Wall clock time and date at job start Tue Mar 31 2020 14:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48496 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47088 * 300.00317 * 3 2 1 6 6 H 1.48507 * 109.46907 * 60.00309 * 3 2 1 7 7 C 1.40175 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.40799 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.33974 * 120.28824 * 10.30684 * 9 7 2 11 11 C 1.31597 * 119.89946 * 179.97438 * 10 9 7 12 12 C 1.39200 * 120.50334 * 359.97438 * 11 10 9 13 13 N 1.31997 * 120.58994 * 359.97438 * 12 11 10 14 14 C 1.32860 * 120.07657 * 0.02562 * 13 12 11 15 15 C 1.47799 * 120.24534 * 179.97438 * 14 13 12 16 16 C 1.39739 * 120.12851 * 43.83311 * 15 14 13 17 17 C 1.37926 * 119.95698 * 179.74044 * 16 15 14 18 18 C 1.38335 * 120.20891 * 0.53756 * 17 16 15 19 19 C 1.38873 * 120.25755 * 359.71458 * 18 17 16 20 20 O 1.35908 * 119.98017 * 180.02562 * 19 18 17 21 21 C 1.42893 * 116.99889 * 0.02562 * 20 19 18 22 22 C 1.53007 * 109.47003 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46760 * 60.00600 * 22 21 20 24 24 F 1.39900 * 109.46717 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.46934 * 300.00266 * 22 21 20 26 26 C 1.38442 * 120.03827 * 0.02568 * 19 18 17 27 27 H 0.97003 * 120.00415 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.74463 * 180.26925 * 11 10 9 29 29 H 1.08004 * 119.70149 * 179.97438 * 12 11 10 30 30 H 1.07999 * 120.01704 * 0.02562 * 16 15 14 31 31 H 1.07998 * 119.89286 * 180.23601 * 17 16 15 32 32 H 1.08002 * 119.86925 * 179.70115 * 18 17 16 33 33 H 1.08992 * 109.47690 * 300.00074 * 21 20 19 34 34 H 1.09005 * 109.47260 * 60.00181 * 21 20 19 35 35 H 1.07993 * 120.10360 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3465 -0.0006 5 1 1.8820 2.3964 -1.2124 6 1 1.8821 2.3964 1.2126 7 6 2.0077 -1.2139 -0.0005 8 1 3.0877 -1.2139 -0.0010 9 6 1.3037 -2.4333 -0.0005 10 7 -0.0200 -2.4493 -0.2070 11 6 -0.6702 -3.5934 -0.2059 12 6 0.0068 -4.7907 0.0079 13 7 1.3108 -4.7978 0.2124 14 6 1.9904 -3.6562 0.2161 15 6 3.4505 -3.6597 0.4452 16 6 4.2585 -4.6039 -0.1938 17 6 5.6213 -4.6006 0.0184 18 6 6.1908 -3.6720 0.8710 19 6 5.3955 -2.7330 1.5147 20 8 5.9609 -1.8229 2.3508 21 6 7.3782 -1.8902 2.5200 22 6 7.8287 -0.7950 3.4889 23 9 7.2021 -0.9802 4.7260 24 9 9.2164 -0.8605 3.6541 25 9 7.4796 0.4573 2.9721 26 6 4.0270 -2.7234 1.3052 27 1 -0.4851 0.8400 0.0004 28 1 -1.7366 -3.6038 -0.3770 29 1 -0.5399 -5.7222 0.0065 30 1 3.8166 -5.3329 -0.8570 31 1 6.2453 -5.3284 -0.4790 32 1 7.2579 -3.6774 1.0369 33 1 7.6502 -2.8659 2.9222 34 1 7.8665 -1.7455 1.5563 35 1 3.4076 -1.9939 1.8055 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243389426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:27 Heat of formation + Delta-G solvation = -139.882504 kcal Electronic energy + Delta-G solvation = -26601.039863 eV Core-core repulsion = 22148.646932 eV Total energy + Delta-G solvation = -4452.392931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.17815 -48.71764 -48.66652 -41.34905 -40.65500 -38.37549 -36.04768 -34.20586 -33.17492 -32.11273 -30.36305 -30.05330 -28.03906 -25.47641 -24.36918 -24.01081 -23.15925 -22.10562 -19.86133 -19.70651 -19.60928 -18.83512 -18.72648 -17.90939 -17.00492 -16.83872 -16.78229 -16.51536 -16.14369 -15.79907 -15.55443 -15.48488 -15.09884 -15.00583 -14.83204 -14.81198 -14.65990 -14.43009 -14.13231 -13.67587 -13.60813 -13.29274 -13.05959 -12.88950 -12.60775 -12.42809 -12.19434 -12.00270 -11.86919 -11.61262 -11.51816 -11.08266 -10.11629 -9.49630 -9.31542 -9.08198 -8.47499 -6.65716 0.08774 0.56772 0.75973 1.15725 1.26181 1.35218 1.46905 1.50697 2.05224 2.13035 2.68600 2.70075 2.88768 2.94436 3.30621 3.73490 3.77352 3.87252 3.99851 4.05618 4.15013 4.20779 4.32972 4.44316 4.57193 4.66163 4.74913 4.93276 5.07686 5.15372 5.19059 5.31907 5.54367 5.72944 5.80084 5.89217 6.10821 6.35414 6.43534 6.67821 7.27366 7.85455 8.21690 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.004468 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.324102 B = 6265.031092 C = 7982.301550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.026 3.974 3 Si 0.976 3.024 4 H -0.251 1.251 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.422 4.422 8 H 0.105 0.895 9 C 0.191 3.809 10 N -0.489 5.489 11 C 0.077 3.923 12 C -0.118 4.118 13 N -0.424 5.424 14 C -0.049 4.049 15 C 0.035 3.965 16 C -0.149 4.149 17 C -0.073 4.073 18 C -0.204 4.204 19 C 0.118 3.882 20 O -0.324 6.324 21 C 0.009 3.991 22 C 0.465 3.535 23 F -0.186 7.186 24 F -0.166 7.166 25 F -0.187 7.187 26 C -0.148 4.148 27 H 0.287 0.713 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.116 0.884 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.034 -1.924 2.880 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.175 1.175 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.122 0.878 9 C 0.066 3.934 10 N -0.206 5.206 11 C -0.094 4.094 12 C -0.279 4.279 13 N -0.136 5.136 14 C -0.194 4.194 15 C 0.033 3.967 16 C -0.168 4.168 17 C -0.090 4.090 18 C -0.223 4.223 19 C 0.075 3.925 20 O -0.239 6.239 21 C -0.068 4.068 22 C 0.411 3.589 23 F -0.167 7.167 24 F -0.147 7.147 25 F -0.168 7.168 26 C -0.168 4.168 27 H 0.099 0.901 28 H 0.179 0.821 29 H 0.182 0.818 30 H 0.134 0.866 31 H 0.181 0.819 32 H 0.187 0.813 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.727 -1.579 3.013 16.090 hybrid contribution -0.466 0.785 0.171 0.929 sum 15.261 -0.794 3.184 15.610 Atomic orbital electron populations 1.70093 1.08991 1.30136 1.26952 1.27057 0.95691 1.04645 0.92409 0.85225 0.79876 0.76033 0.79367 1.17452 1.18329 1.18727 1.20193 0.95692 0.89567 1.39722 0.87759 1.19648 0.89409 0.93613 0.90685 1.69465 1.08185 1.26436 1.16492 1.24085 1.01396 0.89971 0.93900 1.23147 0.91082 0.99224 1.14459 1.67752 1.09082 1.29204 1.07589 1.20493 0.94231 0.90161 1.14552 1.18116 0.90109 0.94214 0.94256 1.21291 0.94435 0.99258 1.01810 1.21152 0.93467 0.97967 0.96436 1.21523 1.01042 0.97742 1.01993 1.18639 0.91644 0.90248 0.92007 1.85993 1.21335 1.53586 1.62939 1.24103 0.82143 0.99074 1.01447 1.20232 0.75251 0.82725 0.80735 1.93214 1.82460 1.95121 1.45942 1.93228 1.29413 1.96352 1.95736 1.93220 1.91880 1.45162 1.86584 1.20461 0.92715 1.01697 1.01951 0.90147 0.82107 0.81816 0.86595 0.81892 0.81303 0.84377 0.84589 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.57 11.54 21.86 0.25 -38.32 16 2 C 0.03 1.30 5.49 85.34 0.47 1.77 16 3 Si 0.98 37.46 29.56 68.60 2.03 39.48 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.42 -22.17 7.45 23.37 0.17 -22.00 16 8 H 0.10 5.23 5.37 -2.91 -0.02 5.22 16 9 C 0.19 10.50 6.51 40.35 0.26 10.76 16 10 N -0.49 -26.89 8.12 -187.85 -1.53 -28.42 16 11 C 0.08 3.62 11.22 84.96 0.95 4.57 16 12 C -0.12 -5.29 11.22 84.90 0.95 -4.34 16 13 N -0.42 -20.78 10.30 -182.30 -1.88 -22.66 16 14 C -0.05 -2.47 6.42 42.43 0.27 -2.20 16 15 C 0.03 1.51 5.28 -20.06 -0.11 1.40 16 16 C -0.15 -5.32 9.67 22.56 0.22 -5.11 16 17 C -0.07 -1.88 10.03 22.22 0.22 -1.66 16 18 C -0.20 -4.92 9.04 22.44 0.20 -4.71 16 19 C 0.12 3.78 6.68 22.47 0.15 3.93 16 20 O -0.32 -9.38 10.02 -92.51 -0.93 -10.31 16 21 C 0.01 0.15 4.70 71.98 0.34 0.49 16 22 C 0.46 9.38 3.32 71.98 0.24 9.62 16 23 F -0.19 -4.49 17.26 44.97 0.78 -3.71 16 24 F -0.17 -2.84 17.32 44.97 0.78 -2.06 16 25 F -0.19 -4.65 17.26 44.97 0.78 -3.87 16 26 C -0.15 -6.11 7.48 22.65 0.17 -5.94 16 27 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 28 H 0.16 6.31 8.06 -2.91 -0.02 6.29 16 29 H 0.16 6.01 8.06 -2.91 -0.02 5.98 16 30 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.17 2.33 6.28 -2.91 -0.02 2.32 16 33 H 0.14 1.54 7.65 -2.39 -0.02 1.52 16 34 H 0.14 1.59 7.66 -2.38 -0.02 1.57 16 35 H 0.11 5.20 6.73 -2.91 -0.02 5.19 16 Total: -1.00 -68.13 321.40 5.97 -62.16 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.17 Total: 21.11 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.52 Total: -13.40 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.15 Total: -89.39 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.93 Total: -10.31 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 2.33 Total: -9.65 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.48 kcal Total: -68.13 5.97 -62.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243389426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.723 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds