Wall clock time and date at job start Tue Mar 31 2020 13:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48502 * 109.47020 * 270.00377 * 3 2 1 5 5 H 1.48499 * 109.47116 * 30.00154 * 3 2 1 6 6 H 1.48492 * 109.47202 * 150.00301 * 3 2 1 7 7 C 1.38652 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00152 * 0.02562 * 7 2 1 9 9 O 1.34811 * 119.99886 * 179.97438 * 7 2 1 10 10 C 1.35658 * 117.00105 * 185.05569 * 9 7 2 11 11 C 1.38711 * 120.12008 * 354.39785 * 10 9 7 12 12 C 1.38343 * 120.02537 * 179.97438 * 11 10 9 13 13 F 1.35094 * 119.86136 * 179.97438 * 12 11 10 14 14 C 1.38678 * 120.26817 * 359.97438 * 12 11 10 15 15 C 1.37969 * 120.25144 * 359.73935 * 14 12 11 16 16 C 1.39304 * 119.96289 * 0.53247 * 15 14 12 17 17 C 1.48278 * 120.12955 * 179.74491 * 16 15 14 18 18 C 1.39452 * 120.09759 * 129.72577 * 17 16 15 19 19 C 1.38001 * 119.98323 * 180.02562 * 18 17 16 20 20 C 1.38268 * 120.18616 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.19935 * 0.02562 * 20 19 18 22 22 O 1.35905 * 119.99049 * 180.02562 * 21 20 19 23 23 C 1.42898 * 117.00571 * 359.97438 * 22 21 20 24 24 F 1.39905 * 109.46988 * 300.00754 * 23 22 21 25 25 F 1.39902 * 109.46813 * 60.00173 * 23 22 21 26 26 C 1.38531 * 120.01411 * 359.72078 * 21 20 19 27 27 H 0.96995 * 120.00528 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99001 * 359.97438 * 11 10 9 29 29 H 1.08007 * 119.87122 * 179.97438 * 14 12 11 30 30 H 1.07994 * 120.01589 * 180.28250 * 15 14 12 31 31 H 1.08002 * 120.00524 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.90795 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.89913 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.47436 * 180.02562 * 23 22 21 35 35 H 1.08002 * 120.08866 * 180.29664 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9728 -2.4047 -0.1059 11 6 3.2250 -3.5729 -0.0906 12 6 3.8551 -4.7997 -0.1993 13 9 3.1235 -5.9353 -0.1835 14 6 5.2345 -4.8684 -0.3245 15 6 5.9888 -3.7134 -0.3469 16 6 5.3653 -2.4729 -0.2324 17 6 6.1729 -1.2295 -0.2504 18 6 5.8255 -0.1823 -1.1032 19 6 6.5790 0.9737 -1.1184 20 6 7.6787 1.0977 -0.2895 21 6 8.0314 0.0602 0.5624 22 8 9.1127 0.1868 1.3758 23 6 9.8405 1.4143 1.3013 24 9 10.3254 1.5908 0.0009 25 9 8.9948 2.4786 1.6320 26 6 7.2776 -1.1018 0.5882 27 1 -0.4851 0.8400 0.0004 28 1 2.1504 -3.5247 0.0062 29 1 5.7198 -5.8296 -0.4085 30 1 7.0623 -3.7711 -0.4491 31 1 4.9673 -0.2763 -1.7523 32 1 6.3087 1.7841 -1.7791 33 1 8.2649 2.0046 -0.3048 34 1 10.6768 1.3839 1.9996 35 1 7.5482 -1.9080 1.2540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243357680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:13 Heat of formation + Delta-G solvation = -180.726635 kcal Electronic energy + Delta-G solvation = -26691.538619 eV Core-core repulsion = 22205.081802 eV Total energy + Delta-G solvation = -4486.456817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.28013 -49.91323 -48.28109 -41.40157 -40.60714 -38.66313 -37.88702 -34.54131 -33.36600 -31.53895 -31.18530 -29.59089 -27.41143 -26.97302 -24.63816 -23.73402 -23.08191 -22.35398 -20.19151 -19.90735 -19.27813 -19.04521 -18.85069 -17.50884 -17.32455 -17.18133 -16.91563 -16.65802 -16.09200 -15.89905 -15.81973 -15.60350 -15.51376 -15.05689 -14.92137 -14.88046 -14.76045 -14.61586 -14.26655 -14.04156 -13.82609 -13.67887 -13.17031 -13.07604 -12.89472 -12.52213 -12.36917 -12.31770 -12.19903 -11.94090 -11.56732 -10.97244 -10.27046 -9.68268 -9.47659 -9.00018 -8.57143 -6.29819 -0.19526 0.34822 0.43474 0.54796 1.28056 1.30171 1.49027 1.63125 2.21998 2.48625 2.58355 2.72187 2.88392 2.98157 3.31451 3.53094 3.63101 3.72789 3.83211 3.94002 4.00934 4.16041 4.22887 4.29045 4.35156 4.56441 4.70648 4.86801 5.04178 5.11747 5.19808 5.22094 5.27220 5.38367 5.49945 5.56191 5.68752 5.78447 6.04342 6.06776 6.76536 7.44830 8.53881 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010846 B = 0.004886 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.041384 B = 5728.756562 C = 7910.430694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.402 4.402 8 H 0.082 0.918 9 O -0.214 6.214 10 C 0.169 3.831 11 C -0.278 4.278 12 C 0.136 3.864 13 F -0.146 7.146 14 C -0.208 4.208 15 C -0.019 4.019 16 C -0.137 4.137 17 C 0.004 3.996 18 C -0.136 4.136 19 C -0.090 4.090 20 C -0.199 4.199 21 C 0.099 3.901 22 O -0.324 6.324 23 C 0.404 3.596 24 F -0.209 7.209 25 F -0.213 7.213 26 C -0.129 4.129 27 H 0.286 0.714 28 H 0.120 0.880 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.239 0.761 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.321 0.498 1.162 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.478 4.478 8 H 0.100 0.900 9 O -0.120 6.120 10 C 0.118 3.882 11 C -0.298 4.298 12 C 0.117 3.883 13 F -0.125 7.125 14 C -0.227 4.227 15 C -0.036 4.036 16 C -0.138 4.138 17 C 0.004 3.996 18 C -0.155 4.155 19 C -0.108 4.108 20 C -0.218 4.218 21 C 0.056 3.944 22 O -0.242 6.242 23 C 0.315 3.685 24 F -0.191 7.191 25 F -0.195 7.195 26 C -0.147 4.147 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.185 0.815 30 H 0.191 0.809 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.254 0.746 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 22.231 0.714 1.292 22.280 hybrid contribution -1.271 0.647 -0.240 1.446 sum 20.961 1.360 1.052 21.031 Atomic orbital electron populations 1.69711 1.06911 1.29753 1.49073 1.25153 0.95681 1.01772 0.95155 0.85446 0.79211 0.77869 0.79872 1.18264 1.19644 1.18264 1.20699 0.77962 0.96125 1.52967 0.90019 1.83584 1.21109 1.26163 1.81107 1.19152 0.91674 0.84616 0.92798 1.21080 1.01341 0.91977 1.15419 1.17697 0.90304 0.80363 0.99920 1.91441 1.78157 1.49090 1.93805 1.21048 0.90182 1.01222 1.10271 1.21077 1.01000 0.88215 0.93332 1.18148 0.88472 0.94286 1.12926 1.18360 0.93386 0.92962 0.94914 1.21316 0.99879 0.94057 1.00234 1.21082 0.93928 0.97399 0.98387 1.21646 1.00942 0.99428 0.99745 1.18722 0.88275 0.95328 0.92096 1.86589 1.39468 1.38311 1.59836 1.24339 0.88145 0.73304 0.82668 1.93075 1.87946 1.94850 1.43195 1.93080 1.74856 1.59270 1.92308 1.20553 0.95193 0.97479 1.01511 0.90397 0.86191 0.81544 0.80875 0.87035 0.83884 0.84028 0.74563 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 13.96 21.61 0.30 -53.47 16 2 C 0.02 1.27 5.49 84.83 0.47 1.73 16 3 Si 0.95 44.47 28.62 68.60 1.96 46.43 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.40 -22.92 9.95 67.92 0.68 -22.24 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.21 -11.02 6.93 -21.53 -0.15 -11.17 16 10 C 0.17 7.55 6.56 22.81 0.15 7.70 16 11 C -0.28 -12.18 9.14 22.41 0.20 -11.98 16 12 C 0.14 4.95 7.30 22.40 0.16 5.11 16 13 F -0.15 -5.23 17.26 44.97 0.78 -4.45 16 14 C -0.21 -5.88 10.01 22.31 0.22 -5.66 16 15 C -0.02 -0.51 9.51 22.46 0.21 -0.30 16 16 C -0.14 -4.94 5.49 -19.93 -0.11 -5.04 16 17 C 0.00 0.14 5.27 -20.06 -0.11 0.03 16 18 C -0.14 -4.89 8.78 22.51 0.20 -4.70 16 19 C -0.09 -2.79 10.03 22.22 0.22 -2.57 16 20 C -0.20 -5.65 8.25 22.41 0.18 -5.47 16 21 C 0.10 2.75 6.48 22.47 0.15 2.89 16 22 O -0.32 -7.02 10.43 -92.48 -0.96 -7.99 16 23 C 0.40 5.96 5.98 113.37 0.68 6.63 16 24 F -0.21 -3.75 15.58 44.97 0.70 -3.05 16 25 F -0.21 -4.27 15.58 44.97 0.70 -3.57 16 26 C -0.13 -3.78 9.46 22.59 0.21 -3.57 16 27 H 0.29 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.12 5.86 5.64 -2.91 -0.02 5.85 16 29 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.17 3.33 8.05 -2.91 -0.02 3.31 16 31 H 0.11 4.35 7.68 -2.91 -0.02 4.32 16 32 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.14 3.55 5.08 -2.91 -0.01 3.54 16 34 H 0.24 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.15 3.75 8.05 -2.91 -0.02 3.73 16 Total: -1.00 -68.13 319.85 8.02 -60.11 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.17 Total: 14.56 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.52 Total: -37.41 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.30 Total: -53.47 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.11 Total: -19.15 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 2.18 Total: -11.07 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.96 Total: 46.43 kcal Total: -68.13 8.02 -60.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243357680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.614 kcal (2) G-P(sol) polarization free energy of solvation -68.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds