Wall clock time and date at job start Tue Mar 31 2020 14:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99969 * 2 1 4 4 C 1.38671 * 120.11841 * 270.02154 * 3 2 1 5 5 F 1.35103 * 119.99154 * 359.95815 * 4 3 2 6 6 C 1.38579 * 120.01594 * 179.97438 * 4 3 2 7 7 F 1.35098 * 119.87990 * 180.02562 * 6 4 3 8 8 C 1.38602 * 120.23813 * 359.97438 * 6 4 3 9 9 C 1.37967 * 120.23163 * 359.76811 * 8 6 4 10 10 C 1.39392 * 119.97972 * 0.50382 * 9 8 6 11 11 C 1.48233 * 120.11625 * 179.74404 * 10 9 8 12 12 C 1.39314 * 120.13587 * 64.72877 * 11 10 9 13 13 C 1.37987 * 119.96453 * 180.23247 * 12 11 10 14 14 C 1.38665 * 120.24593 * 359.46814 * 13 12 11 15 15 F 1.35096 * 119.86362 * 180.27602 * 14 13 12 16 16 C 1.38348 * 120.27740 * 0.55605 * 14 13 12 17 17 C 1.38697 * 120.02684 * 359.70296 * 16 14 13 18 18 O 1.35673 * 120.12029 * 180.02562 * 17 16 14 19 19 C 1.34808 * 117.00053 * 354.39905 * 18 17 16 20 20 H 1.08007 * 120.00221 * 5.07181 * 19 18 17 21 21 C 1.38635 * 119.99948 * 185.07852 * 19 18 17 22 22 N 1.31570 * 119.99792 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00153 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46832 * 90.00550 * 23 21 19 25 25 H 1.48504 * 109.47174 * 210.00456 * 23 21 19 26 26 H 1.48499 * 109.47103 * 330.00441 * 23 21 19 27 27 H 1.09006 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47058 * 299.99482 * 1 2 3 29 29 H 1.09000 * 109.47238 * 59.99886 * 1 2 3 30 30 H 1.08004 * 119.88427 * 180.02562 * 8 6 4 31 31 H 1.07999 * 120.00717 * 180.27968 * 9 8 6 32 32 H 1.08001 * 120.02019 * 359.95251 * 12 11 10 33 33 H 1.08001 * 119.87218 * 179.74891 * 13 12 11 34 34 H 1.07999 * 119.98522 * 179.72267 * 16 14 13 35 35 H 0.97007 * 119.99751 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3615 1.8311 -1.1995 5 9 2.0563 1.2311 -2.3708 6 6 2.9902 3.0661 -1.1970 7 9 3.2958 3.6681 -2.3672 8 6 3.3055 3.6864 0.0017 9 6 2.9915 3.0808 1.2009 10 6 2.3642 1.8360 1.2094 11 6 2.0306 1.1801 2.4961 12 6 1.1005 1.7598 3.3562 13 6 0.7961 1.1486 4.5553 14 6 1.4045 -0.0477 4.9038 15 9 1.0966 -0.6422 6.0771 16 6 2.3299 -0.6320 4.0575 17 6 2.6484 -0.0249 2.8519 18 8 3.5553 -0.5965 2.0203 19 6 4.1966 -1.6920 2.4742 20 1 3.9210 -2.1240 3.4250 21 6 5.2099 -2.2640 1.7207 22 7 5.8355 -3.3335 2.1635 23 14 5.6863 -1.5173 0.0760 24 1 6.7512 -0.5032 0.2827 25 1 6.1880 -2.5852 -0.8258 26 1 4.4983 -0.8700 -0.5363 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.7951 4.6491 -0.0031 31 1 3.2348 3.5695 2.1328 32 1 0.6213 2.6894 3.0867 33 1 0.0779 1.6014 5.2228 34 1 2.8043 -1.5616 4.3357 35 1 6.5443 -3.7339 1.6360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243302779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:12 Heat of formation + Delta-G solvation = -139.726852 kcal Electronic energy + Delta-G solvation = -27661.221317 eV Core-core repulsion = 23176.542384 eV Total energy + Delta-G solvation = -4484.678933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.35479 -48.44390 -48.41965 -40.10424 -38.80524 -37.12102 -36.51457 -32.57166 -31.83514 -30.24503 -29.67011 -28.17935 -26.71941 -25.45553 -23.36981 -22.74113 -21.79709 -21.14579 -18.36870 -18.23223 -17.89015 -17.48137 -17.18561 -16.39815 -15.93958 -15.69471 -15.39684 -15.35898 -15.15203 -15.08406 -14.66609 -14.42931 -14.22016 -14.11622 -13.88382 -13.68860 -13.37720 -13.10711 -12.75865 -12.40764 -12.21860 -12.07299 -11.75847 -11.45606 -11.37218 -11.12091 -10.87640 -10.81633 -10.33120 -9.92296 -9.66432 -9.01446 -8.74757 -8.69894 -8.19789 -7.58187 -6.56970 -4.23056 0.84742 0.96521 1.66524 1.93956 3.17199 3.21072 3.23791 3.40862 3.56909 4.06144 4.10870 4.15934 4.40113 4.50714 4.65542 4.78435 4.86084 4.95892 5.04769 5.33004 5.35435 5.42883 5.46596 5.56138 5.71763 5.75124 5.86953 5.91102 6.00115 6.14883 6.29316 6.49547 6.59386 6.70338 6.74456 6.87778 7.34703 7.55470 7.59760 7.83784 8.76950 9.34443 10.48982 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.006829 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.780648 B = 4099.082295 C = 5822.062300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.305 6.305 3 C 0.113 3.887 4 C 0.044 3.956 5 F -0.125 7.125 6 C 0.066 3.934 7 F -0.131 7.131 8 C -0.133 4.133 9 C -0.080 4.080 10 C -0.009 4.009 11 C -0.152 4.152 12 C -0.030 4.030 13 C -0.247 4.247 14 C 0.151 3.849 15 F -0.148 7.148 16 C -0.261 4.261 17 C 0.208 3.792 18 O -0.181 6.181 19 C -0.392 4.392 20 H 0.110 0.890 21 C 0.074 3.926 22 N -0.866 5.866 23 Si 0.893 3.107 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.249 1.249 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.148 0.852 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 12.597 -2.090 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.221 6.221 3 C 0.067 3.933 4 C 0.023 3.977 5 F -0.103 7.103 6 C 0.046 3.954 7 F -0.110 7.110 8 C -0.152 4.152 9 C -0.098 4.098 10 C -0.010 4.010 11 C -0.154 4.154 12 C -0.048 4.048 13 C -0.266 4.266 14 C 0.132 3.868 15 F -0.126 7.126 16 C -0.281 4.281 17 C 0.152 3.848 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.127 0.873 21 C -0.132 4.132 22 N -0.502 5.502 23 Si 0.718 3.282 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.173 1.173 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.523 12.227 -2.436 15.102 hybrid contribution 0.221 -0.056 -0.839 0.869 sum -8.302 12.171 -3.274 15.092 Atomic orbital electron populations 1.23035 0.78707 1.03702 1.00377 1.86215 1.19675 1.22350 1.93815 1.18509 0.98166 0.86956 0.89659 1.17995 1.05191 0.92313 0.82178 1.91498 1.91194 1.82904 1.44728 1.17519 1.03418 0.91851 0.82618 1.91503 1.91222 1.82594 1.45650 1.20971 1.02521 1.01673 0.90018 1.21121 0.96714 0.94006 0.98001 1.18832 0.97441 0.93053 0.91664 1.17488 1.05777 0.96409 0.95698 1.20471 0.94467 0.97962 0.91882 1.20465 1.08032 0.97913 1.00225 1.17551 0.95780 0.92048 0.81424 1.91440 1.91898 1.83599 1.45682 1.21109 1.04897 1.05308 0.96796 1.18596 0.88891 0.89497 0.87782 1.83628 1.45804 1.40191 1.38657 1.20818 1.15864 1.02372 1.07591 0.87316 1.24436 0.94493 0.95089 0.99200 1.69645 1.22527 1.19260 1.38752 0.86327 0.80269 0.79304 0.82313 1.19676 1.20481 1.17280 0.88460 0.92996 0.93900 0.83500 0.83558 0.85602 0.85859 0.83488 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.13 101.05 1.12 1.63 16 2 O -0.30 -5.84 9.27 -19.44 -0.18 -6.02 16 3 C 0.11 2.04 5.42 -38.83 -0.21 1.83 16 4 C 0.04 0.76 7.31 -39.30 -0.29 0.48 16 5 F -0.12 -2.26 17.02 2.25 0.04 -2.22 16 6 C 0.07 1.00 7.30 -39.32 -0.29 0.72 16 7 F -0.13 -1.97 17.17 2.25 0.04 -1.93 16 8 C -0.13 -1.67 10.01 -39.55 -0.40 -2.07 16 9 C -0.08 -1.07 9.73 -39.25 -0.38 -1.45 16 10 C -0.01 -0.15 4.95 -104.77 -0.52 -0.67 16 11 C -0.15 -2.67 4.95 -104.73 -0.52 -3.19 16 12 C -0.03 -0.43 9.72 -39.27 -0.38 -0.81 16 13 C -0.25 -3.73 10.01 -39.52 -0.40 -4.12 16 14 C 0.15 2.71 7.29 -39.38 -0.29 2.43 16 15 F -0.15 -2.62 17.26 2.25 0.04 -2.58 16 16 C -0.26 -5.37 9.14 -39.37 -0.36 -5.73 16 17 C 0.21 4.44 6.34 -38.75 -0.25 4.19 16 18 O -0.18 -4.49 7.58 0.35 0.00 -4.49 16 19 C -0.39 -10.55 9.94 30.88 0.31 -10.25 16 20 H 0.11 2.99 5.44 -52.48 -0.29 2.71 16 21 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16 22 N -0.87 -24.34 13.96 55.48 0.77 -23.57 16 23 Si 0.89 21.63 28.62 -169.99 -4.86 16.76 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.25 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.15 3.24 5.64 -52.49 -0.30 2.94 16 35 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -29.43 326.97 -4.83 -34.26 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.68 Total: -0.05 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.93 Total: -15.10 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.77 Total: -23.57 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.18 Total: -10.50 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.12 Total: -6.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.43 -4.83 -34.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243302779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.466 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds