Wall clock time and date at job start Tue Mar 31 2020 14:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48496 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47088 * 300.00317 * 3 2 1 6 6 H 1.48507 * 109.46907 * 60.00309 * 3 2 1 7 7 C 1.40175 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.40799 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.33974 * 120.28824 * 10.30684 * 9 7 2 11 11 C 1.31597 * 119.89946 * 179.97438 * 10 9 7 12 12 C 1.39200 * 120.50334 * 359.97438 * 11 10 9 13 13 N 1.31997 * 120.58994 * 359.97438 * 12 11 10 14 14 C 1.32860 * 120.07657 * 0.02562 * 13 12 11 15 15 C 1.47799 * 120.24534 * 179.97438 * 14 13 12 16 16 C 1.39739 * 120.12851 * 43.83311 * 15 14 13 17 17 C 1.37926 * 119.95698 * 179.74044 * 16 15 14 18 18 C 1.38335 * 120.20891 * 0.53756 * 17 16 15 19 19 C 1.38873 * 120.25755 * 359.71458 * 18 17 16 20 20 O 1.35908 * 119.98017 * 180.02562 * 19 18 17 21 21 C 1.42893 * 116.99889 * 0.02562 * 20 19 18 22 22 C 1.53007 * 109.47003 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46760 * 60.00600 * 22 21 20 24 24 F 1.39900 * 109.46717 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.46934 * 300.00266 * 22 21 20 26 26 C 1.38442 * 120.03827 * 0.02568 * 19 18 17 27 27 H 0.97003 * 120.00415 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.74463 * 180.26925 * 11 10 9 29 29 H 1.08004 * 119.70149 * 179.97438 * 12 11 10 30 30 H 1.07999 * 120.01704 * 0.02562 * 16 15 14 31 31 H 1.07998 * 119.89286 * 180.23601 * 17 16 15 32 32 H 1.08002 * 119.86925 * 179.70115 * 18 17 16 33 33 H 1.08992 * 109.47690 * 300.00074 * 21 20 19 34 34 H 1.09005 * 109.47260 * 60.00181 * 21 20 19 35 35 H 1.07993 * 120.10360 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3465 -0.0006 5 1 1.8820 2.3964 -1.2124 6 1 1.8821 2.3964 1.2126 7 6 2.0077 -1.2139 -0.0005 8 1 3.0877 -1.2139 -0.0010 9 6 1.3037 -2.4333 -0.0005 10 7 -0.0200 -2.4493 -0.2070 11 6 -0.6702 -3.5934 -0.2059 12 6 0.0068 -4.7907 0.0079 13 7 1.3108 -4.7978 0.2124 14 6 1.9904 -3.6562 0.2161 15 6 3.4505 -3.6597 0.4452 16 6 4.2585 -4.6039 -0.1938 17 6 5.6213 -4.6006 0.0184 18 6 6.1908 -3.6720 0.8710 19 6 5.3955 -2.7330 1.5147 20 8 5.9609 -1.8229 2.3508 21 6 7.3782 -1.8902 2.5200 22 6 7.8287 -0.7950 3.4889 23 9 7.2021 -0.9802 4.7260 24 9 9.2164 -0.8605 3.6541 25 9 7.4796 0.4573 2.9721 26 6 4.0270 -2.7234 1.3052 27 1 -0.4851 0.8400 0.0004 28 1 -1.7366 -3.6038 -0.3770 29 1 -0.5399 -5.7222 0.0065 30 1 3.8166 -5.3329 -0.8570 31 1 6.2453 -5.3284 -0.4790 32 1 7.2579 -3.6774 1.0369 33 1 7.6502 -2.8659 2.9222 34 1 7.8665 -1.7455 1.5563 35 1 3.4076 -1.9939 1.8055 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243389426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:28 Heat of formation + Delta-G solvation = -122.836141 kcal Electronic energy + Delta-G solvation = -26600.300677 eV Core-core repulsion = 22148.646932 eV Total energy + Delta-G solvation = -4451.653746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.27916 -47.84878 -47.70797 -40.00096 -39.02847 -37.06267 -34.25149 -32.49904 -31.53401 -31.00010 -28.91253 -28.76188 -26.25472 -24.20544 -23.04021 -22.39738 -21.67618 -20.72517 -18.83862 -18.79612 -17.94889 -17.70267 -17.54905 -16.17058 -15.83633 -15.58263 -15.34209 -14.93374 -14.68913 -14.65085 -14.54272 -14.18703 -14.17543 -13.89240 -13.89067 -13.53950 -13.11720 -12.89939 -12.73851 -12.47619 -12.15809 -11.77630 -11.56332 -11.45301 -11.18254 -11.10418 -10.85367 -10.52507 -10.26577 -9.93192 -9.66487 -9.30054 -8.53964 -7.95338 -7.68016 -7.48493 -6.69090 -4.81107 1.56148 1.90112 2.16723 2.46587 2.88475 2.98431 3.02782 3.04709 3.11481 3.55122 3.76573 3.76723 4.21926 4.26521 4.52061 4.68758 4.75761 5.13984 5.16799 5.45243 5.56301 5.76571 5.82854 5.91790 6.04458 6.18776 6.34681 6.49674 6.60885 6.65017 6.83789 6.89977 6.90741 7.13416 7.32113 7.54350 7.59914 7.93185 8.24514 8.50830 9.09018 9.68315 9.95638 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.004468 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.324102 B = 6265.031092 C = 7982.301550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.400 4.400 8 H 0.102 0.898 9 C 0.222 3.778 10 N -0.452 5.452 11 C 0.091 3.909 12 C -0.117 4.117 13 N -0.407 5.407 14 C -0.041 4.041 15 C 0.069 3.931 16 C -0.136 4.136 17 C -0.088 4.088 18 C -0.226 4.226 19 C 0.114 3.886 20 O -0.301 6.301 21 C 0.017 3.983 22 C 0.464 3.536 23 F -0.174 7.174 24 F -0.176 7.176 25 F -0.173 7.173 26 C -0.125 4.125 27 H 0.280 0.720 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 -1.231 3.057 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.162 4.162 3 Si 0.729 3.271 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.429 4.429 8 H 0.120 0.880 9 C 0.098 3.902 10 N -0.168 5.168 11 C -0.081 4.081 12 C -0.279 4.279 13 N -0.119 5.119 14 C -0.186 4.186 15 C 0.068 3.932 16 C -0.156 4.156 17 C -0.106 4.106 18 C -0.245 4.245 19 C 0.070 3.930 20 O -0.216 6.216 21 C -0.061 4.061 22 C 0.409 3.591 23 F -0.155 7.155 24 F -0.158 7.158 25 F -0.154 7.154 26 C -0.144 4.144 27 H 0.092 0.908 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.529 -0.859 3.186 12.957 hybrid contribution 0.417 0.688 0.043 0.806 sum 12.946 -0.171 3.230 13.344 Atomic orbital electron populations 1.70029 1.07556 1.28896 1.25735 1.26222 0.94988 1.01713 0.93308 0.86232 0.81432 0.80364 0.79026 1.17516 1.19398 1.19277 1.19983 0.95429 0.88973 1.38563 0.87988 1.19211 0.88932 0.92273 0.89803 1.69528 1.07569 1.24704 1.15034 1.23567 0.99962 0.90326 0.94221 1.22568 0.91217 0.98019 1.16082 1.67652 1.08350 1.29237 1.06708 1.20000 0.92298 0.90607 1.15732 1.18093 0.91297 0.91956 0.91880 1.21224 0.92789 0.99892 1.01662 1.20698 0.94826 0.97683 0.97369 1.21006 0.98876 1.00139 1.04502 1.18692 0.92602 0.89691 0.91986 1.86044 1.18349 1.53804 1.63360 1.23676 0.84682 0.97846 0.99895 1.20093 0.74932 0.83016 0.81041 1.93234 1.82118 1.95113 1.45038 1.93206 1.30325 1.96437 1.95799 1.93245 1.91678 1.44028 1.86447 1.20688 0.90973 1.01843 1.00937 0.90831 0.85070 0.85274 0.86051 0.86302 0.86437 0.87652 0.87614 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.55 11.54 55.56 0.64 -16.91 16 2 C 0.07 1.57 5.49 -17.32 -0.10 1.48 16 3 Si 0.91 17.82 29.56 -169.99 -5.03 12.79 16 4 H -0.25 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.40 -9.99 7.45 -37.89 -0.28 -10.27 16 8 H 0.10 2.42 5.37 -52.48 -0.28 2.14 16 9 C 0.22 5.79 6.51 -84.56 -0.55 5.24 16 10 N -0.45 -11.90 8.12 -10.73 -0.09 -11.98 16 11 C 0.09 2.10 11.22 -17.29 -0.19 1.90 16 12 C -0.12 -2.60 11.22 -17.12 -0.19 -2.79 16 13 N -0.41 -9.74 10.30 -8.97 -0.09 -9.83 16 14 C -0.04 -0.99 6.42 -82.11 -0.53 -1.51 16 15 C 0.07 1.48 5.28 -104.92 -0.55 0.92 16 16 C -0.14 -2.51 9.67 -39.13 -0.38 -2.89 16 17 C -0.09 -1.32 10.03 -39.66 -0.40 -1.71 16 18 C -0.23 -3.25 9.04 -39.31 -0.36 -3.61 16 19 C 0.11 1.92 6.68 -39.27 -0.26 1.66 16 20 O -0.30 -4.68 10.02 -19.45 -0.19 -4.87 16 21 C 0.02 0.18 4.70 37.16 0.17 0.35 16 22 C 0.46 5.27 3.32 37.16 0.12 5.39 16 23 F -0.17 -2.23 17.26 2.25 0.04 -2.19 16 24 F -0.18 -1.78 17.32 2.25 0.04 -1.74 16 25 F -0.17 -2.28 17.26 2.25 0.04 -2.25 16 26 C -0.12 -2.51 7.48 -39.00 -0.29 -2.80 16 27 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 28 H 0.13 2.55 8.06 -52.48 -0.42 2.13 16 29 H 0.13 2.44 8.06 -52.48 -0.42 2.01 16 30 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.26 6.28 -52.49 -0.33 0.93 16 33 H 0.11 0.88 7.65 -51.93 -0.40 0.48 16 34 H 0.11 0.91 7.66 -51.93 -0.40 0.51 16 35 H 0.14 3.09 6.73 -52.49 -0.35 2.73 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -29.05 321.40 -6.16 -35.22 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.59 Total: 5.55 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -3.78 Total: -8.63 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.46 Total: -38.73 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.19 Total: -4.87 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.12 Total: -6.18 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.05 -6.16 -35.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243389426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.618 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds