Wall clock time and date at job start Tue Mar 31 2020 14:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86792 * 119.99766 * 2 1 4 4 H 1.48495 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47249 * 300.00025 * 3 2 1 6 6 H 1.48507 * 109.47365 * 59.99937 * 3 2 1 7 7 C 1.40117 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.41000 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.33679 * 119.12475 * 180.02562 * 9 7 2 11 11 C 1.31556 * 120.83722 * 179.97438 * 10 9 7 12 12 C 1.40510 * 119.08432 * 0.02562 * 11 10 9 13 13 C 1.47799 * 120.79188 * 179.97438 * 12 11 10 14 14 C 1.39778 * 120.08710 * 179.97438 * 13 12 11 15 15 C 1.37732 * 119.90712 * 180.02562 * 14 13 12 16 16 C 1.39018 * 120.09069 * 359.97438 * 15 14 13 17 17 O 1.35780 * 119.90691 * 180.02562 * 16 15 14 18 18 C 1.42905 * 116.99765 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46728 * 180.02562 * 18 17 16 20 20 F 1.39897 * 109.47114 * 60.00534 * 19 18 17 21 21 F 1.39905 * 109.46699 * 180.02562 * 19 18 17 22 22 F 1.39895 * 109.47493 * 299.99920 * 19 18 17 23 23 C 1.39007 * 120.18099 * 0.27625 * 16 15 14 24 24 C 1.37735 * 120.09508 * 359.45259 * 23 16 15 25 25 C 1.40505 * 118.40729 * 0.24580 * 12 11 10 26 26 N 1.31553 * 119.08714 * 359.49287 * 25 12 11 27 27 H 0.96994 * 120.00289 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.45802 * 180.02562 * 11 10 9 29 29 H 1.07993 * 120.04778 * 0.04170 * 14 13 12 30 30 H 1.08000 * 119.95639 * 179.97438 * 15 14 13 31 31 H 1.09000 * 109.47187 * 300.00252 * 18 17 16 32 32 H 1.09001 * 109.46558 * 60.00300 * 18 17 16 33 33 H 1.08001 * 119.95469 * 179.72342 * 23 16 15 34 34 H 1.07997 * 120.04806 * 180.25291 * 24 23 16 35 35 H 1.08001 * 120.45003 * 179.73109 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0074 -1.2135 0.0005 8 1 3.0874 -1.2134 0.0010 9 6 1.3024 -2.4345 0.0005 10 7 1.9884 -3.5819 0.0016 11 6 1.3649 -4.7403 0.0021 12 6 -0.0400 -4.7599 0.0010 13 6 -0.7789 -6.0399 0.0010 14 6 -2.1767 -6.0421 0.0005 15 6 -2.8615 -7.2371 0.0010 16 6 -2.1645 -8.4399 0.0015 17 8 -2.8434 -9.6158 0.0015 18 6 -2.0650 -10.8143 0.0015 19 6 -2.9971 -12.0276 0.0009 20 9 -3.8036 -11.9955 -1.1417 21 9 -2.2350 -13.2009 0.0015 22 9 -3.8046 -11.9960 1.1428 23 6 -0.7744 -8.4420 0.0073 24 6 -0.0819 -7.2515 0.0012 25 6 -0.7256 -3.5334 -0.0059 26 7 -0.0341 -2.4143 -0.0009 27 1 -0.4850 0.8400 -0.0004 28 1 1.9252 -5.6636 0.0034 29 1 -2.7189 -5.1082 -0.0006 30 1 -3.9415 -7.2398 0.0010 31 1 -1.4362 -10.8391 -0.8884 32 1 -1.4363 -10.8390 0.8916 33 1 -0.2366 -9.3786 0.0123 34 1 0.9980 -7.2540 0.0016 35 1 -1.8053 -3.5099 -0.0113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242721661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:33 Heat of formation + Delta-G solvation = -137.862760 kcal Electronic energy + Delta-G solvation = -25294.805342 eV Core-core repulsion = 20842.499994 eV Total energy + Delta-G solvation = -4452.305349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.18042 -48.72352 -48.66489 -41.29177 -40.67183 -38.47892 -35.78673 -33.89046 -33.34559 -32.07856 -31.24905 -29.93694 -27.49281 -25.42811 -24.73685 -24.08669 -22.78516 -22.10483 -20.06519 -19.78682 -19.71037 -18.85021 -18.80556 -17.87099 -17.16858 -16.93868 -16.85107 -16.29913 -16.08381 -15.55126 -15.48790 -15.10631 -15.10151 -15.02463 -14.83045 -14.81654 -14.54914 -14.41653 -14.17568 -13.79248 -13.71789 -13.31938 -13.08755 -12.96310 -12.78766 -12.65695 -12.36009 -11.93558 -11.71922 -11.37033 -11.17628 -11.03558 -10.29591 -9.92760 -9.30252 -8.72530 -8.50005 -6.70789 -0.01084 0.47405 1.01123 1.11833 1.24266 1.39937 1.52762 1.57467 2.05148 2.17611 2.63814 2.68565 2.91491 3.02497 3.31259 3.78640 3.90374 3.91948 3.94100 3.98271 4.04493 4.07232 4.16690 4.35484 4.44582 4.52088 4.72230 4.90003 5.04910 5.22944 5.24111 5.33173 5.39084 5.72819 5.81005 5.89264 6.09779 6.31852 6.46255 6.54615 7.14032 8.15798 8.29318 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.048002 B = 0.002041 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.174735 B =13716.160845 C =14119.538524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.020 3.980 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.418 4.418 8 H 0.093 0.907 9 C 0.351 3.649 10 N -0.619 5.619 11 C 0.170 3.830 12 C -0.308 4.308 13 C -0.025 4.025 14 C -0.106 4.106 15 C -0.136 4.136 16 C 0.093 3.907 17 O -0.317 6.317 18 C 0.009 3.991 19 C 0.467 3.533 20 F -0.184 7.184 21 F -0.169 7.169 22 F -0.185 7.185 23 C -0.184 4.184 24 C -0.103 4.103 25 C 0.158 3.842 26 N -0.540 5.540 27 H 0.288 0.712 28 H 0.168 0.832 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -18.447 -0.007 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.205 4.205 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.452 4.452 8 H 0.111 0.889 9 C 0.117 3.883 10 N -0.339 5.339 11 C -0.003 4.003 12 C -0.317 4.317 13 C -0.026 4.026 14 C -0.124 4.124 15 C -0.154 4.154 16 C 0.049 3.951 17 O -0.232 6.232 18 C -0.067 4.067 19 C 0.413 3.587 20 F -0.166 7.166 21 F -0.151 7.151 22 F -0.166 7.166 23 C -0.202 4.202 24 C -0.122 4.122 25 C -0.017 4.017 26 N -0.257 5.257 27 H 0.099 0.901 28 H 0.185 0.815 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.178 0.822 34 H 0.155 0.845 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.753 -17.365 -0.004 18.003 hybrid contribution -0.349 -0.389 0.000 0.522 sum -5.101 -17.753 -0.004 18.472 Atomic orbital electron populations 1.70189 1.09028 1.30105 1.26360 1.27162 0.95959 1.04870 0.92507 0.84867 0.79168 0.74660 0.79282 1.17751 1.18481 1.18497 1.19793 0.95233 0.89010 1.41166 0.88884 1.20347 0.86641 0.91857 0.89469 1.68659 1.41475 0.99208 1.24517 1.23308 0.91436 0.96117 0.89401 1.19993 0.95161 0.94133 1.22450 1.18651 0.92980 0.91625 0.99391 1.21096 0.93143 0.97885 1.00275 1.20410 1.00806 0.89187 1.05026 1.18933 0.90898 0.84408 1.00857 1.85926 1.35145 1.12039 1.90055 1.24035 0.92599 0.80745 1.09323 1.20179 0.80148 0.84860 0.73562 1.93215 1.75440 1.96660 1.51282 1.93234 1.75432 1.50169 1.96244 1.93215 1.75394 1.96663 1.51333 1.21327 0.92161 0.99869 1.06868 1.21151 1.00549 0.90753 0.99707 1.23554 1.00209 0.88182 0.89773 1.69302 1.08180 1.28555 1.19659 0.90127 0.81510 0.85132 0.84076 0.85028 0.85018 0.82213 0.84498 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.00 11.40 21.85 0.25 -37.75 16 2 C 0.02 0.97 5.50 85.32 0.47 1.44 16 3 Si 1.00 36.46 29.56 68.60 2.03 38.48 16 4 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.42 -22.85 9.35 23.40 0.22 -22.63 16 8 H 0.09 4.90 7.85 -2.91 -0.02 4.87 16 9 C 0.35 19.86 7.35 134.87 0.99 20.85 16 10 N -0.62 -32.41 10.33 -193.16 -2.00 -34.40 16 11 C 0.17 7.42 10.70 85.29 0.91 8.33 16 12 C -0.31 -12.85 5.94 -19.64 -0.12 -12.97 16 13 C -0.02 -0.82 5.88 -20.00 -0.12 -0.93 16 14 C -0.11 -3.13 9.45 22.52 0.21 -2.92 16 15 C -0.14 -3.48 9.97 22.34 0.22 -3.25 16 16 C 0.09 2.15 6.70 22.64 0.15 2.30 16 17 O -0.32 -6.47 10.02 -91.09 -0.91 -7.38 16 18 C 0.01 0.12 4.69 71.98 0.34 0.46 16 19 C 0.47 7.07 3.32 71.98 0.24 7.31 16 20 F -0.18 -3.43 17.26 44.97 0.78 -2.65 16 21 F -0.17 -2.36 17.32 44.97 0.78 -1.58 16 22 F -0.18 -3.43 17.26 44.97 0.78 -2.65 16 23 C -0.18 -3.87 9.02 22.34 0.20 -3.67 16 24 C -0.10 -2.75 9.45 22.52 0.21 -2.54 16 25 C 0.16 7.35 10.70 85.29 0.91 8.26 16 26 N -0.54 -29.75 7.82 -193.16 -1.51 -31.26 16 27 H 0.29 13.12 8.29 -92.71 -0.77 12.35 16 28 H 0.17 5.76 6.33 -2.91 -0.02 5.75 16 29 H 0.13 3.73 6.28 -2.91 -0.02 3.71 16 30 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.13 1.05 7.66 -2.39 -0.02 1.03 16 32 H 0.13 1.05 7.64 -2.39 -0.02 1.03 16 33 H 0.16 2.05 6.28 -2.91 -0.02 2.03 16 34 H 0.14 3.23 6.28 -2.91 -0.02 3.21 16 35 H 0.15 6.14 6.33 -2.91 -0.02 6.12 16 Total: -1.00 -67.05 321.29 6.21 -60.84 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.18 Total: 18.30 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.85 Total: 0.05 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.26 Total: -103.41 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.91 Total: -7.38 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 2.33 Total: -6.88 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.48 kcal Total: -67.05 6.21 -60.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242721661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.026 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds