Wall clock time and date at job start Tue Mar 31 2020 14:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.01035 * 3 2 1 6 6 H 1.48507 * 109.46820 * 60.00366 * 3 2 1 7 7 C 1.38649 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99703 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.35651 * 116.99955 * 174.92867 * 9 7 2 11 11 C 1.38761 * 120.14143 * 5.71997 * 10 9 7 12 12 C 1.38107 * 120.05520 * 180.25722 * 11 10 9 13 13 C 1.38457 * 120.34440 * 359.75071 * 12 11 10 14 14 C 1.37990 * 120.27981 * 359.97417 * 13 12 11 15 15 C 1.39362 * 119.93571 * 0.02562 * 14 13 12 16 16 C 1.48119 * 120.16835 * 179.97438 * 15 14 13 17 17 N 1.32690 * 119.78893 * 129.47594 * 16 15 14 18 18 C 1.31735 * 121.68285 * 179.97438 * 17 16 15 19 19 C 1.38346 * 121.06875 * 0.02562 * 18 17 16 20 20 C 1.50693 * 120.27093 * 179.97438 * 19 18 17 21 21 F 1.39892 * 109.47446 * 359.97438 * 20 19 18 22 22 F 1.39907 * 109.47267 * 120.00236 * 20 19 18 23 23 F 1.39905 * 109.47363 * 239.99757 * 20 19 18 24 24 C 1.38604 * 119.45810 * 0.27261 * 19 18 17 25 25 C 1.39133 * 118.45431 * 359.44109 * 24 19 18 26 26 N 1.39487 * 120.54871 * 180.30650 * 25 24 19 27 27 H 0.97002 * 120.00104 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.97105 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.82428 * 179.76558 * 12 11 10 30 30 H 1.08002 * 119.86222 * 180.02562 * 13 12 11 31 31 H 1.08001 * 120.02754 * 180.02562 * 14 13 12 32 32 H 1.07998 * 119.46757 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.77714 * 179.70905 * 24 19 18 34 34 H 0.96996 * 120.00531 * 184.96944 * 26 25 24 35 35 H 0.97003 * 119.99601 * 4.95779 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3966 -1.2123 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3682 -0.0005 10 6 2.0694 -3.5035 -0.1079 11 6 3.4555 -3.4406 -0.0921 12 6 4.2017 -4.5970 -0.2069 13 6 3.5742 -5.8247 -0.3330 14 6 2.1967 -5.9041 -0.3447 15 6 1.4322 -4.7446 -0.2297 16 6 -0.0468 -4.8238 -0.2421 17 7 -0.7473 -4.2212 0.7102 18 6 -2.0636 -4.2671 0.7350 19 6 -2.7727 -4.9502 -0.2369 20 6 -4.2783 -4.9915 -0.1907 21 9 -4.7307 -4.2718 0.9203 22 9 -4.7965 -4.4217 -1.3587 23 9 -4.7056 -6.3199 -0.0907 24 6 -2.0866 -5.6016 -1.2499 25 6 -0.6969 -5.5342 -1.2591 26 7 0.0370 -6.1681 -2.2616 27 1 -0.4850 0.8401 0.0004 28 1 3.9512 -2.4861 0.0063 29 1 5.2803 -4.5433 -0.1979 30 1 4.1654 -6.7242 -0.4219 31 1 1.7115 -6.8640 -0.4429 32 1 -2.5979 -3.7639 1.5273 33 1 -2.6185 -6.1451 -2.0168 34 1 1.0061 -6.1774 -2.2212 35 1 -0.4218 -6.5999 -2.9992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584182.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:29 Heat of formation + Delta-G solvation = -111.781167 kcal Electronic energy + Delta-G solvation = -26991.150777 eV Core-core repulsion = 22539.976411 eV Total energy + Delta-G solvation = -4451.174366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.99821 -47.51244 -47.46522 -40.21637 -38.78532 -36.52732 -34.94043 -33.05526 -32.33524 -30.32604 -29.23292 -28.49639 -25.84636 -25.39798 -23.37518 -22.41263 -21.54214 -20.82072 -18.41418 -18.33511 -18.28105 -18.05064 -17.36820 -16.95216 -15.95252 -15.62291 -14.95693 -14.71345 -14.70667 -14.39229 -14.12960 -14.07341 -13.90984 -13.79967 -13.66727 -13.62708 -13.45795 -13.39429 -12.80227 -12.67977 -12.47763 -11.92624 -11.74306 -11.43466 -11.11620 -10.97483 -10.87921 -10.82431 -10.48038 -9.59905 -9.48638 -9.07409 -8.91314 -8.33908 -7.58070 -7.12129 -6.50554 -4.08097 0.98532 1.73014 2.02521 2.26120 2.81943 3.09278 3.10197 3.15935 3.78313 3.90531 3.98923 4.00840 4.29644 4.42575 4.63477 4.75823 4.97586 5.08932 5.11689 5.16484 5.43927 5.51222 5.63017 5.71407 5.90280 6.02136 6.16470 6.22168 6.53703 6.61822 6.72849 6.96132 7.05493 7.23442 7.27583 7.49290 7.64968 7.84577 7.90968 8.47027 8.92874 9.62528 10.65247 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.004934 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.967986 B = 5673.351536 C = 7710.150334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.396 4.396 8 H 0.093 0.907 9 O -0.145 6.145 10 C 0.179 3.821 11 C -0.233 4.233 12 C -0.062 4.062 13 C -0.218 4.218 14 C -0.063 4.063 15 C -0.137 4.137 16 C 0.175 3.825 17 N -0.411 5.411 18 C 0.104 3.896 19 C -0.211 4.211 20 C 0.518 3.482 21 F -0.175 7.175 22 F -0.178 7.178 23 F -0.182 7.182 24 C -0.117 4.117 25 C 0.168 3.832 26 N -0.866 5.866 27 H 0.271 0.729 28 H 0.131 0.869 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.406 0.594 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -11.276 -3.203 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.472 4.472 8 H 0.111 0.889 9 O -0.045 6.045 10 C 0.122 3.878 11 C -0.252 4.252 12 C -0.080 4.080 13 C -0.237 4.237 14 C -0.083 4.083 15 C -0.139 4.139 16 C 0.032 3.968 17 N -0.117 5.117 18 C -0.056 4.056 19 C -0.215 4.215 20 C 0.463 3.537 21 F -0.157 7.157 22 F -0.160 7.160 23 F -0.163 7.163 24 C -0.147 4.147 25 C 0.061 3.939 26 N -0.408 5.408 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.239 0.761 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.118 -10.533 -2.482 11.027 hybrid contribution -0.083 0.311 -0.954 1.007 sum -2.201 -10.222 -3.436 11.007 Atomic orbital electron populations 1.70075 1.05925 1.27684 1.44111 1.25312 0.95828 0.98857 0.96285 0.85660 0.79171 0.80341 0.78332 1.19042 1.20135 1.20016 1.21444 0.91882 0.80897 1.52982 0.88929 1.84041 1.33924 1.11113 1.75426 1.19260 0.89880 0.87430 0.91251 1.21159 0.93427 0.99322 1.11302 1.20855 0.98659 0.92308 0.96197 1.20462 0.93800 0.97150 1.12321 1.20640 0.93668 0.95528 0.98421 1.17366 0.88827 0.91810 1.15919 1.19517 0.93392 0.93497 0.90438 1.67962 1.06712 1.14123 1.22885 1.22370 0.89949 0.96174 0.97075 1.20671 0.91126 1.07774 1.01961 1.18152 0.88586 0.73406 0.73578 1.93163 1.90687 1.78264 1.53549 1.93207 1.88749 1.84953 1.49074 1.93188 1.91633 1.35616 1.95870 1.20413 0.92175 1.02628 0.99496 1.18493 0.90663 0.94309 0.90454 1.42482 1.09533 1.62804 1.25973 0.91945 0.85172 0.87232 0.87204 0.86768 0.82176 0.84623 0.76131 0.77652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.33 13.67 55.48 0.76 -23.57 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.40 -10.76 9.49 30.88 0.29 -10.47 16 8 H 0.09 2.32 5.21 -52.48 -0.27 2.04 16 9 O -0.14 -4.01 8.78 0.42 0.00 -4.01 16 10 C 0.18 4.20 6.63 -38.71 -0.26 3.95 16 11 C -0.23 -4.81 9.16 -39.44 -0.36 -5.17 16 12 C -0.06 -1.04 10.03 -39.55 -0.40 -1.44 16 13 C -0.22 -3.41 10.03 -39.59 -0.40 -3.80 16 14 C -0.06 -1.05 7.69 -39.25 -0.30 -1.35 16 15 C -0.14 -2.79 5.24 -104.75 -0.55 -3.34 16 16 C 0.17 3.55 6.01 -82.76 -0.50 3.05 16 17 N -0.41 -9.03 9.74 -9.65 -0.09 -9.12 16 18 C 0.10 1.97 10.58 -17.55 -0.19 1.79 16 19 C -0.21 -3.48 5.38 -104.45 -0.56 -4.05 16 20 C 0.52 7.65 3.33 36.00 0.12 7.77 16 21 F -0.18 -2.62 15.98 2.25 0.04 -2.58 16 22 F -0.18 -2.69 17.25 2.25 0.04 -2.65 16 23 F -0.18 -2.50 17.24 2.25 0.04 -2.47 16 24 C -0.12 -1.78 9.62 -39.11 -0.38 -2.16 16 25 C 0.17 2.79 6.70 -83.36 -0.56 2.23 16 26 N -0.87 -11.04 8.72 32.64 0.28 -10.75 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.59 7.47 -52.49 -0.39 1.19 16 32 H 0.16 2.78 7.15 -52.49 -0.38 2.41 16 33 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.41 5.17 5.86 -40.82 -0.24 4.93 16 35 H 0.40 3.75 8.86 -40.82 -0.36 3.39 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -30.89 320.29 -5.60 -36.49 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -2.34 Total: 10.65 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -4.13 Total: -11.91 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.95 Total: -43.45 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.00 Total: -4.01 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.11 Total: -7.70 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.89 -5.60 -36.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584182.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.293 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds