Wall clock time and date at job start Tue Mar 31 2020 14:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 117.00139 * 2 1 4 4 C 1.38728 * 120.10573 * 270.25727 * 3 2 1 5 5 F 1.35104 * 119.97178 * 359.97438 * 4 3 2 6 6 C 1.38373 * 120.05560 * 180.29966 * 4 3 2 7 7 C 1.38584 * 120.26187 * 359.69681 * 6 4 3 8 8 F 1.35098 * 119.89537 * 180.02562 * 7 6 4 9 9 C 1.38176 * 120.20620 * 0.02686 * 7 6 4 10 10 C 1.39410 * 119.93621 * 359.97438 * 9 7 6 11 11 C 1.48238 * 120.12545 * 179.97438 * 10 9 7 12 12 C 1.39320 * 120.13936 * 65.22551 * 11 10 9 13 13 C 1.37973 * 119.96567 * 180.27590 * 12 11 10 14 14 C 1.38673 * 120.24791 * 359.49886 * 13 12 11 15 15 F 1.35092 * 119.86271 * 180.23004 * 14 13 12 16 16 C 1.38344 * 120.27580 * 0.25225 * 14 13 12 17 17 C 1.38696 * 120.02582 * 359.97438 * 16 14 13 18 18 O 1.35676 * 120.12215 * 179.97438 * 17 16 14 19 19 C 1.34815 * 116.99447 * 354.39384 * 18 17 16 20 20 H 1.07998 * 120.00070 * 5.08130 * 19 18 17 21 21 C 1.38639 * 119.99814 * 185.07170 * 19 18 17 22 22 N 1.31564 * 120.00205 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 120.00020 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46913 * 89.99662 * 23 21 19 25 25 H 1.48496 * 109.46813 * 209.99677 * 23 21 19 26 26 H 1.48503 * 109.46848 * 329.99710 * 23 21 19 27 27 H 1.08992 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46893 * 299.99616 * 1 2 3 29 29 H 1.09003 * 109.47314 * 59.99431 * 1 2 3 30 30 H 1.07997 * 119.86733 * 179.71971 * 6 4 3 31 31 H 1.07996 * 120.03097 * 179.97438 * 9 7 6 32 32 H 1.07997 * 120.01497 * 0.05015 * 12 11 10 33 33 H 1.08001 * 119.87269 * 179.77330 * 13 12 11 34 34 H 1.07996 * 119.98663 * 179.97438 * 16 14 13 35 35 H 0.96996 * 120.00152 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 2.3574 1.8339 -1.2001 5 9 2.0472 1.2356 -2.3711 6 6 2.9912 3.0639 -1.1990 7 6 3.3126 3.6829 -0.0014 8 9 3.9309 4.8840 -0.0089 9 6 3.0026 3.0753 1.2003 10 6 2.3641 1.8360 1.2090 11 6 2.0301 1.1801 2.4957 12 6 1.1014 1.7610 3.3566 13 6 0.7974 1.1503 4.5559 14 6 1.4054 -0.0463 4.9044 15 9 1.0985 -0.6398 6.0785 16 6 2.3252 -0.6346 4.0549 17 6 2.6428 -0.0283 2.8486 18 8 3.5450 -0.6032 2.0142 19 6 4.1832 -1.7014 2.4660 20 1 3.9085 -2.1326 3.4174 21 6 5.1921 -2.2774 1.7094 22 7 5.8146 -3.3494 2.1500 23 14 5.6676 -1.5313 0.0641 24 1 6.7374 -0.5220 0.2689 25 1 6.1623 -2.6006 -0.8398 26 1 4.4809 -0.8783 -0.5447 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.2361 3.5437 -2.1350 31 1 3.2547 3.5599 2.1319 32 1 0.6223 2.6905 3.0869 33 1 0.0799 1.6038 5.2238 34 1 2.7962 -1.5664 4.3311 35 1 6.5207 -3.7521 1.6208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242808335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:09 Heat of formation + Delta-G solvation = -140.708745 kcal Electronic energy + Delta-G solvation = -27617.011520 eV Core-core repulsion = 23132.290009 eV Total energy + Delta-G solvation = -4484.721511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.96747 -48.87742 -48.45020 -40.07485 -38.78539 -37.03938 -36.51451 -32.58681 -32.08599 -29.79344 -29.69322 -28.49992 -26.56375 -25.47540 -23.65946 -22.46258 -21.82590 -21.16443 -18.36589 -18.18407 -17.73820 -17.53943 -17.34549 -16.16667 -15.79095 -15.69000 -15.39820 -15.36178 -15.21168 -15.14883 -14.83530 -14.48787 -14.34327 -14.12006 -13.85759 -13.54014 -13.41277 -13.21009 -12.64748 -12.41045 -12.38352 -11.97221 -11.76219 -11.44726 -11.35788 -11.15959 -10.88357 -10.82026 -10.33530 -9.86077 -9.66517 -9.02815 -8.98347 -8.47855 -8.22868 -7.60727 -6.57294 -4.23423 0.85861 0.95832 1.66003 1.93470 3.16793 3.20630 3.22267 3.40131 3.72810 3.95304 4.05547 4.15628 4.47983 4.49834 4.55646 4.82573 4.88820 4.95751 5.03794 5.31765 5.37885 5.47006 5.52520 5.55990 5.70397 5.75384 5.83283 5.87196 5.97129 6.13165 6.24714 6.48421 6.58742 6.69628 6.73179 6.86501 7.33919 7.57309 7.61668 7.83262 8.76477 9.33647 10.48625 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.007020 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.567628 B = 3987.596044 C = 5549.999523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.305 6.305 3 C 0.077 3.923 4 C 0.107 3.893 5 F -0.127 7.127 6 C -0.190 4.190 7 C 0.120 3.880 8 F -0.133 7.133 9 C -0.142 4.142 10 C 0.029 3.971 11 C -0.156 4.156 12 C -0.028 4.028 13 C -0.247 4.247 14 C 0.153 3.847 15 F -0.147 7.147 16 C -0.261 4.261 17 C 0.210 3.790 18 O -0.181 6.181 19 C -0.392 4.392 20 H 0.110 0.890 21 C 0.073 3.927 22 N -0.866 5.866 23 Si 0.893 3.107 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.248 1.248 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 11.846 -3.329 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.031 3.969 4 C 0.087 3.913 5 F -0.105 7.105 6 C -0.210 4.210 7 C 0.101 3.899 8 F -0.112 7.112 9 C -0.161 4.161 10 C 0.028 3.972 11 C -0.157 4.157 12 C -0.046 4.046 13 C -0.266 4.266 14 C 0.133 3.867 15 F -0.126 7.126 16 C -0.281 4.281 17 C 0.154 3.846 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.127 0.873 21 C -0.132 4.132 22 N -0.501 5.501 23 Si 0.718 3.282 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.172 1.172 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.166 0.834 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.780 11.500 -3.627 14.916 hybrid contribution 0.287 0.113 -0.608 0.682 sum -8.493 11.614 -4.235 14.998 Atomic orbital electron populations 1.23024 0.79093 1.03560 1.00256 1.86250 1.19454 1.22475 1.93864 1.18741 1.00175 0.87730 0.90223 1.17582 1.00874 0.91718 0.81133 1.91507 1.90831 1.83022 1.45133 1.20856 1.05140 0.95932 0.99038 1.17077 0.97120 0.82331 0.93417 1.91511 1.80171 1.42135 1.97351 1.21222 1.01381 0.95934 0.97556 1.18505 0.95063 0.91656 0.91975 1.17462 1.06167 0.96401 0.95684 1.20466 0.94403 0.97896 0.91830 1.20463 1.08051 0.97949 1.00170 1.17552 0.95736 0.92017 0.81367 1.91440 1.91893 1.83634 1.45604 1.21104 1.05040 1.05253 0.96674 1.18562 0.88899 0.89379 0.87776 1.83632 1.46072 1.39958 1.38531 1.20822 1.16205 1.02097 1.07519 0.87306 1.24441 0.94479 0.95068 0.99240 1.69637 1.22688 1.19079 1.38741 0.86324 0.80292 0.79295 0.82307 1.19697 1.20488 1.17168 0.88594 0.93149 0.93996 0.83363 0.83418 0.85582 0.85801 0.83430 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.13 101.05 1.12 1.61 16 2 O -0.30 -5.76 9.22 -19.64 -0.18 -5.94 16 3 C 0.08 1.37 5.41 -38.84 -0.21 1.16 16 4 C 0.11 1.74 7.30 -39.35 -0.29 1.45 16 5 F -0.13 -2.08 17.11 2.25 0.04 -2.04 16 6 C -0.19 -2.65 9.99 -39.40 -0.39 -3.04 16 7 C 0.12 1.68 7.29 -39.48 -0.29 1.39 16 8 F -0.13 -1.78 17.26 2.25 0.04 -1.74 16 9 C -0.14 -2.08 9.71 -39.17 -0.38 -2.46 16 10 C 0.03 0.49 4.95 -104.79 -0.52 -0.03 16 11 C -0.16 -2.78 4.95 -104.72 -0.52 -3.30 16 12 C -0.03 -0.41 9.73 -39.28 -0.38 -0.79 16 13 C -0.25 -3.78 10.01 -39.52 -0.40 -4.18 16 14 C 0.15 2.76 7.29 -39.38 -0.29 2.47 16 15 F -0.15 -2.62 17.26 2.25 0.04 -2.58 16 16 C -0.26 -5.39 9.14 -39.37 -0.36 -5.75 16 17 C 0.21 4.50 6.33 -38.75 -0.25 4.26 16 18 O -0.18 -4.48 7.53 0.32 0.00 -4.48 16 19 C -0.39 -10.55 9.94 30.88 0.31 -10.24 16 20 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 21 C 0.07 2.00 5.49 -17.52 -0.10 1.91 16 22 N -0.87 -24.29 13.96 55.48 0.77 -23.52 16 23 Si 0.89 21.47 28.62 -169.99 -4.86 16.61 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.15 3.25 5.64 -52.49 -0.30 2.96 16 35 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -28.65 327.00 -4.83 -33.48 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -2.68 Total: 0.81 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.93 Total: -15.54 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.77 Total: -23.52 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.18 Total: -10.41 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.12 Total: -6.36 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.86 Total: 16.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.65 -4.83 -33.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242808335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.226 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds