Wall clock time and date at job start Tue Mar 31 2020 13:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36015 * 117.00356 * 2 1 4 4 C 1.38941 * 120.00565 * 89.99950 * 3 2 1 5 5 F 1.35098 * 119.90814 * 359.95086 * 4 3 2 6 6 C 1.38454 * 120.18496 * 179.97438 * 4 3 2 7 7 C 1.38037 * 120.19569 * 0.26847 * 6 4 3 8 8 C 1.39396 * 120.00954 * 359.45281 * 7 6 4 9 9 C 1.48270 * 120.09306 * 180.29313 * 8 7 6 10 10 C 1.39296 * 120.13314 * 65.25370 * 9 8 7 11 11 C 1.37985 * 119.96590 * 179.97438 * 10 9 8 12 12 C 1.38670 * 120.24455 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.86034 * 180.02562 * 12 11 10 14 14 C 1.38334 * 120.27522 * 0.04774 * 12 11 10 15 15 C 1.38704 * 120.02547 * 359.69472 * 14 12 11 16 16 O 1.35669 * 120.12118 * 180.28408 * 15 14 12 17 17 C 1.34819 * 117.00096 * 354.41391 * 16 15 14 18 18 H 1.07993 * 119.99709 * 5.15531 * 17 16 15 19 19 C 1.38636 * 119.99809 * 185.15817 * 17 16 15 20 20 N 1.31566 * 119.99569 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00304 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46626 * 90.00396 * 21 19 17 23 23 H 1.48501 * 109.47054 * 210.00244 * 21 19 17 24 24 H 1.48497 * 109.47185 * 330.00817 * 21 19 17 25 25 C 1.38593 * 120.00749 * 269.97499 * 3 2 1 26 26 F 1.35102 * 120.09281 * 0.04615 * 25 3 2 27 27 H 1.09002 * 109.46931 * 60.00428 * 1 2 3 28 28 H 1.09000 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46951 * 300.00573 * 1 2 3 30 30 H 1.07992 * 119.90245 * 179.97438 * 6 4 3 31 31 H 1.08003 * 119.99445 * 179.72790 * 7 6 4 32 32 H 1.08004 * 120.02166 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.87494 * 180.02562 * 11 10 9 34 34 H 1.07998 * 119.98936 * 179.97438 * 14 12 11 35 35 H 0.97007 * 119.99892 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 2.3620 1.8309 1.2032 5 9 2.0536 1.2280 2.3722 6 6 2.9911 3.0643 1.2075 7 6 3.3036 3.6885 0.0167 8 6 2.9960 3.0721 -1.1952 9 6 3.3367 3.7379 -2.4755 10 6 4.6695 3.9475 -2.8217 11 6 4.9826 4.5670 -4.0142 12 6 3.9747 4.9822 -4.8713 13 9 4.2901 5.5876 -6.0373 14 6 2.6477 4.7796 -4.5373 15 6 2.3202 4.1532 -3.3439 16 8 1.0195 3.9483 -3.0170 17 6 0.0912 4.4791 -3.8380 18 1 0.3946 4.9657 -4.7531 19 6 -1.2529 4.4002 -3.5074 20 7 -2.1588 4.9178 -4.3088 21 14 -1.7777 3.5579 -1.9248 22 1 -1.8208 4.5544 -0.8246 23 1 -3.1254 2.9609 -2.1052 24 1 -0.8039 2.4890 -1.5866 25 6 2.3617 1.8292 -1.2002 26 9 2.0556 1.2293 -2.3714 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.2339 3.5415 2.1454 31 1 3.7904 4.6526 0.0238 32 1 5.4576 3.6245 -2.1575 33 1 6.0165 4.7284 -4.2814 34 1 1.8664 5.1051 -5.2081 35 1 -3.0994 4.8623 -4.0777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243508752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:57 Heat of formation + Delta-G solvation = -158.537853 kcal Electronic energy + Delta-G solvation = -27561.916990 eV Core-core repulsion = 23076.422351 eV Total energy + Delta-G solvation = -4485.494639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.08476 -50.01337 -49.92379 -41.23510 -40.43593 -38.80616 -37.92100 -34.56905 -33.16947 -31.45322 -31.18404 -29.49815 -28.04294 -27.37424 -24.68890 -24.01935 -23.33243 -22.53729 -20.12179 -19.68754 -19.30967 -18.73285 -18.63388 -17.63322 -17.33667 -17.08179 -16.94669 -16.68011 -16.56648 -16.36201 -16.03015 -15.95299 -15.74080 -15.56982 -15.37870 -15.23620 -15.01685 -14.35694 -14.26581 -13.93201 -13.73944 -13.37394 -13.15631 -12.89573 -12.76317 -12.62741 -12.40955 -12.34567 -12.15879 -11.63629 -11.27129 -10.99623 -10.04856 -9.90324 -9.64238 -9.14844 -8.60096 -6.32838 -0.36765 -0.20814 0.21351 0.44417 1.20565 1.24433 1.38953 2.01713 2.16456 2.48942 2.54251 2.72875 2.83351 2.93353 3.26871 3.33571 3.48136 3.72322 3.91366 3.95023 4.16056 4.18979 4.23923 4.32740 4.35881 4.54111 4.61618 4.71227 4.79413 4.91677 5.05922 5.11510 5.18999 5.21190 5.32347 5.46124 5.60385 5.75765 6.01934 6.13198 6.73298 7.41526 8.51061 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.006632 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.009394 B = 4220.949380 C = 6097.754773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.336 6.336 3 C 0.002 3.998 4 C 0.097 3.903 5 F -0.127 7.127 6 C -0.131 4.131 7 C -0.043 4.043 8 C -0.061 4.061 9 C -0.144 4.144 10 C -0.010 4.010 11 C -0.209 4.209 12 C 0.139 3.861 13 F -0.146 7.146 14 C -0.281 4.281 15 C 0.172 3.828 16 O -0.217 6.217 17 C -0.400 4.400 18 H 0.083 0.917 19 C 0.022 3.978 20 N -0.914 5.914 21 Si 0.951 3.049 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.260 1.260 25 C 0.102 3.898 26 F -0.137 7.137 27 H 0.031 0.969 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.169 0.831 34 H 0.118 0.882 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 -3.802 12.487 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.253 6.253 3 C -0.044 4.044 4 C 0.077 3.923 5 F -0.106 7.106 6 C -0.149 4.149 7 C -0.061 4.061 8 C -0.062 4.062 9 C -0.145 4.145 10 C -0.028 4.028 11 C -0.228 4.228 12 C 0.120 3.880 13 F -0.125 7.125 14 C -0.301 4.301 15 C 0.121 3.879 16 O -0.123 6.123 17 C -0.476 4.476 18 H 0.100 0.900 19 C -0.178 4.178 20 N -0.554 5.554 21 Si 0.774 3.226 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.184 1.184 25 C 0.082 3.918 26 F -0.116 7.116 27 H 0.050 0.950 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.209 0.791 31 H 0.203 0.797 32 H 0.199 0.801 33 H 0.187 0.813 34 H 0.136 0.864 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.409 -4.091 12.570 18.130 hybrid contribution -1.466 -0.188 -0.848 1.704 sum 10.943 -4.279 11.722 16.597 Atomic orbital electron populations 1.23383 0.77500 1.05503 1.00772 1.86061 1.21508 1.23496 1.94231 1.18719 1.04609 0.89927 0.91095 1.17933 1.01576 0.93194 0.79550 1.91498 1.91071 1.83269 1.44716 1.21475 0.99471 0.92274 1.01699 1.21460 0.96347 1.00291 0.87985 1.18759 1.00714 0.91697 0.95037 1.17931 0.92364 1.09564 0.94642 1.21107 0.93366 0.92987 0.95329 1.21074 0.99412 1.06621 0.95664 1.17730 0.92794 0.94993 0.82468 1.91447 1.93538 1.80975 1.46523 1.21069 0.96428 1.11850 1.00739 1.19211 0.84435 0.92350 0.91917 1.83546 1.11881 1.67495 1.49365 1.20689 0.86541 1.36903 1.03494 0.89987 1.25148 0.94112 0.96898 1.01669 1.69720 1.02315 1.44659 1.38677 0.85515 0.78234 0.79793 0.79087 1.18453 1.19113 1.18403 1.18245 1.00556 0.92575 0.80465 1.91478 1.90920 1.83060 1.46110 0.95023 0.85233 0.92252 0.79144 0.79687 0.80121 0.81317 0.86381 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.13 113.37 1.26 1.90 16 2 O -0.34 -11.42 10.14 -93.72 -0.95 -12.37 16 3 C 0.00 0.07 5.73 22.52 0.13 0.20 16 4 C 0.10 2.63 7.31 22.49 0.16 2.79 16 5 F -0.13 -3.34 17.10 44.97 0.77 -2.57 16 6 C -0.13 -2.61 10.00 22.27 0.22 -2.39 16 7 C -0.04 -0.95 9.73 22.50 0.22 -0.73 16 8 C -0.06 -1.93 4.95 -20.02 -0.10 -2.03 16 9 C -0.14 -4.92 5.02 -19.93 -0.10 -5.02 16 10 C -0.01 -0.26 9.73 22.46 0.22 -0.04 16 11 C -0.21 -5.58 10.01 22.31 0.22 -5.35 16 12 C 0.14 4.94 7.29 22.40 0.16 5.11 16 13 F -0.15 -5.13 17.26 44.97 0.78 -4.36 16 14 C -0.28 -12.20 9.14 22.40 0.20 -11.99 16 15 C 0.17 7.60 6.43 22.81 0.15 7.75 16 16 O -0.22 -11.19 7.74 -21.73 -0.17 -11.36 16 17 C -0.40 -22.89 9.94 67.91 0.68 -22.22 16 18 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 19 C 0.02 1.23 5.49 84.83 0.47 1.69 16 20 N -0.91 -53.63 13.96 21.61 0.30 -53.33 16 21 Si 0.95 44.02 28.62 68.60 1.96 45.98 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.26 -12.01 6.13 99.48 0.61 -11.40 16 25 C 0.10 3.73 6.95 22.67 0.16 3.89 16 26 F -0.14 -5.92 16.46 44.97 0.74 -5.18 16 27 H 0.03 1.07 7.16 -2.39 -0.02 1.05 16 28 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.12 5.77 5.64 -2.91 -0.02 5.76 16 35 H 0.29 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -69.68 325.55 8.56 -61.12 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.07 Total: 8.50 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.05 Total: -26.44 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.30 Total: -53.33 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.12 Total: -23.73 kcal Atomic # 9 Polarization: -14.40 SS G_CDS: 2.29 Total: -12.11 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.96 Total: 45.98 kcal Total: -69.68 8.56 -61.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243508752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.414 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds