Wall clock time and date at job start Tue Mar 31 2020 13:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 116.99454 * 2 1 4 4 C 1.38938 * 119.94066 * 90.00238 * 3 2 1 5 5 F 1.35093 * 119.97446 * 359.97438 * 4 3 2 6 6 C 1.38130 * 120.05372 * 179.97438 * 4 3 2 7 7 C 1.39423 * 119.94187 * 0.02562 * 6 4 3 8 8 C 1.48260 * 120.05452 * 179.97438 * 7 6 4 9 9 C 1.39305 * 120.13829 * 310.00394 * 8 7 6 10 10 C 1.37981 * 119.96969 * 180.02562 * 9 8 7 11 11 C 1.38673 * 120.24380 * 359.97438 * 10 9 8 12 12 F 1.35099 * 119.86140 * 180.02562 * 11 10 9 13 13 C 1.38335 * 120.27665 * 359.97438 * 11 10 9 14 14 C 1.38708 * 120.02827 * 0.02562 * 13 11 10 15 15 O 1.35660 * 120.12570 * 179.97438 * 14 13 11 16 16 C 1.34822 * 116.99681 * 354.39944 * 15 14 13 17 17 H 1.07996 * 119.99967 * 5.05953 * 16 15 14 18 18 C 1.38635 * 119.99719 * 185.06143 * 16 15 14 19 19 N 1.31569 * 120.00193 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46869 * 60.00303 * 20 18 16 22 22 H 1.48504 * 109.46964 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47066 * 300.00155 * 20 18 16 24 24 C 1.39419 * 119.88810 * 0.25156 * 7 6 4 25 25 C 1.38129 * 119.93836 * 359.49172 * 24 7 6 26 26 F 1.35101 * 119.96960 * 180.24756 * 25 24 7 27 27 H 1.09000 * 109.47275 * 299.99835 * 1 2 3 28 28 H 1.08999 * 109.47429 * 60.00178 * 1 2 3 29 29 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02822 * 179.97438 * 6 4 3 31 31 H 1.07999 * 120.01787 * 359.74270 * 9 8 7 32 32 H 1.08004 * 119.87581 * 179.97438 * 10 9 8 33 33 H 1.08002 * 119.98675 * 180.02562 * 13 11 10 34 34 H 0.96997 * 120.00069 * 180.02562 * 19 18 16 35 35 H 1.07999 * 120.02958 * 179.74579 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.3611 1.8297 1.2040 5 9 2.0533 1.2265 2.3729 6 6 2.9886 3.0602 1.2067 7 6 3.3055 3.6825 -0.0001 8 6 3.9784 5.0035 -0.0001 9 6 3.4737 6.0456 0.7744 10 6 4.1024 7.2738 0.7714 11 6 5.2369 7.4758 -0.0001 12 9 5.8467 8.6814 0.0032 13 6 5.7475 6.4478 -0.7721 14 6 5.1245 5.2085 -0.7776 15 8 5.6232 4.1991 -1.5345 16 6 6.6569 4.4967 -2.3472 17 1 7.1033 5.4795 -2.3153 18 6 7.1466 3.5409 -3.2240 19 7 6.6029 2.3434 -3.2626 20 14 8.5784 3.9534 -4.3507 21 1 9.7597 4.3287 -3.5328 22 1 8.9089 2.7699 -5.1847 23 1 8.2044 5.0896 -5.2307 24 6 2.9833 3.0629 -1.2068 25 6 2.3606 1.8299 -1.2040 26 9 2.0526 1.2268 -2.3730 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.2327 3.5403 2.1428 31 1 2.5879 5.8936 1.3734 32 1 3.7095 8.0808 1.3721 33 1 6.6315 6.6101 -1.3709 34 1 6.9458 1.6747 -3.8758 35 1 3.2240 3.5447 -2.1429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243223521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:55 Heat of formation + Delta-G solvation = -147.041462 kcal Electronic energy + Delta-G solvation = -26811.548335 eV Core-core repulsion = 22326.552217 eV Total energy + Delta-G solvation = -4484.996118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.79257 -48.60037 -48.45038 -39.75159 -38.94571 -37.31127 -36.31433 -32.55166 -31.52982 -30.14505 -29.50440 -28.35034 -26.55945 -25.61508 -23.13696 -22.85562 -21.84808 -20.97379 -18.46658 -18.17969 -17.71516 -17.31818 -17.14054 -16.21597 -15.71437 -15.41445 -15.29177 -15.15580 -15.08113 -15.03661 -14.78976 -14.51401 -14.40652 -14.36762 -13.76223 -13.51407 -13.45394 -12.84202 -12.64353 -12.44672 -11.95713 -11.91336 -11.71146 -11.55885 -11.27174 -11.10457 -10.87840 -10.83508 -10.59352 -10.01387 -9.79067 -9.05739 -8.76772 -8.48642 -8.10082 -7.45772 -6.67186 -4.27265 0.89303 1.26934 1.78237 1.97901 3.03250 3.03924 3.07605 3.39242 3.69889 3.78712 4.06020 4.17067 4.67702 4.70327 4.81197 4.88515 4.98541 5.03020 5.23850 5.29916 5.37343 5.44384 5.49606 5.58143 5.74437 5.83539 5.90650 6.04182 6.25102 6.29106 6.51952 6.57745 6.69181 6.71338 6.86558 6.89100 7.11296 7.44285 7.46778 7.73958 8.75695 9.35353 10.47557 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.005149 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.993963 B = 5436.197103 C = 7674.002311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.008 3.992 4 C 0.107 3.893 5 F -0.131 7.131 6 C -0.152 4.152 7 C 0.048 3.952 8 C -0.156 4.156 9 C -0.024 4.024 10 C -0.251 4.251 11 C 0.153 3.847 12 F -0.149 7.149 13 C -0.269 4.269 14 C 0.188 3.812 15 O -0.149 6.149 16 C -0.400 4.400 17 H 0.096 0.904 18 C 0.047 3.953 19 N -0.844 5.844 20 Si 0.942 3.058 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.114 4.114 25 C 0.120 3.880 26 F -0.125 7.125 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.276 0.724 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 1.785 5.765 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.236 6.236 3 C -0.037 4.037 4 C 0.087 3.913 5 F -0.109 7.109 6 C -0.171 4.171 7 C 0.048 3.952 8 C -0.158 4.158 9 C -0.042 4.042 10 C -0.271 4.271 11 C 0.133 3.867 12 F -0.128 7.128 13 C -0.289 4.289 14 C 0.131 3.869 15 O -0.050 6.050 16 C -0.476 4.476 17 H 0.113 0.887 18 C -0.160 4.160 19 N -0.475 5.475 20 Si 0.766 3.234 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.133 4.133 25 C 0.100 3.900 26 F -0.103 7.103 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.086 0.914 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.980 1.086 5.579 10.627 hybrid contribution 0.737 0.358 -0.594 1.012 sum -8.242 1.444 4.985 9.741 Atomic orbital electron populations 1.23072 0.79214 1.03355 1.00686 1.86151 1.19915 1.23404 1.94144 1.18491 1.05183 0.89434 0.90615 1.17465 1.01442 0.92166 0.80246 1.91478 1.91113 1.83083 1.45261 1.21140 1.02396 0.93956 0.99633 1.18116 0.93181 0.93091 0.90837 1.17627 0.98045 0.93503 1.06628 1.20533 0.97644 0.90872 0.95159 1.20461 0.99539 0.99257 1.07796 1.17558 0.92200 0.79946 0.96981 1.91432 1.82657 1.43364 1.95312 1.20990 1.06234 0.93431 1.08279 1.18895 0.90526 0.87071 0.90416 1.83990 1.44355 1.30435 1.46204 1.21376 1.08954 1.00710 1.16519 0.88667 1.25343 0.98907 0.94670 0.97125 1.70023 1.39276 1.03301 1.34926 0.85749 0.79778 0.78479 0.79368 1.19257 1.20045 1.19244 1.21315 0.98063 0.93442 1.00471 1.17562 1.00273 0.91780 0.80374 1.91508 1.90779 1.82850 1.45204 0.93480 0.93370 0.88619 0.83772 0.85480 0.85889 0.83948 0.91405 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.13 101.05 1.12 1.49 16 2 O -0.32 -5.32 10.13 -19.73 -0.20 -5.52 16 3 C 0.01 0.15 5.74 -39.06 -0.22 -0.08 16 4 C 0.11 1.75 7.30 -39.36 -0.29 1.46 16 5 F -0.13 -2.06 17.10 2.25 0.04 -2.02 16 6 C -0.15 -2.41 9.48 -39.18 -0.37 -2.78 16 7 C 0.05 0.86 5.27 -104.90 -0.55 0.31 16 8 C -0.16 -2.88 5.48 -104.72 -0.57 -3.46 16 9 C -0.02 -0.37 9.50 -39.28 -0.37 -0.74 16 10 C -0.25 -3.94 10.01 -39.52 -0.40 -4.33 16 11 C 0.15 2.74 7.29 -39.38 -0.29 2.45 16 12 F -0.15 -2.60 17.26 2.25 0.04 -2.56 16 13 C -0.27 -5.43 9.14 -39.37 -0.36 -5.79 16 14 C 0.19 4.05 6.56 -38.75 -0.25 3.79 16 15 O -0.15 -3.77 8.12 0.35 0.00 -3.76 16 16 C -0.40 -10.18 9.49 30.88 0.29 -9.89 16 17 H 0.10 2.25 5.21 -52.49 -0.27 1.97 16 18 C 0.05 1.19 5.49 -17.52 -0.10 1.10 16 19 N -0.84 -22.94 13.67 55.48 0.76 -22.18 16 20 Si 0.94 19.24 29.55 -169.99 -5.02 14.22 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.11 -2.18 8.76 -39.18 -0.34 -2.52 16 25 C 0.12 2.24 7.30 -39.36 -0.29 1.95 16 26 F -0.13 -2.40 17.10 2.25 0.04 -2.36 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.14 1.93 8.04 -52.49 -0.42 1.51 16 31 H 0.13 1.54 8.04 -52.49 -0.42 1.11 16 32 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.14 2.90 5.64 -52.49 -0.30 2.60 16 34 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.15 3.09 7.70 -52.49 -0.40 2.68 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -27.85 327.62 -5.04 -32.89 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -2.64 Total: 3.40 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -2.99 Total: -17.03 kcal Atomic # 7 Polarization: -22.94 SS G_CDS: 0.76 Total: -22.18 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.20 Total: -9.29 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.12 Total: -6.94 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.85 -5.04 -32.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243223521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.155 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds