359.50889 * 25 14 13 27 27 H 0.97006 * 119.99735 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46777 * 59.99421 * 9 7 2 29 29 H 1.09004 * 109.46846 * 299.99905 * 9 7 2 30 30 H 1.08001 * 119.96234 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.03487 * 179.97438 * 13 12 11 32 32 H 1.08000 * 120.52018 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.52403 * 179.97438 * 24 23 18 34 34 H 1.08008 * 120.03648 * 179.72402 * 25 14 13 35 35 H 1.07998 * 119.96950 * 180.23345 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.6602 -4.8409 0.0011 12 6 2.5070 -5.9410 0.0016 13 6 1.9828 -7.2166 0.0027 14 6 0.6013 -7.4006 0.0038 15 6 0.0342 -8.7717 0.0044 16 6 0.8673 -9.8933 -0.0020 17 7 0.3204 -11.0967 0.0036 18 6 -0.9894 -11.2460 0.0047 19 6 -1.5655 -12.6386 0.0053 20 9 -1.4297 -13.2001 -1.2689 21 9 -0.8809 -13.4261 0.9372 22 9 -2.9206 -12.5825 0.3481 23 7 -1.8110 -10.2150 0.0056 24 6 -1.3479 -8.9768 0.0059 25 6 -0.2464 -6.2944 -0.0016 26 6 0.2836 -5.0212 0.0023 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.5775 -5.7976 0.0012 31 1 2.6422 -8.0719 0.0028 32 1 1.9412 -9.7787 -0.0078 33 1 -2.0272 -8.1372 0.0063 34 1 -1.3174 -6.4340 -0.0053 35 1 -0.3729 -4.1636 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242662979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:28 Heat of formation + Delta-G solvation = -116.294304 kcal Electronic energy + Delta-G solvation = -25167.586290 eV Core-core repulsion = 20716.216220 eV Total energy + Delta-G solvation = -4451.370070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.44168 -47.96713 -47.92797 -41.60761 -39.66219 -37.24570 -34.39911 -33.69086 -32.96079 -31.10879 -29.77527 -27.94541 -26.56171 -25.48016 -23.84056 -23.36141 -22.00576 -21.12888 -19.40307 -18.92460 -18.87394 -17.94509 -17.56408 -16.65920 -16.51731 -15.85723 -15.42591 -15.22171 -14.89422 -14.72690 -14.68273 -14.58684 -14.34477 -14.25945 -14.12361 -14.06907 -14.04897 -13.32970 -13.22771 -12.92193 -12.65359 -12.43970 -11.94851 -11.40502 -11.33717 -11.24859 -11.12195 -10.84178 -10.78867 -10.33072 -9.89639 -9.80498 -9.46879 -9.01041 -8.71001 -7.66925 -6.38260 -4.43077 -0.14847 0.56300 1.41738 1.63856 1.92689 3.06581 3.07912 3.17538 3.21317 3.23605 3.23954 3.90086 3.91844 3.99195 4.05470 4.19147 4.20779 4.30566 4.35722 4.40422 4.87491 4.99401 5.01880 5.22478 5.37521 5.58980 5.69925 5.76689 6.01874 6.18305 6.40510 6.43424 6.45729 6.71384 6.87013 6.93574 7.31713 7.52231 7.77808 8.19961 8.67156 9.22954 10.72734 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.041496 B = 0.001981 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.607049 B =14128.663605 C =14623.479346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.071 0.929 9 C 0.190 3.810 10 O -0.309 6.309 11 C 0.179 3.821 12 C -0.169 4.169 13 C -0.054 4.054 14 C -0.133 4.133 15 C -0.074 4.074 16 C 0.141 3.859 17 N -0.469 5.469 18 C 0.205 3.795 19 C 0.550 3.450 20 F -0.166 7.166 21 F -0.162 7.162 22 F -0.157 7.157 23 N -0.467 5.467 24 C 0.142 3.858 25 C -0.049 4.049 26 C -0.213 4.213 27 H 0.269 0.731 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.125 0.875 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -20.744 0.023 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.089 0.911 9 C 0.118 3.882 10 O -0.220 6.220 11 C 0.130 3.870 12 C -0.188 4.188 13 C -0.072 4.072 14 C -0.134 4.134 15 C -0.078 4.078 16 C -0.025 4.025 17 N -0.181 5.181 18 C -0.065 4.065 19 C 0.493 3.507 20 F -0.147 7.147 21 F -0.143 7.143 22 F -0.138 7.138 23 N -0.180 5.180 24 C -0.025 4.025 25 C -0.067 4.067 26 C -0.231 4.231 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.200 0.800 33 H 0.201 0.799 34 H 0.143 0.857 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.208 -21.509 0.026 21.622 hybrid contribution 0.333 1.683 -0.009 1.716 sum -1.875 -19.825 0.018 19.914 Atomic orbital electron populations 1.69926 1.06153 1.27967 1.49063 1.24935 0.95082 0.99629 0.94451 0.86272 0.79289 0.81219 0.79067 1.19783 1.20915 1.19776 1.20906 0.94291 0.88581 1.52915 0.91070 1.20770 0.88628 0.81625 0.97177 1.86165 1.39499 1.11843 1.84514 1.19532 0.91666 0.86821 0.89027 1.20405 1.00172 0.90074 1.08107 1.20855 0.93419 0.96569 0.96398 1.18062 0.93600 0.89566 1.12221 1.20775 0.95375 0.95512 0.96120 1.23401 1.01375 0.85432 0.92303 1.67861 1.11948 1.27624 1.10689 1.22380 0.87710 0.93839 1.02566 1.17079 0.75903 0.83205 0.74472 1.93250 1.95580 1.86256 1.39625 1.93248 1.79649 1.75769 1.65660 1.93254 1.32206 1.96431 1.91939 1.67909 1.39956 0.99493 1.10610 1.23449 0.93350 0.93565 0.92096 1.20943 0.99103 0.91260 0.95397 1.21472 0.94985 0.98443 1.08229 0.92105 0.95717 0.95702 0.84777 0.85427 0.79959 0.79911 0.85673 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.53 -14.21 9.43 -34.44 -0.32 -14.53 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.19 4.63 4.49 36.01 0.16 4.79 16 10 O -0.31 -6.68 10.12 -19.35 -0.20 -6.88 16 11 C 0.18 3.11 6.69 -39.14 -0.26 2.85 16 12 C -0.17 -2.34 9.97 -39.48 -0.39 -2.74 16 13 C -0.05 -0.60 9.44 -39.28 -0.37 -0.97 16 14 C -0.13 -1.49 5.88 -104.88 -0.62 -2.11 16 15 C -0.07 -0.75 5.91 -104.62 -0.62 -1.37 16 16 C 0.14 1.37 10.70 -16.85 -0.18 1.19 16 17 N -0.47 -5.44 10.19 -10.46 -0.11 -5.55 16 18 C 0.20 2.47 7.09 -157.13 -1.11 1.36 16 19 C 0.55 6.22 3.49 36.01 0.13 6.34 16 20 F -0.17 -1.87 17.30 2.25 0.04 -1.83 16 21 F -0.16 -1.82 17.19 2.25 0.04 -1.78 16 22 F -0.16 -1.78 16.87 2.25 0.04 -1.74 16 23 N -0.47 -5.55 9.81 -10.46 -0.10 -5.66 16 24 C 0.14 1.44 10.70 -16.84 -0.18 1.26 16 25 C -0.05 -0.60 9.44 -39.28 -0.37 -0.97 16 26 C -0.21 -3.34 9.02 -39.48 -0.36 -3.69 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.03 0.62 7.66 -51.93 -0.40 0.22 16 29 H 0.03 0.63 7.65 -51.93 -0.40 0.23 16 30 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16 32 H 0.18 1.20 6.34 -52.49 -0.33 0.87 16 33 H 0.18 1.38 6.34 -52.49 -0.33 1.05 16 34 H 0.13 1.17 6.29 -52.48 -0.33 0.84 16 35 H 0.14 2.38 6.28 -52.49 -0.33 2.05 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -29.06 324.37 -6.70 -35.76 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -2.42 Total: -1.61 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -4.60 Total: -7.04 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.53 Total: -35.04 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.20 Total: -6.88 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.12 Total: -5.35 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.06 -6.70 -35.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242662979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.533 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds