Wall clock time and date at job start Tue Mar 31 2020 14:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48499 * 109.47095 * 239.99900 * 3 2 1 5 5 H 1.48499 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47253 * 119.99715 * 3 2 1 7 7 C 1.37870 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00381 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.35874 * 116.99637 * 179.97438 * 10 9 7 12 12 C 1.38831 * 119.93648 * 180.02562 * 11 10 9 13 13 C 1.37909 * 120.07045 * 179.97438 * 12 11 10 14 14 C 1.39371 * 119.92909 * 359.97438 * 13 12 11 15 15 C 1.48376 * 120.06259 * 179.97438 * 14 13 12 16 16 C 1.39716 * 120.91951 * 359.72051 * 15 14 13 17 17 N 1.32188 * 118.95222 * 179.76475 * 16 15 14 18 18 C 1.31826 * 120.94493 * 0.51859 * 17 16 15 19 19 C 1.50706 * 118.97970 * 179.75019 * 18 17 16 20 20 F 1.39900 * 109.47124 * 284.98296 * 19 18 17 21 21 F 1.39896 * 109.47099 * 44.98150 * 19 18 17 22 22 F 1.39892 * 109.47104 * 164.98389 * 19 18 17 23 23 N 1.31833 * 122.04510 * 359.73152 * 18 17 16 24 24 C 1.32194 * 120.94447 * 359.97438 * 23 18 17 25 25 C 1.39373 * 119.87600 * 0.25408 * 14 13 12 26 26 C 1.37914 * 119.93342 * 359.50889 * 25 14 13 27 27 H 0.97006 * 119.99735 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46777 * 59.99421 * 9 7 2 29 29 H 1.09004 * 109.46846 * 299.99905 * 9 7 2 30 30 H 1.08001 * 119.96234 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.03487 * 179.97438 * 13 12 11 32 32 H 1.08000 * 120.52018 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.52403 * 179.97438 * 24 23 18 34 34 H 1.08008 * 120.03648 * 179.72402 * 25 14 13 35 35 H 1.07998 * 119.96950 * 180.23345 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.6602 -4.8409 0.0011 12 6 2.5070 -5.9410 0.0016 13 6 1.9828 -7.2166 0.0027 14 6 0.6013 -7.4006 0.0038 15 6 0.0342 -8.7717 0.0044 16 6 0.8673 -9.8933 -0.0020 17 7 0.3204 -11.0967 0.0036 18 6 -0.9894 -11.2460 0.0047 19 6 -1.5655 -12.6386 0.0053 20 9 -1.4297 -13.2001 -1.2689 21 9 -0.8809 -13.4261 0.9372 22 9 -2.9206 -12.5825 0.3481 23 7 -1.8110 -10.2150 0.0056 24 6 -1.3479 -8.9768 0.0059 25 6 -0.2464 -6.2944 -0.0016 26 6 0.2836 -5.0212 0.0023 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.5775 -5.7976 0.0012 31 1 2.6422 -8.0719 0.0028 32 1 1.9412 -9.7787 -0.0078 33 1 -2.0272 -8.1372 0.0063 34 1 -1.3174 -6.4340 -0.0053 35 1 -0.3729 -4.1636 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242662979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:28 Heat of formation + Delta-G solvation = -132.379794 kcal Electronic energy + Delta-G solvation = -25168.283809 eV Core-core repulsion = 20716.216220 eV Total energy + Delta-G solvation = -4452.067589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.31969 -48.84520 -48.80815 -42.46098 -40.90542 -38.55251 -35.24018 -35.17502 -34.44585 -32.18348 -30.91028 -29.64803 -27.61649 -26.37646 -25.31339 -24.49459 -23.14184 -22.30495 -20.25095 -19.81444 -19.75162 -19.29417 -18.63196 -18.28543 -17.68212 -16.84902 -16.68756 -16.52991 -16.26117 -16.11994 -15.59694 -15.56613 -15.22488 -15.17010 -15.09296 -14.95040 -14.93025 -14.55004 -14.28085 -14.14832 -13.87486 -13.69191 -13.32188 -12.99590 -12.91690 -12.34847 -12.29323 -12.25474 -12.19477 -11.89953 -11.37632 -11.08868 -10.67484 -10.63664 -10.03972 -8.87746 -8.40434 -6.54284 -1.04249 -0.21684 0.36263 0.56996 1.06541 1.40201 1.43698 1.52250 2.18772 2.21150 2.25642 2.41996 2.68794 2.84691 2.95098 3.15779 3.17802 3.35756 3.43664 3.46962 3.51777 3.90143 4.03685 4.25674 4.41754 4.50903 4.72873 4.74185 4.92563 4.96278 5.01654 5.18139 5.37269 5.40992 5.52753 5.54561 5.77828 5.82803 6.48031 6.48206 6.75267 7.17717 8.71122 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.041496 B = 0.001981 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.607049 B =14128.663605 C =14623.479346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.210 3.790 10 O -0.333 6.333 11 C 0.129 3.871 12 C -0.167 4.167 13 C -0.042 4.042 14 C -0.111 4.111 15 C -0.078 4.078 16 C 0.152 3.848 17 N -0.483 5.483 18 C 0.198 3.802 19 C 0.551 3.449 20 F -0.166 7.166 21 F -0.162 7.162 22 F -0.159 7.159 23 N -0.485 5.485 24 C 0.144 3.856 25 C -0.047 4.047 26 C -0.228 4.228 27 H 0.274 0.726 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.145 0.855 31 H 0.174 0.826 32 H 0.218 0.782 33 H 0.206 0.794 34 H 0.154 0.846 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -22.232 0.022 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.137 3.863 10 O -0.247 6.247 11 C 0.082 3.918 12 C -0.186 4.186 13 C -0.060 4.060 14 C -0.113 4.113 15 C -0.082 4.082 16 C -0.014 4.014 17 N -0.196 5.196 18 C -0.071 4.071 19 C 0.495 3.505 20 F -0.148 7.148 21 F -0.143 7.143 22 F -0.140 7.140 23 N -0.198 5.198 24 C -0.021 4.021 25 C -0.065 4.065 26 C -0.247 4.247 27 H 0.083 0.917 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.163 0.837 31 H 0.191 0.809 32 H 0.234 0.766 33 H 0.223 0.777 34 H 0.172 0.828 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.374 -23.032 0.026 23.073 hybrid contribution 0.000 1.855 -0.008 1.855 sum -1.374 -21.177 0.017 21.221 Atomic orbital electron populations 1.70032 1.07647 1.29102 1.49446 1.25908 0.95995 1.03259 0.93530 0.85208 0.78113 0.76540 0.79469 1.18948 1.20019 1.18938 1.21298 0.94437 0.90236 1.53657 0.91460 1.20222 0.88356 0.82451 0.95243 1.86062 1.38954 1.13064 1.86589 1.19982 0.93129 0.85906 0.92763 1.20644 1.00469 0.90019 1.07449 1.21302 0.93936 0.96633 0.94096 1.18190 0.93734 0.89724 1.09662 1.20659 0.95531 0.94851 0.97163 1.23977 1.02851 0.84500 0.90049 1.67951 1.11646 1.28453 1.11534 1.22522 0.88189 0.94058 1.02354 1.17066 0.75815 0.83222 0.74420 1.93247 1.95578 1.86275 1.39676 1.93246 1.79638 1.75781 1.65663 1.93249 1.32366 1.96441 1.91952 1.67968 1.40240 0.99991 1.11568 1.23879 0.93976 0.93677 0.90578 1.21194 1.00910 0.90025 0.94389 1.21380 0.94245 0.99335 1.09718 0.91729 0.97670 0.97654 0.83681 0.80865 0.76567 0.77723 0.82804 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.30 13.29 21.44 0.28 -52.02 16 2 C 0.01 0.70 5.46 84.65 0.46 1.16 16 3 Si 0.98 41.86 29.54 68.60 2.03 43.89 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.56 -31.25 9.43 25.60 0.24 -31.01 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 10.96 4.49 71.24 0.32 11.28 16 10 O -0.33 -15.30 10.12 -92.14 -0.93 -16.24 16 11 C 0.13 4.63 6.69 22.56 0.15 4.79 16 12 C -0.17 -4.43 9.97 22.33 0.22 -4.21 16 13 C -0.04 -0.78 9.44 22.46 0.21 -0.57 16 14 C -0.11 -2.15 5.88 -20.03 -0.12 -2.27 16 15 C -0.08 -1.29 5.91 -19.86 -0.12 -1.41 16 16 C 0.15 2.31 10.70 85.00 0.91 3.22 16 17 N -0.48 -9.70 10.19 -187.00 -1.91 -11.61 16 18 C 0.20 4.34 7.09 138.73 0.98 5.32 16 19 C 0.55 11.60 3.49 71.24 0.25 11.85 16 20 F -0.17 -3.50 17.30 44.97 0.78 -2.73 16 21 F -0.16 -3.38 17.19 44.97 0.77 -2.61 16 22 F -0.16 -3.40 16.87 44.97 0.76 -2.64 16 23 N -0.48 -10.37 9.81 -186.99 -1.84 -12.21 16 24 C 0.14 2.49 10.70 85.00 0.91 3.40 16 25 C -0.05 -1.09 9.44 22.47 0.21 -0.88 16 26 C -0.23 -7.42 9.02 22.34 0.20 -7.22 16 27 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 28 H 0.01 0.30 7.66 -2.39 -0.02 0.28 16 29 H 0.01 0.31 7.65 -2.39 -0.02 0.29 16 30 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.17 1.59 6.29 -2.91 -0.02 1.58 16 32 H 0.22 1.60 6.34 -2.91 -0.02 1.58 16 33 H 0.21 2.43 6.34 -2.91 -0.02 2.41 16 34 H 0.15 2.54 6.29 -2.91 -0.02 2.52 16 35 H 0.12 4.31 6.28 -2.91 -0.02 4.29 16 Total: -1.00 -65.82 324.37 5.96 -59.86 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.18 Total: 2.86 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 4.84 Total: -6.55 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -3.46 Total: -75.84 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.93 Total: -16.24 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.31 Total: -7.98 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -65.82 5.96 -59.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242662979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.524 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds