Wall clock time and date at job start Tue Mar 31 2020 14:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 120.00521 * 2 1 4 4 H 1.48502 * 109.46989 * 270.00471 * 3 2 1 5 5 H 1.48500 * 109.46861 * 30.00042 * 3 2 1 6 6 H 1.48497 * 109.47421 * 149.99893 * 3 2 1 7 7 C 1.38647 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00100 * 359.97438 * 7 2 1 9 9 O 1.34812 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.35728 * 117.00097 * 174.90350 * 9 7 2 11 11 C 1.39451 * 120.37629 * 5.61219 * 10 9 7 12 12 C 1.38185 * 118.46067 * 179.72901 * 11 10 9 13 13 C 1.39497 * 119.14226 * 0.49245 * 12 11 10 14 14 C 1.48154 * 119.65960 * 179.77205 * 13 12 11 15 15 C 1.39372 * 120.16411 * 6.01001 * 14 13 12 16 16 C 1.37969 * 119.93964 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.85359 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.47171 * 89.99938 * 17 16 15 19 19 F 1.39895 * 109.47331 * 210.00152 * 17 16 15 20 20 F 1.39900 * 109.46809 * 329.99908 * 17 16 15 21 21 C 1.38452 * 120.29304 * 0.02562 * 16 15 14 22 22 C 1.38106 * 120.34472 * 359.95478 * 21 16 15 23 23 C 1.38793 * 120.04871 * 0.02562 * 22 21 16 24 24 N 1.39372 * 120.14746 * 180.02562 * 23 22 21 25 25 N 1.32727 * 120.68317 * 359.49836 * 13 12 11 26 26 C 1.31686 * 121.67481 * 0.24945 * 25 13 12 27 27 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.76992 * 0.02562 * 11 10 9 29 29 H 1.07999 * 120.42565 * 180.26838 * 12 11 10 30 30 H 1.07995 * 120.02900 * 0.25088 * 15 14 13 31 31 H 1.08006 * 119.82675 * 179.97438 * 21 16 15 32 32 H 1.07999 * 119.97572 * 180.02562 * 22 21 16 33 33 H 0.97003 * 120.00468 * 25.59061 * 24 23 22 34 34 H 0.97006 * 120.00320 * 205.59843 * 24 23 22 35 35 H 1.08001 * 119.60840 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2008 0.0005 8 1 1.4687 -2.1360 0.0014 9 8 3.3568 -1.2008 0.0000 10 6 3.9731 -2.4053 0.1080 11 6 3.2264 -3.5830 0.0960 12 6 3.8948 -4.7877 0.2028 13 6 5.2841 -4.7849 0.3287 14 6 6.0119 -6.0697 0.4491 15 6 5.3292 -7.2769 0.3114 16 6 6.0117 -8.4707 0.4239 17 6 5.2716 -9.7749 0.2742 18 9 5.2806 -10.1646 -1.0694 19 9 5.8970 -10.7576 1.0489 20 9 3.9501 -9.6131 0.7040 21 6 7.3735 -8.4757 0.6737 22 6 8.0619 -7.2865 0.8118 23 6 7.3896 -6.0773 0.7009 24 7 8.0824 -4.8759 0.8394 25 7 5.9612 -3.6433 0.3363 26 6 5.3549 -2.4790 0.2313 27 1 -0.4850 0.8401 0.0004 28 1 2.1510 -3.5544 0.0006 29 1 3.3484 -5.7192 0.1926 30 1 4.2677 -7.2778 0.1125 31 1 7.9002 -9.4146 0.7607 32 1 9.1242 -7.2974 1.0062 33 1 9.0319 -4.8383 0.6444 34 1 7.6152 -4.0774 1.1309 35 1 5.9388 -1.5706 0.2409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243004652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:38 Heat of formation + Delta-G solvation = -108.893872 kcal Electronic energy + Delta-G solvation = -26101.939183 eV Core-core repulsion = 21650.890020 eV Total energy + Delta-G solvation = -4451.049163 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.10462 -47.63317 -47.56287 -40.28549 -39.15684 -37.39971 -34.77364 -32.78054 -32.23891 -31.40010 -29.96173 -28.60166 -25.67654 -25.20594 -23.65825 -23.01410 -21.63235 -21.01567 -18.59549 -18.43822 -18.38096 -18.09446 -17.38137 -16.92621 -16.60378 -15.84094 -15.42705 -14.66529 -14.61573 -14.49331 -14.39148 -14.12354 -14.03831 -13.88878 -13.83975 -13.74385 -13.65644 -13.31684 -13.28257 -12.94474 -12.69393 -12.41400 -12.30373 -11.87783 -11.41620 -11.29374 -11.08728 -10.59832 -10.43261 -9.88794 -9.44487 -9.27315 -9.07048 -8.92755 -8.01477 -7.20343 -6.67178 -4.32032 0.90993 1.21948 1.77555 2.10446 2.75081 3.08172 3.11193 3.23784 3.57288 3.79033 4.02746 4.06325 4.09641 4.38247 4.43797 4.52889 4.68687 4.75206 4.87311 5.00141 5.14749 5.30809 5.49658 5.61856 5.70527 5.78720 5.89342 6.06603 6.17507 6.23924 6.35819 6.54598 6.77715 6.82172 7.08485 7.47409 7.62869 7.72302 8.08951 8.39863 8.65366 9.21611 10.38959 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002913 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.136697 B = 9610.510396 C =10766.230524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.197 6.197 10 C 0.111 3.889 11 C -0.181 4.181 12 C -0.105 4.105 13 C 0.065 3.935 14 C -0.086 4.086 15 C -0.025 4.025 16 C -0.244 4.244 17 C 0.514 3.486 18 F -0.182 7.182 19 F -0.183 7.183 20 F -0.180 7.180 21 C -0.032 4.032 22 C -0.202 4.202 23 C 0.266 3.734 24 N -0.856 5.856 25 N -0.443 5.443 26 C 0.034 3.966 27 H 0.284 0.716 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.389 0.611 34 H 0.417 0.583 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.537 -13.744 1.478 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.099 6.099 10 C 0.055 3.945 11 C -0.206 4.206 12 C -0.125 4.125 13 C -0.069 4.069 14 C -0.092 4.092 15 C -0.045 4.045 16 C -0.248 4.248 17 C 0.460 3.540 18 F -0.164 7.164 19 F -0.164 7.164 20 F -0.162 7.162 21 C -0.052 4.052 22 C -0.224 4.224 23 C 0.155 3.845 24 N -0.401 5.401 25 N -0.154 5.154 26 C -0.128 4.128 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.217 0.783 34 H 0.258 0.742 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.206 -13.344 1.548 19.552 hybrid contribution -0.883 0.706 -0.183 1.145 sum 13.323 -12.638 1.366 18.414 Atomic orbital electron populations 1.69637 1.05706 1.29107 1.45584 1.24529 0.95092 0.99166 0.95068 0.86138 0.80371 0.80979 0.79250 1.19582 1.20491 1.18091 1.20825 0.76540 0.96933 1.52529 0.87383 1.83551 1.22971 1.25269 1.78135 1.20213 0.93098 0.86158 0.95069 1.21621 1.01767 0.91422 1.05833 1.21723 0.93966 0.98210 0.98607 1.18922 0.90144 0.90137 1.07724 1.18010 0.92118 0.91163 1.07874 1.20674 0.99757 0.89793 0.94285 1.19415 0.95502 0.91318 1.18541 1.18278 0.77112 0.85024 0.73598 1.93206 1.96377 1.92308 1.34464 1.93152 1.82385 1.65446 1.75463 1.93178 1.37615 1.95639 1.89750 1.20575 0.91894 0.98463 0.94247 1.20611 1.00422 0.90565 1.10846 1.17918 0.90535 0.87162 0.88859 1.43233 1.11596 1.10449 1.74801 1.66796 1.38760 0.97588 1.12274 1.21712 0.89661 0.95316 1.06113 0.90557 0.83702 0.85658 0.84767 0.85300 0.85286 0.78297 0.74179 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.40 13.96 55.48 0.77 -22.62 16 2 C 0.07 1.75 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 20.03 28.62 -169.99 -4.86 15.16 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.21 9.95 30.88 0.31 -9.90 16 8 H 0.11 2.86 5.48 -52.49 -0.29 2.57 16 9 O -0.20 -4.72 8.59 0.17 0.00 -4.72 16 10 C 0.11 2.32 6.67 -38.88 -0.26 2.06 16 11 C -0.18 -3.55 9.25 -39.15 -0.36 -3.91 16 12 C -0.11 -1.80 9.44 -39.13 -0.37 -2.17 16 13 C 0.07 1.10 6.71 -82.94 -0.56 0.54 16 14 C -0.09 -1.27 5.89 -104.72 -0.62 -1.89 16 15 C -0.03 -0.34 8.75 -39.26 -0.34 -0.68 16 16 C -0.24 -3.01 5.45 -104.64 -0.57 -3.58 16 17 C 0.51 6.18 3.36 36.01 0.12 6.30 16 18 F -0.18 -2.27 17.30 2.25 0.04 -2.23 16 19 F -0.18 -2.12 16.45 2.25 0.04 -2.08 16 20 F -0.18 -2.28 16.45 2.25 0.04 -2.24 16 21 C -0.03 -0.35 9.38 -39.55 -0.37 -0.72 16 22 C -0.20 -2.18 9.93 -39.42 -0.39 -2.57 16 23 C 0.27 3.45 6.76 -83.55 -0.56 2.89 16 24 N -0.86 -9.98 8.41 32.55 0.27 -9.70 16 25 N -0.44 -7.53 6.74 -9.63 -0.06 -7.59 16 26 C 0.03 0.62 11.14 -17.36 -0.19 0.43 16 27 H 0.28 7.07 8.31 -40.82 -0.34 6.74 16 28 H 0.15 2.93 5.75 -52.49 -0.30 2.63 16 29 H 0.13 1.80 6.23 -52.49 -0.33 1.48 16 30 H 0.13 1.68 5.76 -52.49 -0.30 1.38 16 31 H 0.13 1.12 7.59 -52.48 -0.40 0.72 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.39 3.41 8.91 -40.82 -0.36 3.05 16 34 H 0.42 5.46 5.88 -40.82 -0.24 5.22 16 35 H 0.15 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -27.17 316.03 -5.47 -32.64 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -2.20 Total: 10.16 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -4.27 Total: -11.54 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.98 Total: -39.92 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: 0.00 Total: -4.72 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.55 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.86 Total: 15.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.17 -5.47 -32.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243004652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.249 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds