Wall clock time and date at job start Tue Mar 31 2020 14:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99969 * 2 1 4 4 C 1.38671 * 120.11841 * 270.02154 * 3 2 1 5 5 F 1.35103 * 119.99154 * 359.95815 * 4 3 2 6 6 C 1.38579 * 120.01594 * 179.97438 * 4 3 2 7 7 F 1.35098 * 119.87990 * 180.02562 * 6 4 3 8 8 C 1.38602 * 120.23813 * 359.97438 * 6 4 3 9 9 C 1.37967 * 120.23163 * 359.76811 * 8 6 4 10 10 C 1.39392 * 119.97972 * 0.50382 * 9 8 6 11 11 C 1.48233 * 120.11625 * 179.74404 * 10 9 8 12 12 C 1.39314 * 120.13587 * 64.72877 * 11 10 9 13 13 C 1.37987 * 119.96453 * 180.23247 * 12 11 10 14 14 C 1.38665 * 120.24593 * 359.46814 * 13 12 11 15 15 F 1.35096 * 119.86362 * 180.27602 * 14 13 12 16 16 C 1.38348 * 120.27740 * 0.55605 * 14 13 12 17 17 C 1.38697 * 120.02684 * 359.70296 * 16 14 13 18 18 O 1.35673 * 120.12029 * 180.02562 * 17 16 14 19 19 C 1.34808 * 117.00053 * 354.39905 * 18 17 16 20 20 H 1.08007 * 120.00221 * 5.07181 * 19 18 17 21 21 C 1.38635 * 119.99948 * 185.07852 * 19 18 17 22 22 N 1.31570 * 119.99792 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00153 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46832 * 90.00550 * 23 21 19 25 25 H 1.48504 * 109.47174 * 210.00456 * 23 21 19 26 26 H 1.48499 * 109.47103 * 330.00441 * 23 21 19 27 27 H 1.09006 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47058 * 299.99482 * 1 2 3 29 29 H 1.09000 * 109.47238 * 59.99886 * 1 2 3 30 30 H 1.08004 * 119.88427 * 180.02562 * 8 6 4 31 31 H 1.07999 * 120.00717 * 180.27968 * 9 8 6 32 32 H 1.08001 * 120.02019 * 359.95251 * 12 11 10 33 33 H 1.08001 * 119.87218 * 179.74891 * 13 12 11 34 34 H 1.07999 * 119.98522 * 179.72267 * 16 14 13 35 35 H 0.97007 * 119.99751 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3615 1.8311 -1.1995 5 9 2.0563 1.2311 -2.3708 6 6 2.9902 3.0661 -1.1970 7 9 3.2958 3.6681 -2.3672 8 6 3.3055 3.6864 0.0017 9 6 2.9915 3.0808 1.2009 10 6 2.3642 1.8360 1.2094 11 6 2.0306 1.1801 2.4961 12 6 1.1005 1.7598 3.3562 13 6 0.7961 1.1486 4.5553 14 6 1.4045 -0.0477 4.9038 15 9 1.0966 -0.6422 6.0771 16 6 2.3299 -0.6320 4.0575 17 6 2.6484 -0.0249 2.8519 18 8 3.5553 -0.5965 2.0203 19 6 4.1966 -1.6920 2.4742 20 1 3.9210 -2.1240 3.4250 21 6 5.2099 -2.2640 1.7207 22 7 5.8355 -3.3335 2.1635 23 14 5.6863 -1.5173 0.0760 24 1 6.7512 -0.5032 0.2827 25 1 6.1880 -2.5852 -0.8258 26 1 4.4983 -0.8700 -0.5363 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.7951 4.6491 -0.0031 31 1 3.2348 3.5695 2.1328 32 1 0.6213 2.6894 3.0867 33 1 0.0779 1.6014 5.2228 34 1 2.8043 -1.5616 4.3357 35 1 6.5443 -3.7339 1.6360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243302779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:11 Heat of formation + Delta-G solvation = -156.056454 kcal Electronic energy + Delta-G solvation = -27661.929421 eV Core-core repulsion = 23176.542384 eV Total energy + Delta-G solvation = -4485.387038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.57685 -49.88351 -49.65614 -41.46906 -40.26562 -38.41468 -37.95859 -34.51914 -33.16531 -31.40553 -31.12625 -29.51425 -27.90716 -27.27475 -24.65446 -23.93928 -23.30413 -22.50426 -20.06408 -19.65269 -19.34301 -18.70899 -18.47672 -17.64754 -17.31859 -17.17625 -16.92156 -16.62154 -16.60800 -16.30360 -15.93125 -15.88961 -15.64981 -15.49075 -15.39202 -15.16672 -14.97161 -14.31293 -14.23302 -14.00295 -13.66664 -13.22382 -13.05686 -12.90198 -12.81492 -12.52378 -12.31213 -12.28557 -12.13745 -11.58899 -11.14121 -10.96344 -10.01238 -9.87232 -9.60063 -9.07947 -8.56980 -6.27127 -0.35793 -0.18243 0.26703 0.51172 1.25132 1.26818 1.47508 2.10887 2.21360 2.37915 2.60065 2.88157 2.93698 2.99487 3.25617 3.33517 3.48722 3.73234 3.94269 3.99428 4.20751 4.28164 4.31095 4.39222 4.41367 4.57019 4.67043 4.75394 4.80965 4.94841 5.14242 5.15319 5.25566 5.27504 5.36951 5.55011 5.65561 5.80406 6.07111 6.36213 6.78481 7.50729 8.54333 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.006829 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.780648 B = 4099.082295 C = 5822.062300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.343 6.343 3 C 0.097 3.903 4 C 0.012 3.988 5 F -0.139 7.139 6 C 0.066 3.934 7 F -0.132 7.132 8 C -0.114 4.114 9 C -0.062 4.062 10 C -0.034 4.034 11 C -0.135 4.135 12 C -0.013 4.013 13 C -0.210 4.210 14 C 0.139 3.861 15 F -0.148 7.148 16 C -0.283 4.283 17 C 0.182 3.818 18 O -0.211 6.211 19 C -0.394 4.394 20 H 0.084 0.916 21 C 0.026 3.974 22 N -0.915 5.915 23 Si 0.949 3.051 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.266 1.266 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.192 0.808 31 H 0.184 0.816 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.115 0.885 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 17.135 -1.573 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.260 6.260 3 C 0.051 3.949 4 C -0.008 4.008 5 F -0.118 7.118 6 C 0.046 3.954 7 F -0.110 7.110 8 C -0.132 4.132 9 C -0.080 4.080 10 C -0.035 4.035 11 C -0.137 4.137 12 C -0.030 4.030 13 C -0.229 4.229 14 C 0.120 3.880 15 F -0.127 7.127 16 C -0.303 4.303 17 C 0.130 3.870 18 O -0.116 6.116 19 C -0.470 4.470 20 H 0.102 0.898 21 C -0.174 4.174 22 N -0.555 5.555 23 Si 0.772 3.228 24 H -0.186 1.186 25 H -0.197 1.197 26 H -0.191 1.191 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.209 0.791 31 H 0.201 0.799 32 H 0.198 0.802 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.208 16.802 -1.894 19.751 hybrid contribution 0.403 -1.202 -0.825 1.513 sum -9.805 15.600 -2.719 18.625 Atomic orbital electron populations 1.23226 0.76773 1.04587 1.01628 1.86151 1.21946 1.23792 1.94107 1.18758 0.98830 0.86736 0.90530 1.18301 1.07151 0.93634 0.81726 1.91447 1.91571 1.83406 1.45382 1.17788 1.02851 0.91155 0.83593 1.91504 1.91130 1.82381 1.45997 1.21423 1.00794 1.02709 0.88311 1.21526 0.94325 0.92285 0.99841 1.18967 0.99477 0.94615 0.90456 1.17838 1.04791 0.94628 0.96433 1.21075 0.92470 0.99118 0.90374 1.21023 1.06061 0.95396 1.00408 1.17732 0.95888 0.93213 0.81199 1.91441 1.91797 1.83892 1.45552 1.21059 1.06392 1.04905 0.97957 1.19164 0.88881 0.91012 0.87955 1.83607 1.48022 1.40218 1.39757 1.20680 1.16182 1.03386 1.06763 0.89849 1.25030 0.94885 0.95660 1.01824 1.69716 1.24308 1.21150 1.40322 0.85507 0.79299 0.78791 0.79185 1.18555 1.19657 1.19054 0.87903 0.91726 0.92526 0.79132 0.79866 0.80239 0.81549 0.86668 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.13 113.37 1.26 2.12 16 2 O -0.34 -13.28 9.27 -92.49 -0.86 -14.13 16 3 C 0.10 3.40 5.42 22.75 0.12 3.53 16 4 C 0.01 0.42 7.31 22.45 0.16 0.58 16 5 F -0.14 -5.11 17.02 44.97 0.77 -4.35 16 6 C 0.07 1.83 7.30 22.44 0.16 2.00 16 7 F -0.13 -3.63 17.17 44.97 0.77 -2.86 16 8 C -0.11 -2.30 10.01 22.29 0.22 -2.08 16 9 C -0.06 -1.34 9.73 22.48 0.22 -1.12 16 10 C -0.03 -1.04 4.95 -19.96 -0.10 -1.14 16 11 C -0.14 -4.37 4.95 -19.93 -0.10 -4.47 16 12 C -0.01 -0.30 9.72 22.47 0.22 -0.08 16 13 C -0.21 -5.23 10.01 22.31 0.22 -5.00 16 14 C 0.14 4.73 7.29 22.40 0.16 4.89 16 15 F -0.15 -5.06 17.26 44.97 0.78 -4.28 16 16 C -0.28 -11.96 9.14 22.41 0.20 -11.75 16 17 C 0.18 7.79 6.34 22.81 0.14 7.94 16 18 O -0.21 -10.88 7.58 -21.66 -0.16 -11.05 16 19 C -0.39 -22.65 9.94 67.91 0.68 -21.97 16 20 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 21 C 0.03 1.50 5.49 84.83 0.47 1.96 16 22 N -0.92 -54.51 13.96 21.61 0.30 -54.20 16 23 Si 0.95 46.60 28.62 68.60 1.96 48.57 16 24 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.27 -13.64 7.11 99.48 0.71 -12.93 16 27 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 31 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 35 H 0.29 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -71.10 326.97 8.78 -62.32 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.17 Total: 4.58 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.05 Total: -24.59 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.30 Total: -54.20 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.02 Total: -25.18 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 2.31 Total: -11.49 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.96 Total: 48.57 kcal Total: -71.10 8.78 -62.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243302779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.734 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds