Wall clock time and date at job start Tue Mar 31 2020 14:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00142 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99967 * 3 2 1 7 7 C 1.40139 * 119.99880 * 180.27356 * 2 1 3 8 8 H 1.08002 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.41082 * 120.00205 * 0.02562 * 7 2 1 10 10 N 1.33640 * 119.13469 * 359.72790 * 9 7 2 11 11 C 1.31594 * 120.83129 * 179.71447 * 10 9 7 12 12 C 1.40423 * 119.09133 * 0.55021 * 11 10 9 13 13 C 1.47944 * 120.78989 * 179.70367 * 12 11 10 14 14 C 1.39697 * 120.11929 * 179.74447 * 13 12 11 15 15 C 1.37929 * 119.96226 * 179.74012 * 14 13 12 16 16 C 1.38336 * 120.20244 * 0.54170 * 15 14 13 17 17 C 1.38889 * 120.24404 * 359.71246 * 16 15 14 18 18 O 1.35896 * 119.98471 * 180.02562 * 17 16 15 19 19 C 1.42897 * 117.00119 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47379 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47622 * 59.99623 * 20 19 18 22 22 F 1.39905 * 109.47273 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.47017 * 299.99763 * 20 19 18 24 24 C 1.38446 * 120.03232 * 0.02572 * 17 16 15 25 25 C 1.40425 * 118.42033 * 359.72426 * 12 11 10 26 26 N 1.31592 * 119.09375 * 0.02562 * 25 12 11 27 27 H 0.97005 * 120.00023 * 359.72375 * 1 2 3 28 28 H 1.07995 * 120.45356 * 180.25521 * 11 10 9 29 29 H 1.08007 * 120.02384 * 0.02562 * 14 13 12 30 30 H 1.07997 * 119.90337 * 180.25384 * 15 14 13 31 31 H 1.07998 * 119.88297 * 179.74227 * 16 15 14 32 32 H 1.09010 * 109.47221 * 300.00381 * 19 18 17 33 33 H 1.08999 * 109.47188 * 60.00018 * 19 18 17 34 34 H 1.08001 * 120.09981 * 179.97438 * 24 17 16 35 35 H 1.07997 * 120.45549 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0073 -1.2136 -0.0058 8 1 3.0873 -1.2136 -0.0062 9 6 1.3019 -2.4354 -0.0122 10 7 -0.0343 -2.4153 -0.0070 11 6 -0.7257 -3.5349 -0.0184 12 6 -0.0404 -4.7605 -0.0242 13 6 -0.7801 -6.0418 -0.0304 14 6 -0.0842 -7.2530 -0.0415 15 6 -0.7770 -8.4456 -0.0418 16 6 -2.1604 -8.4468 -0.0423 17 6 -2.8610 -7.2475 -0.0366 18 8 -4.2199 -7.2548 -0.0366 19 6 -4.8618 -8.5315 -0.0422 20 6 -6.3797 -8.3392 -0.0420 21 9 -6.7591 -7.6215 -1.1814 22 9 -7.0081 -9.5891 -0.0468 23 9 -6.7599 -7.6311 1.1032 24 6 -2.1755 -6.0447 -0.0308 25 6 1.3637 -4.7412 -0.0237 26 7 1.9876 -3.5826 -0.0172 27 1 -0.4850 0.8401 0.0041 28 1 -1.8054 -3.5115 -0.0183 29 1 0.9959 -7.2556 -0.0453 30 1 -0.2380 -9.3814 -0.0463 31 1 -2.6977 -9.3836 -0.0468 32 1 -4.5659 -9.0831 -0.9346 33 1 -4.5660 -9.0908 0.8454 34 1 -2.7192 -5.1115 -0.0268 35 1 1.9239 -5.6645 -0.0285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243391122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:33 Heat of formation + Delta-G solvation = -121.961306 kcal Electronic energy + Delta-G solvation = -25545.847718 eV Core-core repulsion = 21094.231908 eV Total energy + Delta-G solvation = -4451.615810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.39638 -47.96254 -47.83092 -40.13190 -39.05755 -37.28014 -34.10870 -32.25832 -31.83763 -31.22359 -29.25480 -28.84157 -26.24362 -24.07392 -23.49440 -22.64274 -21.49224 -20.78278 -18.96680 -18.91872 -18.12675 -18.00587 -17.62452 -16.23701 -16.00642 -15.98344 -15.32193 -15.00661 -14.76226 -14.66541 -14.51384 -14.30416 -14.04295 -14.01187 -14.00797 -13.29805 -13.26877 -13.18281 -12.82579 -12.63738 -12.31750 -12.03289 -11.59520 -11.47901 -11.29952 -11.25570 -10.95198 -10.69973 -10.47096 -9.79396 -9.36692 -9.32210 -9.06256 -8.18035 -7.49978 -7.49726 -6.77081 -4.91562 1.32370 1.70887 2.03481 2.59952 2.86624 2.88102 2.93137 2.95961 3.02171 3.42605 3.64248 3.70638 4.09184 4.11739 4.53128 4.56010 4.62997 4.99600 5.07689 5.38414 5.55217 5.60812 5.74205 5.75319 5.80757 5.88294 6.14189 6.26630 6.46172 6.59071 6.67959 6.77292 6.88273 6.96945 7.32051 7.40881 7.48381 7.91795 8.25063 8.33183 8.90358 9.86861 10.06078 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020136 B = 0.002511 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.223825 B =11149.729127 C =12360.153785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.058 3.942 3 Si 0.925 3.075 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.368 4.368 8 H 0.098 0.902 9 C 0.377 3.623 10 N -0.509 5.509 11 C 0.187 3.813 12 C -0.338 4.338 13 C 0.080 3.920 14 C -0.176 4.176 15 C -0.068 4.068 16 C -0.249 4.249 17 C 0.133 3.867 18 O -0.304 6.304 19 C 0.017 3.983 20 C 0.464 3.536 21 F -0.173 7.173 22 F -0.175 7.175 23 F -0.173 7.173 24 C -0.171 4.171 25 C 0.194 3.806 26 N -0.593 5.593 27 H 0.282 0.718 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 -14.095 -0.088 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.172 4.172 3 Si 0.747 3.253 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.401 4.401 8 H 0.116 0.884 9 C 0.146 3.854 10 N -0.224 5.224 11 C 0.009 3.991 12 C -0.348 4.348 13 C 0.078 3.922 14 C -0.195 4.195 15 C -0.087 4.087 16 C -0.268 4.268 17 C 0.089 3.911 18 O -0.218 6.218 19 C -0.060 4.060 20 C 0.410 3.590 21 F -0.155 7.155 22 F -0.157 7.157 23 F -0.155 7.155 24 C -0.190 4.190 25 C 0.018 3.982 26 N -0.311 5.311 27 H 0.093 0.907 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.395 -12.674 -0.077 15.202 hybrid contribution -0.525 -0.553 -0.007 0.762 sum -8.920 -13.226 -0.084 15.953 Atomic orbital electron populations 1.70108 1.07518 1.29069 1.24382 1.26272 0.95186 1.01903 0.93800 0.86088 0.79933 0.78866 0.80390 1.19806 1.18458 1.18444 1.19546 0.95206 0.87864 1.37450 0.88407 1.19964 0.86025 0.90885 0.88546 1.69365 1.08047 1.26775 1.18234 1.23108 0.99195 0.87878 0.88900 1.19671 0.95236 0.92884 1.27023 1.18464 0.90894 0.92597 0.90226 1.21117 0.99939 0.91556 1.06849 1.20697 0.93059 0.97777 0.97124 1.20931 0.95561 0.95759 1.14560 1.18711 0.79660 0.94689 0.97994 1.86022 1.18783 1.27016 1.89962 1.23689 0.87250 0.88350 1.06743 1.20079 0.90637 0.73996 0.74333 1.93238 1.92864 1.78422 1.50942 1.93214 1.84192 1.41937 1.96324 1.93239 1.92844 1.78906 1.50488 1.20376 0.93284 0.95728 1.09587 1.22698 0.90403 0.95883 0.89175 1.68667 1.40726 0.98454 1.23264 0.90681 0.84933 0.86009 0.86327 0.86516 0.87563 0.87554 0.85225 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.22 11.40 55.56 0.63 -16.58 16 2 C 0.06 1.38 5.50 -17.34 -0.10 1.28 16 3 Si 0.92 17.35 29.56 -169.99 -5.02 12.32 16 4 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 5 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.37 -9.55 9.35 -37.79 -0.35 -9.90 16 8 H 0.10 2.40 7.85 -52.49 -0.41 1.99 16 9 C 0.38 10.21 7.35 -158.17 -1.16 9.05 16 10 N -0.51 -13.55 7.83 -12.41 -0.10 -13.65 16 11 C 0.19 4.34 10.70 -16.83 -0.18 4.16 16 12 C -0.34 -7.20 5.94 -104.28 -0.62 -7.82 16 13 C 0.08 1.44 5.88 -104.89 -0.62 0.83 16 14 C -0.18 -2.70 9.45 -39.15 -0.37 -3.07 16 15 C -0.07 -0.89 10.03 -39.66 -0.40 -1.28 16 16 C -0.25 -3.14 9.04 -39.30 -0.36 -3.49 16 17 C 0.13 1.95 6.68 -39.26 -0.26 1.69 16 18 O -0.30 -4.08 10.02 -19.41 -0.19 -4.27 16 19 C 0.02 0.16 4.70 37.16 0.17 0.33 16 20 C 0.46 4.58 3.32 37.16 0.12 4.71 16 21 F -0.17 -1.99 17.26 2.25 0.04 -1.95 16 22 F -0.18 -1.57 17.32 2.25 0.04 -1.53 16 23 F -0.17 -1.99 17.26 2.25 0.04 -1.95 16 24 C -0.17 -2.89 9.39 -39.02 -0.37 -3.26 16 25 C 0.19 4.26 10.70 -16.83 -0.18 4.08 16 26 N -0.59 -15.06 10.34 -12.41 -0.13 -15.19 16 27 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 28 H 0.13 2.74 6.33 -52.49 -0.33 2.41 16 29 H 0.12 1.72 6.28 -52.48 -0.33 1.39 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.09 6.28 -52.49 -0.33 0.76 16 32 H 0.11 0.75 7.66 -51.92 -0.40 0.35 16 33 H 0.11 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.13 2.20 6.29 -52.49 -0.33 1.87 16 35 H 0.13 2.42 6.33 -52.49 -0.33 2.09 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -29.22 321.34 -6.93 -36.16 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.42 Total: 4.51 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.66 Total: -2.70 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.41 Total: -45.42 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.19 Total: -4.27 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.12 Total: -5.43 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.02 Total: 12.32 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.22 -6.93 -36.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243391122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.806 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds