Wall clock time and date at job start Tue Mar 31 2020 14:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.01035 * 3 2 1 6 6 H 1.48507 * 109.46820 * 60.00366 * 3 2 1 7 7 C 1.38649 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99703 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.35651 * 116.99955 * 174.92867 * 9 7 2 11 11 C 1.38761 * 120.14143 * 5.71997 * 10 9 7 12 12 C 1.38107 * 120.05520 * 180.25722 * 11 10 9 13 13 C 1.38457 * 120.34440 * 359.75071 * 12 11 10 14 14 C 1.37990 * 120.27981 * 359.97417 * 13 12 11 15 15 C 1.39362 * 119.93571 * 0.02562 * 14 13 12 16 16 C 1.48119 * 120.16835 * 179.97438 * 15 14 13 17 17 N 1.32690 * 119.78893 * 129.47594 * 16 15 14 18 18 C 1.31735 * 121.68285 * 179.97438 * 17 16 15 19 19 C 1.38346 * 121.06875 * 0.02562 * 18 17 16 20 20 C 1.50693 * 120.27093 * 179.97438 * 19 18 17 21 21 F 1.39892 * 109.47446 * 359.97438 * 20 19 18 22 22 F 1.39907 * 109.47267 * 120.00236 * 20 19 18 23 23 F 1.39905 * 109.47363 * 239.99757 * 20 19 18 24 24 C 1.38604 * 119.45810 * 0.27261 * 19 18 17 25 25 C 1.39133 * 118.45431 * 359.44109 * 24 19 18 26 26 N 1.39487 * 120.54871 * 180.30650 * 25 24 19 27 27 H 0.97002 * 120.00104 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.97105 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.82428 * 179.76558 * 12 11 10 30 30 H 1.08002 * 119.86222 * 180.02562 * 13 12 11 31 31 H 1.08001 * 120.02754 * 180.02562 * 14 13 12 32 32 H 1.07998 * 119.46757 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.77714 * 179.70905 * 24 19 18 34 34 H 0.96996 * 120.00531 * 184.96944 * 26 25 24 35 35 H 0.97003 * 119.99601 * 4.95779 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3966 -1.2123 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3682 -0.0005 10 6 2.0694 -3.5035 -0.1079 11 6 3.4555 -3.4406 -0.0921 12 6 4.2017 -4.5970 -0.2069 13 6 3.5742 -5.8247 -0.3330 14 6 2.1967 -5.9041 -0.3447 15 6 1.4322 -4.7446 -0.2297 16 6 -0.0468 -4.8238 -0.2421 17 7 -0.7473 -4.2212 0.7102 18 6 -2.0636 -4.2671 0.7350 19 6 -2.7727 -4.9502 -0.2369 20 6 -4.2783 -4.9915 -0.1907 21 9 -4.7307 -4.2718 0.9203 22 9 -4.7965 -4.4217 -1.3587 23 9 -4.7056 -6.3199 -0.0907 24 6 -2.0866 -5.6016 -1.2499 25 6 -0.6969 -5.5342 -1.2591 26 7 0.0370 -6.1681 -2.2616 27 1 -0.4850 0.8401 0.0004 28 1 3.9512 -2.4861 0.0063 29 1 5.2803 -4.5433 -0.1979 30 1 4.1654 -6.7242 -0.4219 31 1 1.7115 -6.8640 -0.4429 32 1 -2.5979 -3.7639 1.5273 33 1 -2.6185 -6.1451 -2.0168 34 1 1.0061 -6.1774 -2.2212 35 1 -0.4218 -6.5999 -2.9992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243584182.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:28 Heat of formation + Delta-G solvation = -132.066531 kcal Electronic energy + Delta-G solvation = -26992.030417 eV Core-core repulsion = 22539.976411 eV Total energy + Delta-G solvation = -4452.054005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.20274 -48.71851 -48.65475 -41.62977 -40.36087 -38.12410 -36.22262 -34.48330 -34.18690 -31.74201 -30.70641 -29.84475 -27.44744 -27.01219 -24.76803 -23.78592 -23.06136 -22.24761 -19.85267 -19.63143 -19.53165 -19.48518 -18.98421 -18.22670 -17.46185 -16.85652 -16.35054 -16.30157 -16.25589 -15.61268 -15.52740 -15.44694 -15.33907 -15.10434 -14.98385 -14.87539 -14.86979 -14.81447 -14.29240 -14.09200 -13.88693 -13.53153 -13.22183 -13.02142 -12.55698 -12.48142 -12.32130 -12.26339 -12.10380 -11.24497 -10.95503 -10.80047 -10.50357 -9.75990 -9.06726 -8.51681 -8.43437 -6.09798 -0.39034 0.38207 0.56702 0.77274 1.34242 1.42627 1.51802 1.57231 2.17108 2.54087 2.60043 2.77520 2.88186 3.10078 3.17895 3.39680 3.41525 3.51595 3.75777 3.83903 4.10212 4.19074 4.30045 4.36947 4.51790 4.67666 4.73505 4.88888 5.03591 5.13980 5.19560 5.36576 5.62078 5.68528 5.75658 6.02104 6.20526 6.30787 6.87139 6.99902 7.08393 7.83975 8.77889 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.004934 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.967986 B = 5673.351536 C = 7710.150334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.019 4.019 3 Si 1.014 2.986 4 H -0.250 1.250 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.200 6.200 10 C 0.137 3.863 11 C -0.250 4.250 12 C -0.059 4.059 13 C -0.187 4.187 14 C -0.059 4.059 15 C -0.142 4.142 16 C 0.133 3.867 17 N -0.455 5.455 18 C 0.075 3.925 19 C -0.203 4.203 20 C 0.528 3.472 21 F -0.177 7.177 22 F -0.177 7.177 23 F -0.170 7.170 24 C -0.111 4.111 25 C 0.179 3.821 26 N -0.846 5.846 27 H 0.269 0.731 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.409 0.591 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -14.373 -4.717 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.217 4.217 3 Si 0.834 3.166 4 H -0.173 1.173 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.104 6.104 10 C 0.084 3.916 11 C -0.269 4.269 12 C -0.077 4.077 13 C -0.205 4.205 14 C -0.078 4.078 15 C -0.144 4.144 16 C -0.010 4.010 17 N -0.162 5.162 18 C -0.084 4.084 19 C -0.207 4.207 20 C 0.473 3.527 21 F -0.159 7.159 22 F -0.158 7.158 23 F -0.152 7.152 24 C -0.141 4.141 25 C 0.069 3.931 26 N -0.389 5.389 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.166 0.834 30 H 0.177 0.823 31 H 0.166 0.834 32 H 0.177 0.823 33 H 0.194 0.806 34 H 0.242 0.758 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.531 -13.719 -4.033 14.309 hybrid contribution -0.463 0.824 -0.539 1.088 sum -0.993 -12.895 -4.573 13.718 Atomic orbital electron populations 1.70236 1.07899 1.28315 1.48034 1.26501 0.96735 1.02527 0.95978 0.84590 0.78403 0.75260 0.78337 1.17341 1.19574 1.19696 1.21874 0.92446 0.81766 1.53039 0.88207 1.84031 1.35122 1.11969 1.79296 1.19947 0.91317 0.87655 0.92666 1.21295 0.92759 1.00622 1.12262 1.21297 1.00469 0.91383 0.94561 1.21098 0.93667 0.98276 1.07487 1.21062 0.94207 0.95456 0.97108 1.17839 0.89725 0.91941 1.14916 1.19717 0.93584 0.95601 0.92075 1.67803 1.08220 1.15206 1.24958 1.22432 0.89564 0.97872 0.98575 1.20803 0.92144 1.06513 1.01253 1.17838 0.87569 0.73778 0.73529 1.93165 1.90583 1.78416 1.53709 1.93213 1.88599 1.85034 1.49000 1.93211 1.91405 1.34732 1.95820 1.20841 0.91802 1.01856 0.99578 1.18465 0.91329 0.93279 0.90044 1.42408 1.09616 1.61493 1.25371 0.92192 0.86371 0.83443 0.82275 0.83396 0.82301 0.80644 0.75845 0.75339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.67 21.61 0.30 -55.91 16 2 C -0.02 -1.07 5.49 84.83 0.47 -0.60 16 3 Si 1.01 43.30 29.55 68.60 2.03 45.32 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.41 -24.05 9.49 67.92 0.64 -23.41 16 8 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 9 O -0.20 -11.87 8.78 -21.41 -0.19 -12.06 16 10 C 0.14 6.69 6.63 22.83 0.15 6.84 16 11 C -0.25 -10.39 9.16 22.36 0.20 -10.19 16 12 C -0.06 -1.80 10.03 22.29 0.22 -1.58 16 13 C -0.19 -4.90 10.03 22.26 0.22 -4.68 16 14 C -0.06 -1.77 7.69 22.48 0.17 -1.60 16 15 C -0.14 -5.79 5.24 -19.95 -0.10 -5.90 16 16 C 0.13 5.49 6.01 42.08 0.25 5.75 16 17 N -0.45 -21.12 9.74 -184.43 -1.80 -22.92 16 18 C 0.08 3.00 10.58 84.73 0.90 3.90 16 19 C -0.20 -6.62 5.38 -19.75 -0.11 -6.73 16 20 C 0.53 15.04 3.33 71.23 0.24 15.28 16 21 F -0.18 -5.30 15.98 44.97 0.72 -4.58 16 22 F -0.18 -5.08 17.25 44.97 0.78 -4.31 16 23 F -0.17 -4.33 17.24 44.97 0.78 -3.56 16 24 C -0.11 -3.15 9.62 22.57 0.22 -2.94 16 25 C 0.18 5.65 6.70 38.58 0.26 5.91 16 26 N -0.85 -18.84 8.72 -50.64 -0.44 -19.28 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 29 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.15 3.40 7.47 -2.91 -0.02 3.38 16 32 H 0.16 6.01 7.15 -2.91 -0.02 5.99 16 33 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.41 8.97 5.86 -92.71 -0.54 8.43 16 35 H 0.41 6.16 8.86 -92.71 -0.82 5.33 16 Total: -1.00 -75.34 320.29 5.75 -69.59 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.16 Total: 27.63 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 3.74 Total: -19.94 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -1.94 Total: -98.10 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.19 Total: -12.06 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 2.27 Total: -12.45 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -75.34 5.75 -69.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584182.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.472 kcal (2) G-P(sol) polarization free energy of solvation -75.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds