Wall clock time and date at job start Tue Mar 31 2020 13:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 116.99454 * 2 1 4 4 C 1.38938 * 119.94066 * 90.00238 * 3 2 1 5 5 F 1.35093 * 119.97446 * 359.97438 * 4 3 2 6 6 C 1.38130 * 120.05372 * 179.97438 * 4 3 2 7 7 C 1.39423 * 119.94187 * 0.02562 * 6 4 3 8 8 C 1.48260 * 120.05452 * 179.97438 * 7 6 4 9 9 C 1.39305 * 120.13829 * 310.00394 * 8 7 6 10 10 C 1.37981 * 119.96969 * 180.02562 * 9 8 7 11 11 C 1.38673 * 120.24380 * 359.97438 * 10 9 8 12 12 F 1.35099 * 119.86140 * 180.02562 * 11 10 9 13 13 C 1.38335 * 120.27665 * 359.97438 * 11 10 9 14 14 C 1.38708 * 120.02827 * 0.02562 * 13 11 10 15 15 O 1.35660 * 120.12570 * 179.97438 * 14 13 11 16 16 C 1.34822 * 116.99681 * 354.39944 * 15 14 13 17 17 H 1.07996 * 119.99967 * 5.05953 * 16 15 14 18 18 C 1.38635 * 119.99719 * 185.06143 * 16 15 14 19 19 N 1.31569 * 120.00193 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46869 * 60.00303 * 20 18 16 22 22 H 1.48504 * 109.46964 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47066 * 300.00155 * 20 18 16 24 24 C 1.39419 * 119.88810 * 0.25156 * 7 6 4 25 25 C 1.38129 * 119.93836 * 359.49172 * 24 7 6 26 26 F 1.35101 * 119.96960 * 180.24756 * 25 24 7 27 27 H 1.09000 * 109.47275 * 299.99835 * 1 2 3 28 28 H 1.08999 * 109.47429 * 60.00178 * 1 2 3 29 29 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02822 * 179.97438 * 6 4 3 31 31 H 1.07999 * 120.01787 * 359.74270 * 9 8 7 32 32 H 1.08004 * 119.87581 * 179.97438 * 10 9 8 33 33 H 1.08002 * 119.98675 * 180.02562 * 13 11 10 34 34 H 0.96997 * 120.00069 * 180.02562 * 19 18 16 35 35 H 1.07999 * 120.02958 * 179.74579 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.3611 1.8297 1.2040 5 9 2.0533 1.2265 2.3729 6 6 2.9886 3.0602 1.2067 7 6 3.3055 3.6825 -0.0001 8 6 3.9784 5.0035 -0.0001 9 6 3.4737 6.0456 0.7744 10 6 4.1024 7.2738 0.7714 11 6 5.2369 7.4758 -0.0001 12 9 5.8467 8.6814 0.0032 13 6 5.7475 6.4478 -0.7721 14 6 5.1245 5.2085 -0.7776 15 8 5.6232 4.1991 -1.5345 16 6 6.6569 4.4967 -2.3472 17 1 7.1033 5.4795 -2.3153 18 6 7.1466 3.5409 -3.2240 19 7 6.6029 2.3434 -3.2626 20 14 8.5784 3.9534 -4.3507 21 1 9.7597 4.3287 -3.5328 22 1 8.9089 2.7699 -5.1847 23 1 8.2044 5.0896 -5.2307 24 6 2.9833 3.0629 -1.2068 25 6 2.3606 1.8299 -1.2040 26 9 2.0526 1.2268 -2.3730 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.2327 3.5403 2.1428 31 1 2.5879 5.8936 1.3734 32 1 3.7095 8.0808 1.3721 33 1 6.6315 6.6101 -1.3709 34 1 6.9458 1.6747 -3.8758 35 1 3.2240 3.5447 -2.1429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243223521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:54 Heat of formation + Delta-G solvation = -161.323911 kcal Electronic energy + Delta-G solvation = -26812.167669 eV Core-core repulsion = 22326.552217 eV Total energy + Delta-G solvation = -4485.615452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.09391 -50.05717 -49.87256 -41.23266 -40.33296 -38.73093 -37.78664 -34.35653 -32.94450 -31.53694 -30.97134 -29.67926 -27.76297 -27.34634 -24.51936 -24.27811 -23.34703 -22.40020 -20.12985 -19.60308 -19.13965 -18.67318 -18.57581 -17.52616 -17.20745 -16.98996 -16.71592 -16.58654 -16.51241 -16.40587 -16.07090 -15.98754 -15.83869 -15.54718 -15.41604 -15.11264 -14.88001 -14.19382 -14.02119 -13.89851 -13.52808 -13.21155 -13.03310 -12.95940 -12.79699 -12.47663 -12.31732 -12.27851 -12.14687 -11.52750 -11.20850 -10.83757 -10.16543 -9.87072 -9.55694 -8.97717 -8.50983 -6.19418 -0.48493 -0.11366 0.33933 0.53349 1.35068 1.43697 1.49555 2.06606 2.13381 2.37864 2.63279 2.78508 3.03693 3.20794 3.34764 3.36801 3.52482 3.71347 3.98747 4.06107 4.21850 4.32004 4.35055 4.36160 4.41505 4.51546 4.65019 4.68119 4.86086 4.92074 5.01585 5.16316 5.19756 5.25577 5.32937 5.49076 5.54761 5.92445 6.01258 6.21458 6.92382 7.63247 8.67982 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.005149 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.993963 B = 5436.197103 C = 7674.002311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.341 6.341 3 C 0.016 3.984 4 C 0.109 3.891 5 F -0.122 7.122 6 C -0.130 4.130 7 C 0.035 3.965 8 C -0.154 4.154 9 C -0.010 4.010 10 C -0.220 4.220 11 C 0.145 3.855 12 F -0.145 7.145 13 C -0.285 4.285 14 C 0.162 3.838 15 O -0.195 6.195 16 C -0.419 4.419 17 H 0.101 0.899 18 C -0.008 4.008 19 N -0.901 5.901 20 Si 1.009 2.991 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.124 4.124 25 C 0.099 3.901 26 F -0.136 7.136 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.180 0.820 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.129 0.871 34 H 0.273 0.727 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 3.429 8.504 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.258 6.258 3 C -0.030 4.030 4 C 0.089 3.911 5 F -0.101 7.101 6 C -0.148 4.148 7 C 0.035 3.965 8 C -0.155 4.155 9 C -0.027 4.027 10 C -0.239 4.239 11 C 0.125 3.875 12 F -0.124 7.124 13 C -0.305 4.305 14 C 0.109 3.891 15 O -0.099 6.099 16 C -0.494 4.494 17 H 0.119 0.881 18 C -0.209 4.209 19 N -0.537 5.537 20 Si 0.829 3.171 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.183 1.183 24 C -0.143 4.143 25 C 0.079 3.921 26 F -0.115 7.115 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.197 0.803 31 H 0.194 0.806 32 H 0.183 0.817 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.509 2.784 8.356 13.711 hybrid contribution 0.939 0.017 -1.177 1.506 sum -9.569 2.801 7.179 12.286 Atomic orbital electron populations 1.23378 0.76504 1.05502 1.01555 1.86098 1.22520 1.23005 1.94216 1.18576 1.04603 0.89355 0.90487 1.17413 1.01360 0.92298 0.80048 1.91503 1.91011 1.82989 1.44583 1.21354 1.00246 0.93319 0.99901 1.18139 0.93909 0.93385 0.91095 1.17973 0.96827 0.94750 1.05993 1.21070 0.98335 0.89342 0.93994 1.21002 0.97195 1.00262 1.05417 1.17702 0.93053 0.79521 0.97176 1.91445 1.82786 1.42881 1.95275 1.21020 1.06292 0.94040 1.09160 1.19449 0.91831 0.87229 0.90630 1.83989 1.45566 1.32061 1.48252 1.21729 1.09476 1.01101 1.17117 0.88138 1.26408 1.01528 0.94418 0.98514 1.70164 1.41882 1.04646 1.36978 0.84771 0.76572 0.78340 0.77412 1.18319 1.19832 1.18312 1.21184 0.98914 0.93987 1.00242 1.17691 1.01588 0.92094 0.80716 1.91467 1.91028 1.83032 1.45930 0.91969 0.93120 0.85954 0.80299 0.80625 0.81682 0.85351 0.91755 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.13 113.37 1.26 1.79 16 2 O -0.34 -11.04 10.13 -93.52 -0.95 -11.99 16 3 C 0.02 0.53 5.74 22.61 0.13 0.66 16 4 C 0.11 3.32 7.30 22.41 0.16 3.48 16 5 F -0.12 -3.47 17.10 44.97 0.77 -2.71 16 6 C -0.13 -3.73 9.48 22.53 0.21 -3.51 16 7 C 0.04 1.23 5.27 -20.04 -0.11 1.12 16 8 C -0.15 -5.44 5.48 -19.93 -0.11 -5.55 16 9 C -0.01 -0.25 9.50 22.47 0.21 -0.04 16 10 C -0.22 -5.79 10.01 22.31 0.22 -5.56 16 11 C 0.14 4.85 7.29 22.40 0.16 5.02 16 12 F -0.15 -4.72 17.26 44.97 0.78 -3.94 16 13 C -0.28 -11.56 9.14 22.41 0.20 -11.36 16 14 C 0.16 7.12 6.56 22.81 0.15 7.27 16 15 O -0.19 -10.42 8.12 -21.67 -0.18 -10.60 16 16 C -0.42 -22.59 9.49 67.91 0.64 -21.94 16 17 H 0.10 5.04 5.21 -2.91 -0.02 5.02 16 18 C -0.01 -0.44 5.49 84.83 0.47 0.02 16 19 N -0.90 -52.42 13.67 21.61 0.30 -52.13 16 20 Si 1.01 41.23 29.55 68.60 2.03 43.25 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 C -0.12 -4.94 8.76 22.53 0.20 -4.74 16 25 C 0.10 3.81 7.30 22.41 0.16 3.97 16 26 F -0.14 -5.50 17.10 44.97 0.77 -4.74 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.18 3.86 8.04 -2.91 -0.02 3.84 16 31 H 0.18 2.97 8.04 -2.91 -0.02 2.95 16 32 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.13 5.46 5.64 -2.91 -0.02 5.45 16 34 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.12 5.53 7.70 -2.91 -0.02 5.51 16 Total: -1.00 -65.59 327.62 8.66 -56.93 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.17 Total: 15.31 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.98 Total: -29.38 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.30 Total: -52.13 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -1.12 Total: -22.59 kcal Atomic # 9 Polarization: -13.70 SS G_CDS: 2.31 Total: -11.39 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -65.59 8.66 -56.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243223521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.395 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds