Wall clock time and date at job start Tue Mar 31 2020 14:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48495 * 109.47259 * 93.67460 * 3 2 1 5 5 H 1.48501 * 109.46991 * 213.67522 * 3 2 1 6 6 H 1.48498 * 109.47027 * 333.67271 * 3 2 1 7 7 C 1.40049 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00055 * 9.45241 * 7 2 1 9 9 C 1.41328 * 120.00378 * 189.44850 * 7 2 1 10 10 C 1.40860 * 120.15298 * 187.87487 * 9 7 2 11 11 N 1.31853 * 119.96236 * 179.79650 * 10 9 7 12 12 C 1.32212 * 120.28446 * 0.46525 * 11 10 9 13 13 C 1.39983 * 120.29679 * 359.76939 * 12 11 10 14 14 C 1.48303 * 119.98580 * 179.97438 * 13 12 11 15 15 C 1.39438 * 120.10468 * 180.02562 * 14 13 12 16 16 C 1.38001 * 119.98769 * 179.97438 * 15 14 13 17 17 C 1.38262 * 120.18845 * 359.97438 * 16 15 14 18 18 C 1.38803 * 120.19612 * 359.97438 * 17 16 15 19 19 O 1.35904 * 119.99335 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99992 * 359.97438 * 19 18 17 21 21 C 1.53002 * 109.46981 * 180.02562 * 20 19 18 22 22 F 1.39905 * 109.46757 * 60.00708 * 21 20 19 23 23 F 1.39904 * 109.47016 * 180.02562 * 21 20 19 24 24 F 1.39899 * 109.47644 * 300.00227 * 21 20 19 25 25 C 1.38529 * 120.01514 * 359.79097 * 18 17 16 26 26 N 1.32548 * 120.03273 * 0.02562 * 13 12 11 27 27 H 0.97002 * 119.99906 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.01553 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.85196 * 179.74679 * 12 11 10 30 30 H 1.08007 * 120.00243 * 359.96141 * 15 14 13 31 31 H 1.08006 * 119.91059 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.90649 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.47158 * 300.00365 * 20 19 18 34 34 H 1.08994 * 109.46660 * 60.00804 * 20 19 18 35 35 H 1.07991 * 120.09776 * 180.25717 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.5665 2.0016 1.3971 5 1 3.4978 1.4638 -0.7763 6 1 1.4021 2.6738 -0.6209 7 6 2.0075 -1.2129 0.0005 8 1 1.4784 -2.1419 -0.1527 9 6 3.4064 -1.2212 0.2015 10 6 4.1374 -2.4142 0.0389 11 7 5.4430 -2.4169 0.2234 12 6 6.0696 -1.3054 0.5698 13 6 5.3537 -0.1145 0.7392 14 6 6.0635 1.1281 1.1284 15 6 5.3527 2.3156 1.2983 16 6 6.0156 3.4704 1.6610 17 6 7.3841 3.4540 1.8574 18 6 8.0991 2.2759 1.6913 19 8 9.4441 2.2644 1.8859 20 6 10.0563 3.5005 2.2593 21 6 11.5622 3.2923 2.4316 22 9 12.1122 2.8453 1.2253 23 9 12.1614 4.5023 2.7977 24 9 11.7901 2.3389 3.4297 25 6 7.4414 1.1109 1.3321 26 7 4.0415 -0.0971 0.5529 27 1 -0.4850 0.8401 -0.0004 28 1 3.6293 -3.3254 -0.2403 29 1 7.1386 -1.3164 0.7231 30 1 4.2836 2.3317 1.1459 31 1 5.4638 4.3894 1.7927 32 1 7.8982 4.3603 2.1415 33 1 9.8792 4.2432 1.4814 34 1 9.6275 3.8490 3.1988 35 1 7.9958 0.1927 1.2066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243389587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:31 Heat of formation + Delta-G solvation = -129.406362 kcal Electronic energy + Delta-G solvation = -26086.025702 eV Core-core repulsion = 21634.087050 eV Total energy + Delta-G solvation = -4451.938652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.48902 -48.05275 -47.92645 -40.41168 -39.45103 -37.51605 -34.24357 -33.06486 -32.07593 -31.35955 -29.49438 -29.06245 -26.30609 -24.56653 -23.45793 -23.08064 -21.71176 -20.88959 -19.08785 -19.01722 -18.22585 -18.02223 -17.72977 -16.57074 -16.17080 -16.16463 -15.43658 -15.37762 -15.14850 -14.84950 -14.76425 -14.39527 -14.20509 -14.10427 -14.10163 -13.76542 -13.54199 -13.38264 -13.02539 -12.82433 -12.35436 -12.09148 -12.00154 -11.50099 -11.42468 -11.24676 -11.03273 -10.84957 -10.70901 -10.05186 -9.62552 -9.29245 -8.99865 -8.36575 -7.81163 -7.64454 -7.16976 -4.98418 0.94836 1.47213 1.89659 2.29499 2.55380 2.73042 3.19240 3.27611 3.31294 3.40987 3.53641 3.86556 3.96161 4.11932 4.41104 4.42040 4.50746 4.70509 4.78303 5.00084 5.27667 5.34607 5.43591 5.48440 5.67756 5.90338 5.95648 6.08514 6.19960 6.38228 6.49299 6.61018 6.69607 6.81651 6.90819 7.15679 7.36581 7.82349 8.09928 8.22584 8.77396 9.21232 9.72311 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.003054 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.586401 B = 9167.136189 C =10172.045112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.076 3.924 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.252 1.252 6 H -0.325 1.325 7 C -0.384 4.384 8 H 0.104 0.896 9 C 0.194 3.806 10 C -0.030 4.030 11 N -0.421 5.421 12 C -0.099 4.099 13 C 0.156 3.844 14 C 0.017 3.983 15 C -0.130 4.130 16 C -0.086 4.086 17 C -0.207 4.207 18 C 0.116 3.884 19 O -0.301 6.301 20 C 0.015 3.985 21 C 0.465 3.535 22 F -0.173 7.173 23 F -0.174 7.174 24 F -0.173 7.173 25 C -0.124 4.124 26 N -0.532 5.532 27 H 0.294 0.706 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 11.337 4.490 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.148 4.148 3 Si 0.827 3.173 4 H -0.197 1.197 5 H -0.178 1.178 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.122 0.878 9 C 0.069 3.931 10 C -0.202 4.202 11 N -0.132 5.132 12 C -0.255 4.255 13 C 0.013 3.987 14 C 0.015 3.985 15 C -0.148 4.148 16 C -0.104 4.104 17 C -0.226 4.226 18 C 0.072 3.928 19 O -0.215 6.215 20 C -0.062 4.062 21 C 0.411 3.589 22 F -0.154 7.154 23 F -0.155 7.155 24 F -0.154 7.154 25 C -0.144 4.144 26 N -0.254 5.254 27 H 0.104 0.896 28 H 0.162 0.838 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.392 11.164 4.473 19.534 hybrid contribution 0.323 0.874 0.134 0.942 sum 15.715 12.039 4.608 20.325 Atomic orbital electron populations 1.69597 1.08650 1.31650 1.30515 1.26500 0.95041 1.03981 0.89320 0.84893 0.77226 0.75407 0.79743 1.19705 1.17792 1.25792 1.19582 0.89024 0.96203 1.36805 0.87761 1.19370 0.94640 0.88195 0.90916 1.23215 0.89903 0.98710 1.08366 1.67747 1.10359 1.28412 1.06645 1.22489 0.99496 0.89208 1.14309 1.20128 0.90924 0.92182 0.95455 1.18437 0.91262 0.92553 0.96211 1.21828 1.01939 0.91721 0.99326 1.20884 0.93328 0.98331 0.97854 1.21173 0.95712 0.96794 1.08926 1.18603 0.80526 0.94649 0.98994 1.86020 1.20015 1.30601 1.84864 1.23740 0.88046 0.89202 1.05253 1.20026 0.90238 0.74148 0.74524 1.93244 1.87691 1.89301 1.45191 1.93223 1.85320 1.45263 1.91730 1.93242 1.95702 1.64825 1.61662 1.20426 0.93185 0.96949 1.03791 1.67525 1.07749 1.28353 1.21811 0.89607 0.83781 0.84462 0.84340 0.85430 0.85661 0.87385 0.87377 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.54 13.92 55.55 0.77 -18.77 16 2 C 0.08 1.91 5.52 -17.34 -0.10 1.82 16 3 Si 0.99 22.41 22.92 -169.99 -3.90 18.52 16 4 H -0.27 -5.97 6.13 56.52 0.35 -5.62 16 5 H -0.25 -5.93 6.28 56.52 0.36 -5.57 16 6 H -0.33 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.38 -9.76 9.71 -37.73 -0.37 -10.13 16 8 H 0.10 2.64 8.06 -52.48 -0.42 2.21 16 9 C 0.19 4.80 6.33 -84.84 -0.54 4.26 16 10 C -0.03 -0.69 10.98 -16.55 -0.18 -0.87 16 11 N -0.42 -9.62 10.47 -12.06 -0.13 -9.75 16 12 C -0.10 -2.12 10.62 -16.73 -0.18 -2.30 16 13 C 0.16 3.45 6.74 -82.76 -0.56 2.89 16 14 C 0.02 0.32 5.87 -104.92 -0.62 -0.30 16 15 C -0.13 -2.32 9.54 -39.22 -0.37 -2.70 16 16 C -0.09 -1.18 10.03 -39.66 -0.40 -1.58 16 17 C -0.21 -2.47 9.03 -39.36 -0.36 -2.83 16 18 C 0.12 1.57 6.68 -39.27 -0.26 1.31 16 19 O -0.30 -3.60 10.02 -19.44 -0.19 -3.80 16 20 C 0.02 0.12 4.70 37.16 0.17 0.29 16 21 C 0.47 4.11 3.32 37.16 0.12 4.23 16 22 F -0.17 -1.80 17.26 2.25 0.04 -1.76 16 23 F -0.17 -1.41 17.32 2.25 0.04 -1.37 16 24 F -0.17 -1.80 17.26 2.25 0.04 -1.76 16 25 C -0.12 -1.97 9.37 -39.08 -0.37 -2.34 16 26 N -0.53 -12.93 4.26 -7.51 -0.03 -12.97 16 27 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 28 H 0.14 3.00 8.06 -52.49 -0.42 2.57 16 29 H 0.14 2.52 6.19 -52.49 -0.32 2.20 16 30 H 0.14 2.75 3.03 -52.48 -0.16 2.59 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 32 H 0.13 1.02 6.28 -52.49 -0.33 0.69 16 33 H 0.11 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.11 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.14 2.08 6.19 -52.49 -0.32 1.76 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -28.23 310.83 -5.10 -33.34 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -2.44 Total: 1.86 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.99 Total: -8.23 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.62 Total: -41.48 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.19 Total: -3.80 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.12 Total: -4.89 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -3.90 Total: 18.52 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.23 -5.10 -33.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243389587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.070 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds