Wall clock time and date at job start Tue Mar 31 2020 14:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 120.00521 * 2 1 4 4 H 1.48502 * 109.46989 * 270.00471 * 3 2 1 5 5 H 1.48500 * 109.46861 * 30.00042 * 3 2 1 6 6 H 1.48497 * 109.47421 * 149.99893 * 3 2 1 7 7 C 1.38647 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00100 * 359.97438 * 7 2 1 9 9 O 1.34812 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.35728 * 117.00097 * 174.90350 * 9 7 2 11 11 C 1.39451 * 120.37629 * 5.61219 * 10 9 7 12 12 C 1.38185 * 118.46067 * 179.72901 * 11 10 9 13 13 C 1.39497 * 119.14226 * 0.49245 * 12 11 10 14 14 C 1.48154 * 119.65960 * 179.77205 * 13 12 11 15 15 C 1.39372 * 120.16411 * 6.01001 * 14 13 12 16 16 C 1.37969 * 119.93964 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.85359 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.47171 * 89.99938 * 17 16 15 19 19 F 1.39895 * 109.47331 * 210.00152 * 17 16 15 20 20 F 1.39900 * 109.46809 * 329.99908 * 17 16 15 21 21 C 1.38452 * 120.29304 * 0.02562 * 16 15 14 22 22 C 1.38106 * 120.34472 * 359.95478 * 21 16 15 23 23 C 1.38793 * 120.04871 * 0.02562 * 22 21 16 24 24 N 1.39372 * 120.14746 * 180.02562 * 23 22 21 25 25 N 1.32727 * 120.68317 * 359.49836 * 13 12 11 26 26 C 1.31686 * 121.67481 * 0.24945 * 25 13 12 27 27 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.76992 * 0.02562 * 11 10 9 29 29 H 1.07999 * 120.42565 * 180.26838 * 12 11 10 30 30 H 1.07995 * 120.02900 * 0.25088 * 15 14 13 31 31 H 1.08006 * 119.82675 * 179.97438 * 21 16 15 32 32 H 1.07999 * 119.97572 * 180.02562 * 22 21 16 33 33 H 0.97003 * 120.00468 * 25.59061 * 24 23 22 34 34 H 0.97006 * 120.00320 * 205.59843 * 24 23 22 35 35 H 1.08001 * 119.60840 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2008 0.0005 8 1 1.4687 -2.1360 0.0014 9 8 3.3568 -1.2008 0.0000 10 6 3.9731 -2.4053 0.1080 11 6 3.2264 -3.5830 0.0960 12 6 3.8948 -4.7877 0.2028 13 6 5.2841 -4.7849 0.3287 14 6 6.0119 -6.0697 0.4491 15 6 5.3292 -7.2769 0.3114 16 6 6.0117 -8.4707 0.4239 17 6 5.2716 -9.7749 0.2742 18 9 5.2806 -10.1646 -1.0694 19 9 5.8970 -10.7576 1.0489 20 9 3.9501 -9.6131 0.7040 21 6 7.3735 -8.4757 0.6737 22 6 8.0619 -7.2865 0.8118 23 6 7.3896 -6.0773 0.7009 24 7 8.0824 -4.8759 0.8394 25 7 5.9612 -3.6433 0.3363 26 6 5.3549 -2.4790 0.2313 27 1 -0.4850 0.8401 0.0004 28 1 2.1510 -3.5544 0.0006 29 1 3.3484 -5.7192 0.1926 30 1 4.2677 -7.2778 0.1125 31 1 7.9002 -9.4146 0.7607 32 1 9.1242 -7.2974 1.0062 33 1 9.0319 -4.8383 0.6444 34 1 7.6152 -4.0774 1.1309 35 1 5.9388 -1.5706 0.2409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243004652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:38 Heat of formation + Delta-G solvation = -123.928125 kcal Electronic energy + Delta-G solvation = -26102.591117 eV Core-core repulsion = 21650.890020 eV Total energy + Delta-G solvation = -4451.701098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.06158 -48.58644 -48.52810 -41.66145 -40.40582 -38.90248 -35.77103 -34.58826 -33.54707 -32.82978 -30.94240 -29.95522 -27.39251 -26.20583 -24.92817 -24.44568 -22.79335 -22.21229 -20.12855 -19.53012 -19.39137 -19.32170 -18.89555 -17.90032 -17.73363 -17.15252 -16.85579 -16.21267 -16.03397 -15.56062 -15.48585 -15.30157 -15.08392 -15.01262 -14.93270 -14.74133 -14.70344 -14.59368 -14.51339 -14.42739 -14.18570 -13.88243 -13.66719 -13.21956 -12.78356 -12.51789 -12.31783 -12.11813 -11.75443 -11.51482 -11.06929 -10.71635 -10.51871 -10.33396 -9.23508 -8.56109 -8.41010 -6.28368 -0.26500 0.23906 0.27515 0.80705 1.33685 1.37421 1.52311 1.79343 2.24975 2.47418 2.74417 2.82862 2.90318 3.08112 3.13505 3.18867 3.40747 3.55812 3.64553 3.92762 3.96405 4.09546 4.17412 4.39376 4.50890 4.59359 4.74226 4.93639 5.01012 5.19060 5.21216 5.29316 5.33832 5.48250 5.60839 5.78462 5.94907 6.69755 6.76201 6.89136 7.16713 7.42785 8.54427 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002913 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.136697 B = 9610.510396 C =10766.230524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.404 4.404 8 H 0.084 0.916 9 O -0.223 6.223 10 C 0.079 3.921 11 C -0.184 4.184 12 C -0.113 4.113 13 C 0.090 3.910 14 C -0.125 4.125 15 C -0.022 4.022 16 C -0.254 4.254 17 C 0.517 3.483 18 F -0.185 7.185 19 F -0.178 7.178 20 F -0.186 7.186 21 C -0.020 4.020 22 C -0.193 4.193 23 C 0.264 3.736 24 N -0.851 5.851 25 N -0.439 5.439 26 C 0.046 3.954 27 H 0.287 0.713 28 H 0.130 0.870 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.405 0.595 34 H 0.412 0.588 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.150 -15.588 1.860 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.481 4.481 8 H 0.102 0.898 9 O -0.128 6.128 10 C 0.026 3.974 11 C -0.211 4.211 12 C -0.133 4.133 13 C -0.046 4.046 14 C -0.130 4.130 15 C -0.042 4.042 16 C -0.257 4.257 17 C 0.463 3.537 18 F -0.166 7.166 19 F -0.160 7.160 20 F -0.167 7.167 21 C -0.039 4.039 22 C -0.215 4.215 23 C 0.152 3.848 24 N -0.396 5.396 25 N -0.149 5.149 26 C -0.114 4.114 27 H 0.097 0.903 28 H 0.147 0.853 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.235 0.765 34 H 0.251 0.749 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.885 -15.223 1.929 23.565 hybrid contribution -1.671 0.752 -0.252 1.850 sum 16.214 -14.471 1.677 21.797 Atomic orbital electron populations 1.69721 1.07059 1.29955 1.48691 1.25300 0.95839 1.02329 0.95007 0.85216 0.79075 0.77115 0.79407 1.19046 1.19495 1.17895 1.20718 0.77783 0.96351 1.53205 0.89809 1.83512 1.21457 1.26367 1.81470 1.20673 0.94316 0.85877 0.96487 1.21698 1.01328 0.92440 1.05605 1.21984 0.94511 0.98240 0.98543 1.19496 0.90234 0.91277 1.03544 1.17990 0.93239 0.90180 1.11618 1.20749 1.00033 0.89951 0.93490 1.19511 0.96325 0.90839 1.19044 1.18230 0.76885 0.85076 0.73484 1.93204 1.96369 1.92342 1.34717 1.93162 1.82234 1.65258 1.75309 1.93171 1.38102 1.95675 1.89798 1.20971 0.91257 0.99811 0.91886 1.20941 1.01914 0.89366 1.09284 1.18127 0.90009 0.88376 0.88269 1.43212 1.12472 1.09811 1.74085 1.67044 1.38104 0.97257 1.12538 1.22131 0.88639 0.96688 1.03987 0.90313 0.85276 0.83117 0.84601 0.82540 0.81994 0.76466 0.74922 0.80533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 13.96 21.61 0.30 -51.81 16 2 C 0.02 0.83 5.49 84.83 0.47 1.30 16 3 Si 0.97 42.40 28.62 68.60 1.96 44.36 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.40 -22.23 9.95 67.92 0.68 -21.55 16 8 H 0.08 4.82 5.48 -2.91 -0.02 4.80 16 9 O -0.22 -11.06 8.59 -22.31 -0.19 -11.25 16 10 C 0.08 3.38 6.67 22.73 0.15 3.53 16 11 C -0.18 -7.50 9.25 22.55 0.21 -7.29 16 12 C -0.11 -3.82 9.44 22.56 0.21 -3.60 16 13 C 0.09 2.89 6.71 41.95 0.28 3.17 16 14 C -0.12 -3.35 5.89 -19.93 -0.12 -3.47 16 15 C -0.02 -0.55 8.75 22.48 0.20 -0.35 16 16 C -0.25 -5.43 5.45 -19.88 -0.11 -5.54 16 17 C 0.52 11.09 3.36 71.24 0.24 11.33 16 18 F -0.18 -4.17 17.30 44.97 0.78 -3.39 16 19 F -0.18 -3.57 16.45 44.97 0.74 -2.83 16 20 F -0.19 -4.35 16.45 44.97 0.74 -3.61 16 21 C -0.02 -0.34 9.38 22.29 0.21 -0.13 16 22 C -0.19 -3.24 9.93 22.37 0.22 -3.02 16 23 C 0.26 5.89 6.76 38.52 0.26 6.15 16 24 N -0.85 -16.90 8.41 -50.92 -0.43 -17.32 16 25 N -0.44 -14.10 6.74 -184.38 -1.24 -15.34 16 26 C 0.05 1.63 11.14 84.88 0.95 2.57 16 27 H 0.29 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.13 5.64 5.75 -2.91 -0.02 5.62 16 29 H 0.15 4.21 6.23 -2.91 -0.02 4.19 16 30 H 0.14 3.16 5.76 -2.91 -0.02 3.15 16 31 H 0.16 1.87 7.59 -2.91 -0.02 1.84 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.40 5.51 8.91 -92.71 -0.83 4.68 16 34 H 0.41 9.57 5.88 -92.70 -0.54 9.03 16 35 H 0.18 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -61.10 316.03 6.35 -54.75 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.16 Total: 23.36 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 3.84 Total: -16.91 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.37 Total: -84.48 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.19 Total: -11.25 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 2.26 Total: -9.84 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.96 Total: 44.36 kcal Total: -61.10 6.35 -54.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243004652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.177 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds