Wall clock time and date at job start Tue Mar 31 2020 14:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00142 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99967 * 3 2 1 7 7 C 1.40139 * 119.99880 * 180.27356 * 2 1 3 8 8 H 1.08002 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.41082 * 120.00205 * 0.02562 * 7 2 1 10 10 N 1.33640 * 119.13469 * 359.72790 * 9 7 2 11 11 C 1.31594 * 120.83129 * 179.71447 * 10 9 7 12 12 C 1.40423 * 119.09133 * 0.55021 * 11 10 9 13 13 C 1.47944 * 120.78989 * 179.70367 * 12 11 10 14 14 C 1.39697 * 120.11929 * 179.74447 * 13 12 11 15 15 C 1.37929 * 119.96226 * 179.74012 * 14 13 12 16 16 C 1.38336 * 120.20244 * 0.54170 * 15 14 13 17 17 C 1.38889 * 120.24404 * 359.71246 * 16 15 14 18 18 O 1.35896 * 119.98471 * 180.02562 * 17 16 15 19 19 C 1.42897 * 117.00119 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47379 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47622 * 59.99623 * 20 19 18 22 22 F 1.39905 * 109.47273 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.47017 * 299.99763 * 20 19 18 24 24 C 1.38446 * 120.03232 * 0.02572 * 17 16 15 25 25 C 1.40425 * 118.42033 * 359.72426 * 12 11 10 26 26 N 1.31592 * 119.09375 * 0.02562 * 25 12 11 27 27 H 0.97005 * 120.00023 * 359.72375 * 1 2 3 28 28 H 1.07995 * 120.45356 * 180.25521 * 11 10 9 29 29 H 1.08007 * 120.02384 * 0.02562 * 14 13 12 30 30 H 1.07997 * 119.90337 * 180.25384 * 15 14 13 31 31 H 1.07998 * 119.88297 * 179.74227 * 16 15 14 32 32 H 1.09010 * 109.47221 * 300.00381 * 19 18 17 33 33 H 1.08999 * 109.47188 * 60.00018 * 19 18 17 34 34 H 1.08001 * 120.09981 * 179.97438 * 24 17 16 35 35 H 1.07997 * 120.45549 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0073 -1.2136 -0.0058 8 1 3.0873 -1.2136 -0.0062 9 6 1.3019 -2.4354 -0.0122 10 7 -0.0343 -2.4153 -0.0070 11 6 -0.7257 -3.5349 -0.0184 12 6 -0.0404 -4.7605 -0.0242 13 6 -0.7801 -6.0418 -0.0304 14 6 -0.0842 -7.2530 -0.0415 15 6 -0.7770 -8.4456 -0.0418 16 6 -2.1604 -8.4468 -0.0423 17 6 -2.8610 -7.2475 -0.0366 18 8 -4.2199 -7.2548 -0.0366 19 6 -4.8618 -8.5315 -0.0422 20 6 -6.3797 -8.3392 -0.0420 21 9 -6.7591 -7.6215 -1.1814 22 9 -7.0081 -9.5891 -0.0468 23 9 -6.7599 -7.6311 1.1032 24 6 -2.1755 -6.0447 -0.0308 25 6 1.3637 -4.7412 -0.0237 26 7 1.9876 -3.5826 -0.0172 27 1 -0.4850 0.8401 0.0041 28 1 -1.8054 -3.5115 -0.0183 29 1 0.9959 -7.2556 -0.0453 30 1 -0.2380 -9.3814 -0.0463 31 1 -2.6977 -9.3836 -0.0468 32 1 -4.5659 -9.0831 -0.9346 33 1 -4.5660 -9.0908 0.8454 34 1 -2.7192 -5.1115 -0.0268 35 1 1.9239 -5.6645 -0.0285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243391122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:33 Heat of formation + Delta-G solvation = -138.360908 kcal Electronic energy + Delta-G solvation = -25546.558858 eV Core-core repulsion = 21094.231908 eV Total energy + Delta-G solvation = -4452.326950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.19449 -48.73540 -48.68339 -41.32523 -40.69040 -38.47534 -35.83519 -33.97047 -33.44211 -32.19481 -30.64026 -30.03969 -27.88584 -25.16648 -24.99573 -24.08034 -22.82668 -22.10255 -19.98499 -19.76087 -19.72382 -18.91173 -18.67639 -17.91778 -17.37011 -16.87296 -16.75666 -16.27433 -16.00903 -15.56129 -15.50637 -15.39209 -15.11633 -15.05757 -14.84813 -14.83016 -14.60500 -14.46890 -14.28461 -13.81740 -13.71331 -13.18605 -12.96579 -12.94970 -12.73552 -12.48041 -12.32002 -12.00034 -11.89141 -11.39990 -11.22455 -11.06678 -10.56304 -9.38415 -9.34109 -8.98089 -8.52754 -6.77288 -0.06663 0.55184 0.98901 1.11037 1.22289 1.38729 1.53760 1.55005 2.03169 2.16028 2.62999 2.67129 2.89857 3.03094 3.29377 3.82831 3.87978 3.88351 3.92321 3.97443 4.01380 4.06204 4.30479 4.34161 4.45404 4.48842 4.64193 4.93368 5.06423 5.15714 5.24318 5.32216 5.55216 5.64572 5.84807 5.89552 6.06208 6.33439 6.42721 6.50508 7.09135 8.11930 8.25841 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.020136 B = 0.002511 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.223825 B =11149.729127 C =12360.153785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.018 3.982 3 Si 1.004 2.996 4 H -0.262 1.262 5 H -0.255 1.255 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.097 0.903 9 C 0.351 3.649 10 N -0.542 5.542 11 C 0.162 3.838 12 C -0.320 4.320 13 C 0.046 3.954 14 C -0.176 4.176 15 C -0.062 4.062 16 C -0.225 4.225 17 C 0.130 3.870 18 O -0.324 6.324 19 C 0.011 3.989 20 C 0.465 3.535 21 F -0.186 7.186 22 F -0.167 7.167 23 F -0.186 7.186 24 C -0.187 4.187 25 C 0.180 3.820 26 N -0.618 5.618 27 H 0.289 0.711 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 -17.418 -0.109 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.207 4.207 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.179 1.179 6 H -0.179 1.179 7 C -0.447 4.447 8 H 0.115 0.885 9 C 0.117 3.883 10 N -0.259 5.259 11 C -0.013 4.013 12 C -0.329 4.329 13 C 0.044 3.956 14 C -0.195 4.195 15 C -0.079 4.079 16 C -0.243 4.243 17 C 0.086 3.914 18 O -0.239 6.239 19 C -0.065 4.065 20 C 0.410 3.590 21 F -0.168 7.168 22 F -0.149 7.149 23 F -0.168 7.168 24 C -0.206 4.206 25 C 0.007 3.993 26 N -0.337 5.337 27 H 0.100 0.900 28 H 0.163 0.837 29 H 0.151 0.849 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.744 -16.083 -0.098 18.307 hybrid contribution -0.700 -0.001 -0.003 0.700 sum -9.444 -16.084 -0.101 18.653 Atomic orbital electron populations 1.70181 1.09163 1.30368 1.25792 1.27223 0.95954 1.05014 0.92471 0.84937 0.78484 0.73925 0.80457 1.18552 1.17930 1.17934 1.19829 0.95397 0.88921 1.40543 0.88510 1.20376 0.86553 0.91959 0.89388 1.69318 1.08304 1.28405 1.19836 1.23485 0.99980 0.88410 0.89386 1.19975 0.95349 0.93935 1.23670 1.18358 0.91328 0.92032 0.93840 1.21348 1.00727 0.91432 1.05962 1.21167 0.93391 0.98319 0.95066 1.21478 0.95712 0.96551 1.10594 1.18697 0.80428 0.94564 0.97732 1.85978 1.18185 1.29900 1.89833 1.24067 0.85926 0.86925 1.09596 1.20245 0.91331 0.73892 0.73495 1.93217 1.93083 1.78859 1.51613 1.93232 1.84164 1.41230 1.96236 1.93218 1.93064 1.79334 1.51169 1.20378 0.93253 0.96634 1.10299 1.23322 0.91151 0.96249 0.88589 1.68681 1.41306 0.99134 1.24574 0.90026 0.83673 0.84909 0.82152 0.82032 0.84626 0.84621 0.86824 0.81138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.54 11.40 21.85 0.25 -38.29 16 2 C 0.02 0.91 5.50 85.33 0.47 1.38 16 3 Si 1.00 36.66 29.56 68.60 2.03 38.69 16 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 5 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 6 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.41 -22.72 9.35 23.43 0.22 -22.50 16 8 H 0.10 5.06 7.85 -2.91 -0.02 5.03 16 9 C 0.35 20.11 7.35 134.91 0.99 21.10 16 10 N -0.54 -30.68 7.83 -193.19 -1.51 -32.19 16 11 C 0.16 7.97 10.70 85.26 0.91 8.89 16 12 C -0.32 -13.94 5.94 -19.64 -0.12 -14.05 16 13 C 0.05 1.62 5.88 -20.04 -0.12 1.51 16 14 C -0.18 -4.86 9.45 22.55 0.21 -4.65 16 15 C -0.06 -1.26 10.03 22.22 0.22 -1.04 16 16 C -0.22 -4.41 9.04 22.45 0.20 -4.20 16 17 C 0.13 3.42 6.68 22.48 0.15 3.57 16 18 O -0.32 -7.85 10.02 -92.38 -0.93 -8.78 16 19 C 0.01 0.16 4.70 71.98 0.34 0.50 16 20 C 0.46 8.03 3.32 71.98 0.24 8.26 16 21 F -0.19 -4.00 17.26 44.97 0.78 -3.22 16 22 F -0.17 -2.50 17.32 44.97 0.78 -1.72 16 23 F -0.19 -4.00 17.26 44.97 0.78 -3.22 16 24 C -0.19 -6.21 9.39 22.63 0.21 -6.00 16 25 C 0.18 8.03 10.70 85.26 0.91 8.94 16 26 N -0.62 -32.70 10.34 -193.18 -2.00 -34.70 16 27 H 0.29 13.47 8.29 -92.70 -0.77 12.70 16 28 H 0.15 6.44 6.33 -2.91 -0.02 6.42 16 29 H 0.13 3.30 6.28 -2.91 -0.02 3.28 16 30 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.16 1.75 6.28 -2.91 -0.02 1.73 16 32 H 0.14 1.15 7.66 -2.38 -0.02 1.13 16 33 H 0.14 1.15 7.66 -2.39 -0.02 1.13 16 34 H 0.11 4.02 6.29 -2.91 -0.02 4.00 16 35 H 0.17 6.02 6.33 -2.91 -0.02 6.00 16 Total: -1.00 -69.27 321.34 6.20 -63.07 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.18 Total: 18.66 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.85 Total: 1.71 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.26 Total: -105.18 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.93 Total: -8.78 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 2.33 Total: -8.17 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -69.27 6.20 -63.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243391122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.294 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds