Wall clock time and date at job start Tue Mar 31 2020 14:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86793 * 120.00189 * 2 1 4 4 H 1.48497 * 109.47352 * 90.00313 * 3 2 1 5 5 H 1.48500 * 109.47310 * 210.00107 * 3 2 1 6 6 H 1.48502 * 109.46998 * 329.99720 * 3 2 1 7 7 C 1.40045 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99833 * 9.45708 * 7 2 1 9 9 C 1.41309 * 120.00465 * 189.45243 * 7 2 1 10 10 C 1.40846 * 120.14960 * 196.92260 * 9 7 2 11 11 N 1.31881 * 119.97212 * 179.68176 * 10 9 7 12 12 C 1.32180 * 120.29014 * 0.62182 * 11 10 9 13 13 C 1.40055 * 120.29163 * 359.65787 * 12 11 10 14 14 C 1.48221 * 119.98675 * 180.02562 * 13 12 11 15 15 C 1.39476 * 120.06590 * 184.70575 * 14 13 12 16 16 C 1.37856 * 119.92430 * 179.74303 * 15 14 13 17 17 C 1.38887 * 120.06985 * 0.53194 * 16 15 14 18 18 O 1.35819 * 119.92867 * 179.74535 * 17 16 15 19 19 C 1.42902 * 117.00133 * 359.97438 * 18 17 16 20 20 C 1.53001 * 109.47413 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47238 * 59.99504 * 20 19 18 22 22 F 1.39892 * 109.47435 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.46554 * 299.99939 * 20 19 18 24 24 C 1.38886 * 120.13814 * 359.71725 * 17 16 15 25 25 C 1.37848 * 120.07391 * 0.02906 * 24 17 16 26 26 N 1.32573 * 120.02468 * 0.02562 * 13 12 11 27 27 H 0.97001 * 120.00372 * 174.92991 * 1 2 3 28 28 H 1.08000 * 120.01243 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.85575 * 179.67997 * 12 11 10 30 30 H 1.08001 * 120.03641 * 359.97247 * 15 14 13 31 31 H 1.07992 * 119.96091 * 180.24885 * 16 15 14 32 32 H 1.09000 * 109.46902 * 300.00321 * 19 18 17 33 33 H 1.08997 * 109.47373 * 59.99690 * 19 18 17 34 34 H 1.08007 * 119.96336 * 180.02562 * 24 17 16 35 35 H 1.08002 * 120.03653 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4889 2.0463 1.4000 5 1 3.5389 1.4401 -0.7001 6 1 1.4388 2.6526 -0.7001 7 6 2.0075 -1.2128 0.0005 8 1 1.4785 -2.1419 -0.1527 9 6 3.4063 -1.2212 0.2015 10 6 4.1636 -2.3576 -0.1428 11 7 5.4697 -2.3593 0.0405 12 6 6.0716 -1.3024 0.5580 13 6 5.3290 -0.1683 0.9099 14 6 6.0110 1.0133 1.4892 15 6 5.2634 2.1048 1.9309 16 6 5.9004 3.2001 2.4741 17 6 7.2857 3.2220 2.5715 18 8 7.9106 4.3048 3.1024 19 6 7.0811 5.3833 3.5389 20 6 7.9566 6.5044 4.1024 21 9 8.8286 6.9598 3.1078 22 9 7.1445 7.5601 4.5303 23 9 8.6973 6.0181 5.1850 24 6 8.0332 2.1388 2.1277 25 6 7.4019 1.0385 1.5884 26 7 4.0163 -0.1512 0.7251 27 1 -0.4851 -0.8367 -0.0742 28 1 3.6758 -3.2253 -0.5618 29 1 7.1408 -1.3133 0.7097 30 1 4.1865 2.0903 1.8510 31 1 5.3219 4.0438 2.8200 32 1 6.5042 5.7624 2.6953 33 1 6.4013 5.0285 4.3136 34 1 9.1103 2.1587 2.2052 35 1 7.9838 0.1967 1.2431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242719123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:25 Heat of formation + Delta-G solvation = -153.737271 kcal Electronic energy + Delta-G solvation = -26008.373806 eV Core-core repulsion = 21555.380087 eV Total energy + Delta-G solvation = -4452.993719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.18700 -48.73219 -48.66556 -41.58828 -40.96899 -38.62932 -36.17101 -34.68459 -33.32778 -32.31360 -31.35413 -29.75126 -27.79643 -25.38000 -25.16329 -23.88943 -23.04324 -22.12250 -20.51096 -20.06481 -19.72100 -18.94828 -18.85671 -18.00116 -17.61718 -17.22775 -16.94535 -16.43043 -16.05335 -15.60289 -15.56363 -15.49082 -15.14936 -15.10388 -15.01520 -14.83094 -14.81933 -14.66221 -14.43077 -14.26675 -13.80519 -13.44957 -13.06489 -12.94381 -12.85137 -12.77753 -12.49829 -11.96277 -11.89831 -11.60642 -11.21065 -11.03980 -10.32389 -10.04895 -9.77423 -9.24506 -8.93907 -6.93455 -0.32315 0.33800 0.57781 0.94388 1.17116 1.43289 1.58877 1.88997 1.98475 2.27505 2.48572 2.65482 2.79164 2.91029 3.27288 3.33215 3.53017 3.71776 3.81405 3.88148 3.94444 3.99916 4.06264 4.29298 4.33849 4.50191 4.59169 4.77501 4.88406 5.06168 5.13020 5.25829 5.29277 5.43354 5.56114 5.59268 5.88784 6.09988 6.15422 6.45035 6.93258 7.40825 7.84692 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.003195 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.845093 B = 8761.411170 C =10056.560558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.022 3.978 3 Si 1.156 2.844 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.315 1.315 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.193 3.807 10 C -0.063 4.063 11 N -0.428 5.428 12 C -0.089 4.089 13 C 0.155 3.845 14 C -0.092 4.092 15 C -0.077 4.077 16 C -0.206 4.206 17 C 0.135 3.865 18 O -0.307 6.307 19 C 0.004 3.996 20 C 0.469 3.531 21 F -0.182 7.182 22 F -0.170 7.170 23 F -0.183 7.183 24 C -0.141 4.141 25 C -0.051 4.051 26 N -0.544 5.544 27 H 0.286 0.714 28 H 0.151 0.849 29 H 0.179 0.821 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.163 0.837 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.565 13.533 7.726 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.197 4.197 3 Si 0.986 3.014 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.246 1.246 7 C -0.524 4.524 8 H 0.097 0.903 9 C 0.067 3.933 10 C -0.230 4.230 11 N -0.139 5.139 12 C -0.247 4.247 13 C 0.013 3.987 14 C -0.094 4.094 15 C -0.096 4.096 16 C -0.224 4.224 17 C 0.090 3.910 18 O -0.221 6.221 19 C -0.072 4.072 20 C 0.415 3.585 21 F -0.164 7.164 22 F -0.151 7.151 23 F -0.164 7.164 24 C -0.160 4.160 25 C -0.070 4.070 26 N -0.266 5.266 27 H 0.098 0.902 28 H 0.168 0.832 29 H 0.195 0.805 30 H 0.140 0.860 31 H 0.176 0.824 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.180 0.820 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.465 15.085 7.827 22.317 hybrid contribution -0.732 -2.076 -0.119 2.204 sum 13.733 13.010 7.709 20.427 Atomic orbital electron populations 1.70594 1.08357 1.33282 1.31756 1.28344 0.95568 1.07399 0.88348 0.82229 0.71690 0.68913 0.78552 1.18673 1.21353 1.24608 1.20701 0.91629 0.96700 1.43360 0.90322 1.19512 0.94870 0.89318 0.89632 1.23356 0.90206 1.00513 1.08936 1.67789 1.10794 1.27198 1.08125 1.23263 1.01270 0.90816 1.09317 1.20896 0.90111 0.94278 0.93456 1.18667 0.94054 0.93112 1.03530 1.21547 1.01033 0.92354 0.94619 1.21366 0.93322 1.00989 1.06708 1.19051 0.90864 0.86856 0.94247 1.85962 1.35071 1.25057 1.75962 1.24113 0.92552 0.85749 1.04798 1.20079 0.79304 0.83068 0.76045 1.93223 1.71547 1.90270 1.61358 1.93237 1.72710 1.58973 1.90194 1.93222 1.78653 1.87703 1.56835 1.20565 1.01532 0.91270 1.02586 1.21252 0.91807 0.98389 0.95523 1.67761 1.10083 1.28243 1.20524 0.90230 0.83203 0.80457 0.86001 0.82354 0.84951 0.84942 0.81958 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.07 13.65 21.84 0.30 -42.77 16 2 C 0.02 1.17 5.52 85.29 0.47 1.64 16 3 Si 1.16 52.74 24.54 68.60 1.68 54.43 16 4 H -0.26 -10.96 5.53 99.48 0.55 -10.41 16 5 H -0.29 -13.46 6.40 99.48 0.64 -12.82 16 6 H -0.31 -13.92 7.11 99.48 0.71 -13.22 16 7 C -0.49 -25.99 9.57 23.46 0.22 -25.77 16 8 H 0.08 4.18 8.06 -2.90 -0.02 4.15 16 9 C 0.19 9.82 6.15 40.23 0.25 10.07 16 10 C -0.06 -2.95 10.98 85.32 0.94 -2.01 16 11 N -0.43 -18.93 10.47 -192.02 -2.01 -20.94 16 12 C -0.09 -3.51 10.61 85.08 0.90 -2.60 16 13 C 0.16 6.51 6.73 42.13 0.28 6.79 16 14 C -0.09 -3.10 5.88 -20.03 -0.12 -3.22 16 15 C -0.08 -2.48 9.49 22.48 0.21 -2.27 16 16 C -0.21 -4.82 9.02 22.33 0.20 -4.62 16 17 C 0.13 2.89 6.69 22.58 0.15 3.04 16 18 O -0.31 -5.63 10.02 -91.52 -0.92 -6.55 16 19 C 0.00 0.05 4.70 71.98 0.34 0.39 16 20 C 0.47 6.84 3.32 71.98 0.24 7.08 16 21 F -0.18 -3.20 17.26 44.97 0.78 -2.43 16 22 F -0.17 -2.40 17.32 44.97 0.78 -1.62 16 23 F -0.18 -3.20 17.26 44.97 0.78 -2.42 16 24 C -0.14 -2.97 9.97 22.33 0.22 -2.75 16 25 C -0.05 -1.27 9.41 22.47 0.21 -1.06 16 26 N -0.54 -26.23 4.53 -177.67 -0.81 -27.03 16 27 H 0.29 14.55 8.73 -92.71 -0.81 13.74 16 28 H 0.15 6.54 8.06 -2.91 -0.02 6.51 16 29 H 0.18 5.42 6.21 -2.91 -0.02 5.40 16 30 H 0.12 4.51 4.08 -2.91 -0.01 4.50 16 31 H 0.16 2.61 6.28 -2.91 -0.02 2.59 16 32 H 0.13 1.12 7.65 -2.39 -0.02 1.10 16 33 H 0.13 1.11 7.65 -2.39 -0.02 1.09 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.16 3.19 6.21 -2.91 -0.02 3.17 16 Total: -1.00 -62.34 313.10 6.02 -56.33 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.91 Total: 8.30 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.52 Total: -15.29 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -2.52 Total: -90.74 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.92 Total: -6.55 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 2.33 Total: -6.47 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 1.68 Total: 54.43 kcal Total: -62.34 6.02 -56.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242719123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.412 kcal (2) G-P(sol) polarization free energy of solvation -62.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds