Wall clock time and date at job start Tue Mar 31 2020 13:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48502 * 109.47020 * 270.00377 * 3 2 1 5 5 H 1.48499 * 109.47116 * 30.00154 * 3 2 1 6 6 H 1.48492 * 109.47202 * 150.00301 * 3 2 1 7 7 C 1.38652 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00152 * 0.02562 * 7 2 1 9 9 O 1.34811 * 119.99886 * 179.97438 * 7 2 1 10 10 C 1.35658 * 117.00105 * 185.05569 * 9 7 2 11 11 C 1.38711 * 120.12008 * 354.39785 * 10 9 7 12 12 C 1.38343 * 120.02537 * 179.97438 * 11 10 9 13 13 F 1.35094 * 119.86136 * 179.97438 * 12 11 10 14 14 C 1.38678 * 120.26817 * 359.97438 * 12 11 10 15 15 C 1.37969 * 120.25144 * 359.73935 * 14 12 11 16 16 C 1.39304 * 119.96289 * 0.53247 * 15 14 12 17 17 C 1.48278 * 120.12955 * 179.74491 * 16 15 14 18 18 C 1.39452 * 120.09759 * 129.72577 * 17 16 15 19 19 C 1.38001 * 119.98323 * 180.02562 * 18 17 16 20 20 C 1.38268 * 120.18616 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.19935 * 0.02562 * 20 19 18 22 22 O 1.35905 * 119.99049 * 180.02562 * 21 20 19 23 23 C 1.42898 * 117.00571 * 359.97438 * 22 21 20 24 24 F 1.39905 * 109.46988 * 300.00754 * 23 22 21 25 25 F 1.39902 * 109.46813 * 60.00173 * 23 22 21 26 26 C 1.38531 * 120.01411 * 359.72078 * 21 20 19 27 27 H 0.96995 * 120.00528 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99001 * 359.97438 * 11 10 9 29 29 H 1.08007 * 119.87122 * 179.97438 * 14 12 11 30 30 H 1.07994 * 120.01589 * 180.28250 * 15 14 12 31 31 H 1.08002 * 120.00524 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.90795 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.89913 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.47436 * 180.02562 * 23 22 21 35 35 H 1.08002 * 120.08866 * 180.29664 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9728 -2.4047 -0.1059 11 6 3.2250 -3.5729 -0.0906 12 6 3.8551 -4.7997 -0.1993 13 9 3.1235 -5.9353 -0.1835 14 6 5.2345 -4.8684 -0.3245 15 6 5.9888 -3.7134 -0.3469 16 6 5.3653 -2.4729 -0.2324 17 6 6.1729 -1.2295 -0.2504 18 6 5.8255 -0.1823 -1.1032 19 6 6.5790 0.9737 -1.1184 20 6 7.6787 1.0977 -0.2895 21 6 8.0314 0.0602 0.5624 22 8 9.1127 0.1868 1.3758 23 6 9.8405 1.4143 1.3013 24 9 10.3254 1.5908 0.0009 25 9 8.9948 2.4786 1.6320 26 6 7.2776 -1.1018 0.5882 27 1 -0.4851 0.8400 0.0004 28 1 2.1504 -3.5247 0.0062 29 1 5.7198 -5.8296 -0.4085 30 1 7.0623 -3.7711 -0.4491 31 1 4.9673 -0.2763 -1.7523 32 1 6.3087 1.7841 -1.7791 33 1 8.2649 2.0046 -0.3048 34 1 10.6768 1.3839 1.9996 35 1 7.5482 -1.9080 1.2540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243357680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:14 Heat of formation + Delta-G solvation = -165.020407 kcal Electronic energy + Delta-G solvation = -26690.857546 eV Core-core repulsion = 22205.081802 eV Total energy + Delta-G solvation = -4485.775744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.49457 -48.41347 -47.48643 -40.04669 -39.23934 -37.35033 -36.43947 -32.59334 -31.98626 -30.33299 -29.65913 -28.16435 -26.20832 -25.47283 -23.28859 -22.40477 -21.61525 -21.03987 -18.90985 -18.28520 -18.16789 -18.05183 -17.66994 -16.29693 -15.95174 -15.70643 -15.37802 -15.14848 -14.76583 -14.67129 -14.59272 -14.14588 -14.05305 -13.89171 -13.79554 -13.64494 -13.39051 -13.31494 -12.99005 -12.73994 -12.41530 -12.32382 -11.79102 -11.74910 -11.34928 -11.12177 -10.87525 -10.81178 -10.74268 -10.35797 -9.68059 -9.04377 -8.92055 -8.33807 -8.07358 -7.48260 -6.58459 -4.25718 1.18811 1.58975 1.92473 1.96453 2.48839 3.12939 3.17161 3.31135 3.34350 3.86149 4.11099 4.12753 4.19897 4.48121 4.51192 4.82325 4.90979 4.93219 4.96273 5.22928 5.39095 5.45081 5.58423 5.59697 5.69805 5.95045 6.08757 6.18432 6.30668 6.44466 6.62462 6.65636 6.71731 6.78264 6.83958 7.00343 7.25399 7.37092 7.59165 7.82719 8.74860 9.31600 10.47827 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010846 B = 0.004886 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.041384 B = 5728.756562 C = 7910.430694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.071 3.929 3 Si 0.895 3.105 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.395 4.395 8 H 0.110 0.890 9 O -0.191 6.191 10 C 0.197 3.803 11 C -0.259 4.259 12 C 0.148 3.852 13 F -0.147 7.147 14 C -0.242 4.242 15 C -0.030 4.030 16 C -0.146 4.146 17 C 0.024 3.976 18 C -0.114 4.114 19 C -0.085 4.085 20 C -0.199 4.199 21 C 0.096 3.904 22 O -0.322 6.322 23 C 0.412 3.588 24 F -0.201 7.201 25 F -0.199 7.199 26 C -0.129 4.129 27 H 0.283 0.717 28 H 0.148 0.852 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.178 0.822 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.861 0.821 0.763 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.470 4.470 8 H 0.127 0.873 9 O -0.094 6.094 10 C 0.142 3.858 11 C -0.279 4.279 12 C 0.128 3.872 13 F -0.126 7.126 14 C -0.261 4.261 15 C -0.049 4.049 16 C -0.148 4.148 17 C 0.024 3.976 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.217 4.217 21 C 0.054 3.946 22 O -0.240 6.240 23 C 0.321 3.679 24 F -0.183 7.183 25 F -0.181 7.181 26 C -0.147 4.147 27 H 0.093 0.907 28 H 0.166 0.834 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.195 0.805 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.734 1.073 0.899 17.789 hybrid contribution -0.189 0.792 -0.110 0.821 sum 17.544 1.865 0.788 17.661 Atomic orbital electron populations 1.69631 1.05656 1.28915 1.46110 1.24457 0.94987 0.98882 0.95094 0.86321 0.80928 0.81368 0.79448 1.19453 1.20608 1.17481 1.20826 0.76576 0.96874 1.52710 0.87312 1.83610 1.22803 1.24925 1.78072 1.18648 0.90189 0.85179 0.91789 1.21113 1.02317 0.90449 1.14003 1.17547 0.89072 0.81272 0.99271 1.91437 1.77854 1.49539 1.93780 1.20529 0.91761 0.99134 1.14692 1.20545 0.98856 0.89865 0.95600 1.17783 0.89826 0.92306 1.14840 1.18316 0.92410 0.93204 0.93718 1.21332 0.99710 0.92802 0.99415 1.20857 0.93954 0.97572 0.97954 1.21414 1.01285 0.98778 1.00249 1.18640 0.87794 0.95822 0.92370 1.86575 1.40421 1.36361 1.60680 1.23294 0.87629 0.74972 0.81984 1.93089 1.88054 1.94936 1.42217 1.93104 1.74127 1.58643 1.92258 1.20417 0.95949 0.96440 1.01918 0.90696 0.83448 0.85811 0.85444 0.85113 0.85642 0.85476 0.80546 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.11 13.96 55.48 0.77 -23.33 16 2 C 0.07 1.91 5.49 -17.52 -0.10 1.81 16 3 Si 0.89 20.78 28.62 -169.99 -4.86 15.91 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.25 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.39 -10.52 9.95 30.89 0.31 -10.22 16 8 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 9 O -0.19 -4.68 6.93 0.39 0.00 -4.68 16 10 C 0.20 4.27 6.56 -38.75 -0.25 4.02 16 11 C -0.26 -5.44 9.14 -39.37 -0.36 -5.80 16 12 C 0.15 2.75 7.30 -39.38 -0.29 2.47 16 13 F -0.15 -2.70 17.26 2.25 0.04 -2.66 16 14 C -0.24 -3.90 10.01 -39.52 -0.40 -4.30 16 15 C -0.03 -0.48 9.51 -39.28 -0.37 -0.86 16 16 C -0.15 -2.73 5.49 -104.72 -0.57 -3.30 16 17 C 0.02 0.43 5.27 -104.93 -0.55 -0.13 16 18 C -0.11 -2.07 8.78 -39.22 -0.34 -2.41 16 19 C -0.09 -1.38 10.03 -39.66 -0.40 -1.77 16 20 C -0.20 -3.05 8.25 -39.36 -0.32 -3.38 16 21 C 0.10 1.48 6.48 -39.27 -0.25 1.22 16 22 O -0.32 -4.11 10.43 -19.44 -0.20 -4.31 16 23 C 0.41 3.87 5.98 101.05 0.60 4.47 16 24 F -0.20 -2.15 15.58 2.25 0.04 -2.12 16 25 F -0.20 -2.31 15.58 2.25 0.04 -2.28 16 26 C -0.13 -2.07 9.46 -39.08 -0.37 -2.44 16 27 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.15 3.28 5.64 -52.49 -0.30 2.98 16 29 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.13 1.63 8.05 -52.49 -0.42 1.21 16 31 H 0.13 2.45 7.68 -52.49 -0.40 2.05 16 32 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.13 1.77 5.08 -52.49 -0.27 1.50 16 34 H 0.18 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.13 1.89 8.05 -52.49 -0.42 1.47 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -29.19 319.85 -5.53 -34.72 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.50 Total: 4.54 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -3.67 Total: -20.61 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.77 Total: -23.33 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.20 Total: -9.00 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.86 Total: 15.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.19 -5.53 -34.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243357680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.301 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds