Wall clock time and date at job start Tue Mar 31 2020 14:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 117.00139 * 2 1 4 4 C 1.38728 * 120.10573 * 270.25727 * 3 2 1 5 5 F 1.35104 * 119.97178 * 359.97438 * 4 3 2 6 6 C 1.38373 * 120.05560 * 180.29966 * 4 3 2 7 7 C 1.38584 * 120.26187 * 359.69681 * 6 4 3 8 8 F 1.35098 * 119.89537 * 180.02562 * 7 6 4 9 9 C 1.38176 * 120.20620 * 0.02686 * 7 6 4 10 10 C 1.39410 * 119.93621 * 359.97438 * 9 7 6 11 11 C 1.48238 * 120.12545 * 179.97438 * 10 9 7 12 12 C 1.39320 * 120.13936 * 65.22551 * 11 10 9 13 13 C 1.37973 * 119.96567 * 180.27590 * 12 11 10 14 14 C 1.38673 * 120.24791 * 359.49886 * 13 12 11 15 15 F 1.35092 * 119.86271 * 180.23004 * 14 13 12 16 16 C 1.38344 * 120.27580 * 0.25225 * 14 13 12 17 17 C 1.38696 * 120.02582 * 359.97438 * 16 14 13 18 18 O 1.35676 * 120.12215 * 179.97438 * 17 16 14 19 19 C 1.34815 * 116.99447 * 354.39384 * 18 17 16 20 20 H 1.07998 * 120.00070 * 5.08130 * 19 18 17 21 21 C 1.38639 * 119.99814 * 185.07170 * 19 18 17 22 22 N 1.31564 * 120.00205 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 120.00020 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46913 * 89.99662 * 23 21 19 25 25 H 1.48496 * 109.46813 * 209.99677 * 23 21 19 26 26 H 1.48503 * 109.46848 * 329.99710 * 23 21 19 27 27 H 1.08992 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46893 * 299.99616 * 1 2 3 29 29 H 1.09003 * 109.47314 * 59.99431 * 1 2 3 30 30 H 1.07997 * 119.86733 * 179.71971 * 6 4 3 31 31 H 1.07996 * 120.03097 * 179.97438 * 9 7 6 32 32 H 1.07997 * 120.01497 * 0.05015 * 12 11 10 33 33 H 1.08001 * 119.87269 * 179.77330 * 13 12 11 34 34 H 1.07996 * 119.98663 * 179.97438 * 16 14 13 35 35 H 0.96996 * 120.00152 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 2.3574 1.8339 -1.2001 5 9 2.0472 1.2356 -2.3711 6 6 2.9912 3.0639 -1.1990 7 6 3.3126 3.6829 -0.0014 8 9 3.9309 4.8840 -0.0089 9 6 3.0026 3.0753 1.2003 10 6 2.3641 1.8360 1.2090 11 6 2.0301 1.1801 2.4957 12 6 1.1014 1.7610 3.3566 13 6 0.7974 1.1503 4.5559 14 6 1.4054 -0.0463 4.9044 15 9 1.0985 -0.6398 6.0785 16 6 2.3252 -0.6346 4.0549 17 6 2.6428 -0.0283 2.8486 18 8 3.5450 -0.6032 2.0142 19 6 4.1832 -1.7014 2.4660 20 1 3.9085 -2.1326 3.4174 21 6 5.1921 -2.2774 1.7094 22 7 5.8146 -3.3494 2.1500 23 14 5.6676 -1.5313 0.0641 24 1 6.7374 -0.5220 0.2689 25 1 6.1623 -2.6006 -0.8398 26 1 4.4809 -0.8783 -0.5447 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.2361 3.5437 -2.1350 31 1 3.2547 3.5599 2.1319 32 1 0.6223 2.6905 3.0869 33 1 0.0799 1.6038 5.2238 34 1 2.7962 -1.5664 4.3311 35 1 6.5207 -3.7521 1.6208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242808335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:08 Heat of formation + Delta-G solvation = -155.865162 kcal Electronic energy + Delta-G solvation = -27617.668751 eV Core-core repulsion = 23132.290009 eV Total energy + Delta-G solvation = -4485.378743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.09877 -50.03226 -49.90501 -41.46647 -40.24380 -38.37387 -37.94926 -34.52295 -33.41525 -31.21076 -30.93797 -29.85400 -27.75054 -27.29641 -24.94414 -23.71434 -23.32871 -22.53565 -20.08709 -19.67468 -19.08411 -18.78637 -18.58439 -17.46355 -17.25619 -16.94924 -16.88973 -16.63391 -16.56251 -16.47843 -16.05241 -15.89196 -15.70980 -15.50559 -15.43889 -15.07545 -14.93335 -14.44918 -14.25689 -13.96034 -13.64970 -13.34243 -13.06055 -12.91867 -12.68438 -12.57258 -12.35976 -12.27766 -12.14423 -11.59953 -11.05966 -10.96175 -10.21934 -9.74226 -9.59467 -9.13611 -8.56568 -6.27388 -0.35762 -0.21943 0.24468 0.48569 1.26506 1.28507 1.48939 2.04597 2.22645 2.51668 2.58417 2.79309 2.88717 2.98106 3.28484 3.31162 3.42659 3.80077 3.89341 3.96157 4.18748 4.26707 4.34873 4.40007 4.41223 4.52691 4.63735 4.72014 4.74884 4.85798 5.00887 5.11477 5.22615 5.24882 5.33685 5.51462 5.63582 5.79061 6.04847 6.40964 6.78366 7.49226 8.54553 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.007020 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.567628 B = 3987.596044 C = 5549.999523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.341 6.341 3 C 0.062 3.938 4 C 0.089 3.911 5 F -0.132 7.132 6 C -0.172 4.172 7 C 0.124 3.876 8 F -0.125 7.125 9 C -0.130 4.130 10 C 0.004 3.996 11 C -0.140 4.140 12 C -0.013 4.013 13 C -0.210 4.210 14 C 0.142 3.858 15 F -0.147 7.147 16 C -0.282 4.282 17 C 0.184 3.816 18 O -0.209 6.209 19 C -0.395 4.395 20 H 0.084 0.916 21 C 0.025 3.975 22 N -0.915 5.915 23 Si 0.950 3.050 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.260 1.260 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.177 0.823 31 H 0.171 0.829 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.118 0.882 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 15.785 -3.639 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.258 6.258 3 C 0.017 3.983 4 C 0.069 3.931 5 F -0.111 7.111 6 C -0.192 4.192 7 C 0.104 3.896 8 F -0.104 7.104 9 C -0.149 4.149 10 C 0.003 3.997 11 C -0.142 4.142 12 C -0.031 4.031 13 C -0.229 4.229 14 C 0.122 3.878 15 F -0.126 7.126 16 C -0.302 4.302 17 C 0.132 3.868 18 O -0.114 6.114 19 C -0.472 4.472 20 H 0.101 0.899 21 C -0.175 4.175 22 N -0.554 5.554 23 Si 0.773 3.227 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.184 1.184 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.194 0.806 31 H 0.188 0.812 32 H 0.195 0.805 33 H 0.185 0.815 34 H 0.135 0.865 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.661 15.477 -3.912 19.196 hybrid contribution 0.542 -0.844 -0.345 1.061 sum -10.118 14.633 -4.257 18.293 Atomic orbital electron populations 1.23218 0.77082 1.04469 1.01571 1.86187 1.21745 1.23742 1.94157 1.19021 1.00603 0.87464 0.91190 1.17712 1.02124 0.92658 0.80634 1.91488 1.91041 1.83314 1.45235 1.21121 1.02964 0.94704 1.00393 1.17009 0.96891 0.82489 0.93189 1.91541 1.79947 1.41591 1.97296 1.21392 0.99807 0.94803 0.98869 1.18505 0.97181 0.92825 0.91162 1.17805 1.05207 0.94705 0.96454 1.21051 0.92569 0.98996 0.90478 1.21008 1.06134 0.95508 1.00296 1.17717 0.95802 0.93113 0.81148 1.91443 1.91784 1.83898 1.45427 1.21057 1.06488 1.04874 0.97780 1.19103 0.88866 0.90819 0.87974 1.83608 1.48240 1.39987 1.39573 1.20684 1.16618 1.03115 1.06738 0.89874 1.25068 0.94801 0.95622 1.02017 1.69711 1.24434 1.20959 1.40343 0.85491 0.79410 0.78755 0.79077 1.18914 1.19484 1.18437 0.88033 0.92152 0.92238 0.80589 0.81199 0.80540 0.81506 0.86455 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.13 113.37 1.26 2.06 16 2 O -0.34 -12.83 9.22 -93.18 -0.86 -13.69 16 3 C 0.06 2.14 5.41 22.75 0.12 2.26 16 4 C 0.09 2.72 7.30 22.42 0.16 2.89 16 5 F -0.13 -4.19 17.11 44.97 0.77 -3.42 16 6 C -0.17 -4.25 9.99 22.38 0.22 -4.03 16 7 C 0.12 3.00 7.29 22.34 0.16 3.16 16 8 F -0.13 -2.83 17.26 44.97 0.78 -2.05 16 9 C -0.13 -3.33 9.71 22.54 0.22 -3.12 16 10 C 0.00 0.13 4.95 -19.97 -0.10 0.03 16 11 C -0.14 -4.69 4.95 -19.93 -0.10 -4.79 16 12 C -0.01 -0.33 9.73 22.47 0.22 -0.11 16 13 C -0.21 -5.43 10.01 22.31 0.22 -5.21 16 14 C 0.14 4.89 7.29 22.40 0.16 5.05 16 15 F -0.15 -5.06 17.26 44.97 0.78 -4.28 16 16 C -0.28 -12.01 9.14 22.40 0.20 -11.80 16 17 C 0.18 8.01 6.33 22.81 0.14 8.15 16 18 O -0.21 -10.81 7.53 -21.77 -0.16 -10.97 16 19 C -0.40 -22.71 9.94 67.92 0.68 -22.04 16 20 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 21 C 0.02 1.43 5.49 84.83 0.47 1.90 16 22 N -0.91 -54.32 13.96 21.61 0.30 -54.01 16 23 Si 0.95 46.01 28.62 68.60 1.96 47.97 16 24 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -12.95 7.11 99.48 0.71 -12.24 16 27 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.12 5.67 5.64 -2.91 -0.02 5.65 16 35 H 0.29 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -67.12 327.00 8.78 -58.34 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.17 Total: 7.71 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 4.05 Total: -25.59 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.30 Total: -54.01 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.02 Total: -24.67 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 2.32 Total: -9.75 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.96 Total: 47.97 kcal Total: -67.12 8.78 -58.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242808335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.524 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds