Wall clock time and date at job start Tue Mar 31 2020 14:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86792 * 119.99766 * 2 1 4 4 H 1.48495 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47249 * 300.00025 * 3 2 1 6 6 H 1.48507 * 109.47365 * 59.99937 * 3 2 1 7 7 C 1.40117 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.41000 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.33679 * 119.12475 * 180.02562 * 9 7 2 11 11 C 1.31556 * 120.83722 * 179.97438 * 10 9 7 12 12 C 1.40510 * 119.08432 * 0.02562 * 11 10 9 13 13 C 1.47799 * 120.79188 * 179.97438 * 12 11 10 14 14 C 1.39778 * 120.08710 * 179.97438 * 13 12 11 15 15 C 1.37732 * 119.90712 * 180.02562 * 14 13 12 16 16 C 1.39018 * 120.09069 * 359.97438 * 15 14 13 17 17 O 1.35780 * 119.90691 * 180.02562 * 16 15 14 18 18 C 1.42905 * 116.99765 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46728 * 180.02562 * 18 17 16 20 20 F 1.39897 * 109.47114 * 60.00534 * 19 18 17 21 21 F 1.39905 * 109.46699 * 180.02562 * 19 18 17 22 22 F 1.39895 * 109.47493 * 299.99920 * 19 18 17 23 23 C 1.39007 * 120.18099 * 0.27625 * 16 15 14 24 24 C 1.37735 * 120.09508 * 359.45259 * 23 16 15 25 25 C 1.40505 * 118.40729 * 0.24580 * 12 11 10 26 26 N 1.31553 * 119.08714 * 359.49287 * 25 12 11 27 27 H 0.96994 * 120.00289 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.45802 * 180.02562 * 11 10 9 29 29 H 1.07993 * 120.04778 * 0.04170 * 14 13 12 30 30 H 1.08000 * 119.95639 * 179.97438 * 15 14 13 31 31 H 1.09000 * 109.47187 * 300.00252 * 18 17 16 32 32 H 1.09001 * 109.46558 * 60.00300 * 18 17 16 33 33 H 1.08001 * 119.95469 * 179.72342 * 23 16 15 34 34 H 1.07997 * 120.04806 * 180.25291 * 24 23 16 35 35 H 1.08001 * 120.45003 * 179.73109 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0074 -1.2135 0.0005 8 1 3.0874 -1.2134 0.0010 9 6 1.3024 -2.4345 0.0005 10 7 1.9884 -3.5819 0.0016 11 6 1.3649 -4.7403 0.0021 12 6 -0.0400 -4.7599 0.0010 13 6 -0.7789 -6.0399 0.0010 14 6 -2.1767 -6.0421 0.0005 15 6 -2.8615 -7.2371 0.0010 16 6 -2.1645 -8.4399 0.0015 17 8 -2.8434 -9.6158 0.0015 18 6 -2.0650 -10.8143 0.0015 19 6 -2.9971 -12.0276 0.0009 20 9 -3.8036 -11.9955 -1.1417 21 9 -2.2350 -13.2009 0.0015 22 9 -3.8046 -11.9960 1.1428 23 6 -0.7744 -8.4420 0.0073 24 6 -0.0819 -7.2515 0.0012 25 6 -0.7256 -3.5334 -0.0059 26 7 -0.0341 -2.4143 -0.0009 27 1 -0.4850 0.8400 -0.0004 28 1 1.9252 -5.6636 0.0034 29 1 -2.7189 -5.1082 -0.0006 30 1 -3.9415 -7.2398 0.0010 31 1 -1.4362 -10.8391 -0.8884 32 1 -1.4363 -10.8390 0.8916 33 1 -0.2366 -9.3786 0.0123 34 1 0.9980 -7.2540 0.0016 35 1 -1.8053 -3.5099 -0.0113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242721661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:34 Heat of formation + Delta-G solvation = -121.874459 kcal Electronic energy + Delta-G solvation = -25294.112038 eV Core-core repulsion = 20842.499994 eV Total energy + Delta-G solvation = -4451.612044 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.44731 -48.00828 -47.89104 -40.13694 -39.06687 -37.29375 -34.07736 -32.13488 -31.92960 -30.90774 -30.23782 -28.48805 -25.92217 -24.30872 -23.41593 -22.62898 -21.48873 -20.75520 -19.16736 -18.97239 -18.14587 -18.00783 -17.83225 -16.19108 -16.02904 -15.77373 -15.52670 -14.90375 -14.77779 -14.73931 -14.71637 -14.35789 -14.06952 -14.06721 -13.81912 -13.37613 -13.26778 -13.08127 -12.80132 -12.67043 -12.30934 -12.15409 -11.77215 -11.52609 -11.45779 -11.27600 -10.92430 -10.59750 -10.39810 -9.73844 -9.33876 -9.30590 -8.84206 -8.76159 -7.49331 -7.29165 -6.76432 -4.88289 1.35826 1.60256 2.00868 2.57597 2.85015 2.86057 2.93656 2.99234 2.99888 3.38973 3.60258 3.71313 4.05674 4.09358 4.53290 4.54585 4.60082 4.96847 4.99295 5.41117 5.54065 5.56051 5.65920 5.75951 5.76188 5.93515 6.15380 6.17680 6.45013 6.58394 6.62362 6.77567 6.88187 6.94530 7.31126 7.35616 7.50118 7.94331 8.26670 8.34569 8.91575 9.87899 10.06953 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.048002 B = 0.002041 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.174735 B =13716.160845 C =14119.538524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.058 3.942 3 Si 0.923 3.077 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.372 4.372 8 H 0.098 0.902 9 C 0.377 3.623 10 N -0.593 5.593 11 C 0.187 3.813 12 C -0.331 4.331 13 C 0.015 3.985 14 C -0.108 4.108 15 C -0.123 4.123 16 C 0.074 3.926 17 O -0.306 6.306 18 C 0.017 3.983 19 C 0.464 3.536 20 F -0.174 7.174 21 F -0.175 7.175 22 F -0.174 7.174 23 C -0.188 4.188 24 C -0.111 4.111 25 C 0.182 3.818 26 N -0.508 5.508 27 H 0.280 0.720 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -16.046 -0.010 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.405 4.405 8 H 0.116 0.884 9 C 0.146 3.854 10 N -0.311 5.311 11 C 0.012 3.988 12 C -0.341 4.341 13 C 0.013 3.987 14 C -0.127 4.127 15 C -0.142 4.142 16 C 0.031 3.969 17 O -0.220 6.220 18 C -0.061 4.061 19 C 0.410 3.590 20 F -0.156 7.156 21 F -0.156 7.156 22 F -0.156 7.156 23 C -0.206 4.206 24 C -0.130 4.130 25 C 0.004 3.996 26 N -0.223 5.223 27 H 0.091 0.909 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.620 -14.870 -0.006 15.571 hybrid contribution -0.165 -0.607 0.001 0.629 sum -4.785 -15.477 -0.005 16.200 Atomic orbital electron populations 1.70132 1.07498 1.28747 1.25018 1.26255 0.95165 1.01876 0.93735 0.86006 0.80856 0.79682 0.78899 1.17910 1.19412 1.19416 1.19557 0.95210 0.87846 1.37886 0.88421 1.19959 0.85992 0.90880 0.88616 1.68650 1.40787 0.98471 1.23187 1.22680 0.90504 0.95815 0.89806 1.19691 0.95200 0.93029 1.26157 1.18712 0.92302 0.92349 0.95308 1.21026 0.93633 0.96959 1.01066 1.20227 0.99825 0.89293 1.04861 1.18794 0.90502 0.84019 1.03579 1.85943 1.34085 1.11489 1.90530 1.23678 0.92788 0.82834 1.06754 1.20084 0.80319 0.84364 0.74235 1.93230 1.75012 1.96586 1.50746 1.93220 1.75692 1.50381 1.96310 1.93229 1.74965 1.96589 1.50798 1.20987 0.92368 0.99015 1.08255 1.20939 0.99714 0.90990 1.01307 1.23074 0.99083 0.87904 0.89527 1.69346 1.08069 1.26790 1.18130 0.90891 0.85122 0.85226 0.85630 0.87613 0.87608 0.86251 0.85829 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.18 11.40 55.56 0.63 -16.54 16 2 C 0.06 1.39 5.50 -17.33 -0.10 1.30 16 3 Si 0.92 17.30 29.56 -169.99 -5.02 12.28 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 7 C -0.37 -9.64 9.35 -37.83 -0.35 -9.99 16 8 H 0.10 2.42 7.85 -52.49 -0.41 2.01 16 9 C 0.38 10.17 7.35 -158.15 -1.16 9.01 16 10 N -0.59 -15.00 10.33 -12.41 -0.13 -15.13 16 11 C 0.19 4.07 10.70 -16.81 -0.18 3.89 16 12 C -0.33 -6.89 5.94 -104.28 -0.62 -7.51 16 13 C 0.02 0.27 5.88 -104.84 -0.62 -0.35 16 14 C -0.11 -1.69 9.45 -39.19 -0.37 -2.06 16 15 C -0.12 -1.75 9.97 -39.48 -0.39 -2.14 16 16 C 0.07 1.01 6.70 -39.01 -0.26 0.75 16 17 O -0.31 -3.74 10.02 -19.05 -0.19 -3.93 16 18 C 0.02 0.15 4.69 37.16 0.17 0.32 16 19 C 0.46 4.25 3.32 37.16 0.12 4.38 16 20 F -0.17 -1.84 17.26 2.25 0.04 -1.80 16 21 F -0.17 -1.49 17.32 2.25 0.04 -1.45 16 22 F -0.17 -1.84 17.26 2.25 0.04 -1.80 16 23 C -0.19 -2.41 9.02 -39.48 -0.36 -2.77 16 24 C -0.11 -1.66 9.45 -39.19 -0.37 -2.03 16 25 C 0.18 4.11 10.70 -16.82 -0.18 3.93 16 26 N -0.51 -13.35 7.82 -12.41 -0.10 -13.45 16 27 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 28 H 0.13 2.36 6.33 -52.49 -0.33 2.02 16 29 H 0.13 1.89 6.28 -52.49 -0.33 1.56 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.11 0.72 7.66 -51.93 -0.40 0.32 16 32 H 0.11 0.72 7.64 -51.93 -0.40 0.32 16 33 H 0.12 1.15 6.28 -52.49 -0.33 0.82 16 34 H 0.12 1.69 6.28 -52.49 -0.33 1.36 16 35 H 0.13 2.57 6.33 -52.49 -0.33 2.24 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -29.18 321.29 -6.93 -36.11 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.42 Total: 4.17 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -4.66 Total: -3.29 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.41 Total: -45.12 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.19 Total: -3.93 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.12 Total: -5.05 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.02 Total: 12.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.18 -6.93 -36.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242721661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.764 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds