Wall clock time and date at job start Tue Mar 31 2020 14:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86793 * 120.00189 * 2 1 4 4 H 1.48497 * 109.47352 * 90.00313 * 3 2 1 5 5 H 1.48500 * 109.47310 * 210.00107 * 3 2 1 6 6 H 1.48502 * 109.46998 * 329.99720 * 3 2 1 7 7 C 1.40045 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99833 * 9.45708 * 7 2 1 9 9 C 1.41309 * 120.00465 * 189.45243 * 7 2 1 10 10 C 1.40846 * 120.14960 * 196.92260 * 9 7 2 11 11 N 1.31881 * 119.97212 * 179.68176 * 10 9 7 12 12 C 1.32180 * 120.29014 * 0.62182 * 11 10 9 13 13 C 1.40055 * 120.29163 * 359.65787 * 12 11 10 14 14 C 1.48221 * 119.98675 * 180.02562 * 13 12 11 15 15 C 1.39476 * 120.06590 * 184.70575 * 14 13 12 16 16 C 1.37856 * 119.92430 * 179.74303 * 15 14 13 17 17 C 1.38887 * 120.06985 * 0.53194 * 16 15 14 18 18 O 1.35819 * 119.92867 * 179.74535 * 17 16 15 19 19 C 1.42902 * 117.00133 * 359.97438 * 18 17 16 20 20 C 1.53001 * 109.47413 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47238 * 59.99504 * 20 19 18 22 22 F 1.39892 * 109.47435 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.46554 * 299.99939 * 20 19 18 24 24 C 1.38886 * 120.13814 * 359.71725 * 17 16 15 25 25 C 1.37848 * 120.07391 * 0.02906 * 24 17 16 26 26 N 1.32573 * 120.02468 * 0.02562 * 13 12 11 27 27 H 0.97001 * 120.00372 * 174.92991 * 1 2 3 28 28 H 1.08000 * 120.01243 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.85575 * 179.67997 * 12 11 10 30 30 H 1.08001 * 120.03641 * 359.97247 * 15 14 13 31 31 H 1.07992 * 119.96091 * 180.24885 * 16 15 14 32 32 H 1.09000 * 109.46902 * 300.00321 * 19 18 17 33 33 H 1.08997 * 109.47373 * 59.99690 * 19 18 17 34 34 H 1.08007 * 119.96336 * 180.02562 * 24 17 16 35 35 H 1.08002 * 120.03653 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4889 2.0463 1.4000 5 1 3.5389 1.4401 -0.7001 6 1 1.4388 2.6526 -0.7001 7 6 2.0075 -1.2128 0.0005 8 1 1.4785 -2.1419 -0.1527 9 6 3.4063 -1.2212 0.2015 10 6 4.1636 -2.3576 -0.1428 11 7 5.4697 -2.3593 0.0405 12 6 6.0716 -1.3024 0.5580 13 6 5.3290 -0.1683 0.9099 14 6 6.0110 1.0133 1.4892 15 6 5.2634 2.1048 1.9309 16 6 5.9004 3.2001 2.4741 17 6 7.2857 3.2220 2.5715 18 8 7.9106 4.3048 3.1024 19 6 7.0811 5.3833 3.5389 20 6 7.9566 6.5044 4.1024 21 9 8.8286 6.9598 3.1078 22 9 7.1445 7.5601 4.5303 23 9 8.6973 6.0181 5.1850 24 6 8.0332 2.1388 2.1277 25 6 7.4019 1.0385 1.5884 26 7 4.0163 -0.1512 0.7251 27 1 -0.4851 -0.8367 -0.0742 28 1 3.6758 -3.2253 -0.5618 29 1 7.1408 -1.3133 0.7097 30 1 4.1865 2.0903 1.8510 31 1 5.3219 4.0438 2.8200 32 1 6.5042 5.7624 2.6953 33 1 6.4013 5.0285 4.3136 34 1 9.1103 2.1587 2.2052 35 1 7.9838 0.1967 1.2431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242719123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:26 Heat of formation + Delta-G solvation = -137.606502 kcal Electronic energy + Delta-G solvation = -26007.674323 eV Core-core repulsion = 21555.380087 eV Total energy + Delta-G solvation = -4452.294237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.48651 -48.04385 -47.93310 -40.39928 -39.47567 -37.51408 -34.32601 -33.02645 -31.79829 -31.25910 -30.33658 -28.47391 -26.04342 -24.34542 -23.81056 -22.58935 -21.72862 -20.74000 -19.25448 -19.01899 -18.67490 -18.07081 -18.01843 -16.41504 -16.16681 -16.09118 -15.74154 -15.28553 -14.85198 -14.76479 -14.50613 -14.39412 -14.10860 -14.10434 -14.06603 -13.71641 -13.50666 -13.28631 -13.15616 -12.83885 -12.68552 -12.21374 -11.78457 -11.60367 -11.50064 -11.26609 -11.03967 -10.65132 -10.14628 -9.83661 -9.47557 -9.28939 -8.97724 -8.70898 -7.94150 -7.61459 -7.36169 -5.03204 1.02008 1.42588 1.90952 2.30467 2.54254 2.73542 3.25261 3.32473 3.39178 3.55188 3.69482 3.87367 3.98005 4.07693 4.45492 4.47503 4.53405 4.78027 4.84020 4.89207 5.30509 5.31661 5.39898 5.55744 5.64336 5.88852 5.97406 6.09764 6.28481 6.32487 6.53418 6.63816 6.66622 6.87875 7.12838 7.17695 7.21855 7.77645 7.93278 8.31174 8.71461 9.19132 9.74897 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.003195 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.845093 B = 8761.411170 C =10056.560558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.046 3.954 3 Si 1.130 2.870 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.318 1.318 7 C -0.459 4.459 8 H 0.090 0.910 9 C 0.204 3.796 10 C -0.040 4.040 11 N -0.421 5.421 12 C -0.099 4.099 13 C 0.162 3.838 14 C -0.054 4.054 15 C -0.059 4.059 16 C -0.209 4.209 17 C 0.119 3.881 18 O -0.302 6.302 19 C 0.013 3.987 20 C 0.466 3.534 21 F -0.174 7.174 22 F -0.173 7.173 23 F -0.174 7.174 24 C -0.145 4.145 25 C -0.062 4.062 26 N -0.530 5.530 27 H 0.288 0.712 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.660 11.720 6.600 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.177 4.177 3 Si 0.962 3.038 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.250 1.250 7 C -0.492 4.492 8 H 0.108 0.892 9 C 0.079 3.921 10 C -0.211 4.211 11 N -0.132 5.132 12 C -0.256 4.256 13 C 0.019 3.981 14 C -0.056 4.056 15 C -0.078 4.078 16 C -0.228 4.228 17 C 0.075 3.925 18 O -0.216 6.216 19 C -0.065 4.065 20 C 0.411 3.589 21 F -0.155 7.155 22 F -0.154 7.154 23 F -0.155 7.155 24 C -0.163 4.163 25 C -0.081 4.081 26 N -0.252 5.252 27 H 0.100 0.900 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.582 13.290 6.695 18.857 hybrid contribution -0.165 -1.635 0.114 1.648 sum 11.417 11.655 6.810 17.679 Atomic orbital electron populations 1.70575 1.08116 1.33353 1.29425 1.27663 0.95339 1.05814 0.88865 0.82556 0.73049 0.70453 0.77720 1.20521 1.20009 1.24956 1.20731 0.90917 0.96880 1.40635 0.89188 1.19369 0.94811 0.88366 0.89588 1.23241 0.89730 1.00305 1.07827 1.67717 1.11257 1.26371 1.07873 1.22510 0.99407 0.91820 1.11888 1.20225 0.90839 0.92580 0.94494 1.18669 0.92550 0.93713 1.00676 1.21659 1.01997 0.91022 0.93072 1.21170 0.92668 1.01265 1.07703 1.18966 0.91159 0.86559 0.95862 1.85970 1.34317 1.24926 1.76424 1.23787 0.92714 0.86789 1.03176 1.20020 0.79510 0.82870 0.76469 1.93236 1.71139 1.90113 1.61031 1.93227 1.72885 1.59039 1.90242 1.93235 1.78342 1.87602 1.56370 1.20244 1.00085 0.92087 1.03921 1.21094 0.93404 0.97229 0.96386 1.67774 1.08480 1.28443 1.20487 0.90022 0.84175 0.84519 0.83613 0.85389 0.87171 0.87189 0.84808 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.19 13.65 55.55 0.76 -19.43 16 2 C 0.05 1.17 5.52 -17.34 -0.10 1.08 16 3 Si 1.13 25.63 24.54 -169.99 -4.17 21.46 16 4 H -0.28 -5.90 5.53 56.52 0.31 -5.59 16 5 H -0.27 -6.36 6.40 56.52 0.36 -6.00 16 6 H -0.32 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.46 -11.63 9.57 -37.74 -0.36 -11.99 16 8 H 0.09 2.24 8.06 -52.48 -0.42 1.82 16 9 C 0.20 5.07 6.15 -84.84 -0.52 4.55 16 10 C -0.04 -0.93 10.98 -16.54 -0.18 -1.11 16 11 N -0.42 -9.53 10.47 -12.04 -0.13 -9.66 16 12 C -0.10 -2.07 10.61 -16.72 -0.18 -2.25 16 13 C 0.16 3.48 6.73 -82.76 -0.56 2.93 16 14 C -0.05 -0.98 5.88 -104.88 -0.62 -1.59 16 15 C -0.06 -1.01 9.49 -39.26 -0.37 -1.38 16 16 C -0.21 -2.84 9.02 -39.48 -0.36 -3.19 16 17 C 0.12 1.53 6.69 -39.10 -0.26 1.27 16 18 O -0.30 -3.45 10.02 -19.17 -0.19 -3.64 16 19 C 0.01 0.11 4.70 37.16 0.17 0.28 16 20 C 0.47 4.12 3.32 37.16 0.12 4.24 16 21 F -0.17 -1.76 17.26 2.25 0.04 -1.72 16 22 F -0.17 -1.46 17.32 2.25 0.04 -1.42 16 23 F -0.17 -1.76 17.26 2.25 0.04 -1.72 16 24 C -0.14 -1.86 9.97 -39.48 -0.39 -2.25 16 25 C -0.06 -0.90 9.41 -39.27 -0.37 -1.27 16 26 N -0.53 -12.72 4.53 -7.51 -0.03 -12.75 16 27 H 0.29 6.98 8.73 -40.82 -0.36 6.62 16 28 H 0.14 2.97 8.06 -52.49 -0.42 2.54 16 29 H 0.14 2.36 6.21 -52.49 -0.33 2.04 16 30 H 0.15 2.76 4.08 -52.49 -0.21 2.55 16 31 H 0.13 1.33 6.28 -52.49 -0.33 1.00 16 32 H 0.11 0.72 7.65 -51.93 -0.40 0.33 16 33 H 0.11 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.14 1.72 6.21 -52.49 -0.33 1.39 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -28.13 313.10 -5.44 -33.56 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.54 Total: 1.31 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.97 Total: -10.70 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.60 Total: -41.84 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.19 Total: -3.64 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.12 Total: -4.87 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.17 Total: 21.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.13 -5.44 -33.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242719123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.043 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds