Wall clock time and date at job start Tue Mar 31 2020 14:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47164 * 240.00645 * 3 2 1 5 5 H 1.48503 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46976 * 120.00395 * 3 2 1 7 7 C 1.38657 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00314 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00370 * 359.97438 * 7 2 1 10 10 C 1.35640 * 117.00392 * 185.21592 * 9 7 2 11 11 C 1.38773 * 120.13613 * 354.43922 * 10 9 7 12 12 C 1.38098 * 120.05055 * 180.02562 * 11 10 9 13 13 C 1.38461 * 120.33190 * 359.97258 * 12 11 10 14 14 C 1.37999 * 120.27332 * 0.02562 * 13 12 11 15 15 C 1.39322 * 119.94340 * 0.02562 * 14 13 12 16 16 C 1.48228 * 120.15865 * 180.02562 * 15 14 13 17 17 C 1.39124 * 119.70269 * 359.97438 * 16 15 14 18 18 C 1.39207 * 118.97052 * 179.97438 * 17 16 15 19 19 N 1.39208 * 120.81668 * 180.02562 * 18 17 16 20 20 C 1.39607 * 118.36388 * 359.97438 * 18 17 16 21 21 C 1.37933 * 119.28743 * 0.02562 * 20 18 17 22 22 C 1.50703 * 119.50569 * 179.97438 * 21 20 18 23 23 F 1.39901 * 109.47012 * 89.99899 * 22 21 20 24 24 F 1.39902 * 109.47064 * 210.00185 * 22 21 20 25 25 F 1.39905 * 109.47117 * 330.00182 * 22 21 20 26 26 N 1.31885 * 120.98562 * 359.74379 * 21 20 18 27 27 H 0.97000 * 119.99845 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97566 * 359.97039 * 11 10 9 29 29 H 1.07998 * 119.83247 * 179.69362 * 12 11 10 30 30 H 1.07999 * 119.86560 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.02473 * 179.97438 * 14 13 12 32 32 H 1.08008 * 120.51293 * 359.95278 * 17 16 15 33 33 H 0.96996 * 120.00208 * 0.02562 * 19 18 17 34 34 H 0.97001 * 119.99465 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.35743 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0692 -3.5035 0.1088 11 6 3.4555 -3.4401 0.0982 12 6 4.2015 -4.5970 0.2091 13 6 3.5735 -5.8248 0.3319 14 6 2.1958 -5.9035 0.3440 15 6 1.4320 -4.7438 0.2318 16 6 -0.0481 -4.8227 0.2448 17 6 -0.6714 -6.0603 0.3691 18 6 -2.0623 -6.1167 0.3801 19 7 -2.7257 -7.3343 0.5031 20 6 -2.7754 -4.9220 0.2659 21 6 -2.0859 -3.7334 0.1462 22 6 -2.8508 -2.4408 0.0220 23 9 -3.0823 -1.9117 1.2963 24 9 -2.1059 -1.5289 -0.7334 25 9 -4.0743 -2.6821 -0.6121 26 7 -0.7672 -3.7107 0.1433 27 1 -0.4850 0.8401 0.0004 28 1 3.9513 -2.4855 0.0023 29 1 5.2801 -4.5441 0.1954 30 1 4.1643 -6.7248 0.4177 31 1 1.7102 -6.8634 0.4395 32 1 -0.0852 -6.9633 0.4553 33 1 -2.2184 -8.1572 0.5828 34 1 -3.6953 -7.3598 0.5098 35 1 -3.8554 -4.9283 0.2712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:32 Heat of formation + Delta-G solvation = -99.849813 kcal Electronic energy + Delta-G solvation = -27685.627845 eV Core-core repulsion = 23234.970861 eV Total energy + Delta-G solvation = -4450.656984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.30552 -46.95725 -46.50946 -40.00599 -38.70726 -36.34124 -35.24977 -32.58994 -32.21365 -29.65773 -29.33367 -28.59757 -25.96066 -25.20220 -23.54100 -22.08698 -21.01101 -20.64282 -18.05481 -17.95206 -17.86001 -17.63584 -16.82559 -16.81299 -15.74832 -15.38732 -14.83475 -14.63134 -14.43175 -14.07257 -14.02771 -13.74484 -13.53510 -13.42049 -13.28626 -13.21105 -12.97599 -12.77386 -12.62127 -12.42723 -12.03660 -11.62410 -11.54718 -11.27553 -11.19758 -10.83997 -10.77082 -10.64998 -10.41993 -9.39337 -9.33343 -8.77042 -8.70186 -7.95569 -7.82714 -7.07059 -6.34471 -3.91128 1.06091 1.73393 2.38107 2.45261 3.17461 3.18875 3.20768 3.21134 3.75353 4.00200 4.10356 4.35021 4.67994 4.71581 5.10262 5.14554 5.21337 5.25292 5.31309 5.43863 5.52972 5.66132 5.80425 5.85767 6.01065 6.12948 6.17175 6.34716 6.63978 6.70960 6.88228 7.09175 7.22226 7.33918 7.36127 7.41679 7.65625 7.79755 8.01705 8.59122 9.04052 9.76625 10.76184 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.007172 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.874401 B = 3903.314017 C = 6648.109415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.048 3.952 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.402 4.402 8 H 0.089 0.911 9 O -0.110 6.110 10 C 0.175 3.825 11 C -0.239 4.239 12 C -0.057 4.057 13 C -0.230 4.230 14 C -0.042 4.042 15 C -0.155 4.155 16 C 0.240 3.760 17 C -0.240 4.240 18 C 0.248 3.752 19 N -0.868 5.868 20 C -0.236 4.236 21 C 0.097 3.903 22 C 0.516 3.484 23 F -0.178 7.178 24 F -0.127 7.127 25 F -0.192 7.192 26 N -0.430 5.430 27 H 0.270 0.730 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.400 0.600 34 H 0.399 0.601 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -11.272 0.726 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.161 4.161 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.478 4.478 8 H 0.107 0.893 9 O -0.007 6.007 10 C 0.115 3.885 11 C -0.258 4.258 12 C -0.076 4.076 13 C -0.250 4.250 14 C -0.061 4.061 15 C -0.158 4.158 16 C 0.106 3.894 17 C -0.266 4.266 18 C 0.137 3.863 19 N -0.408 5.408 20 C -0.263 4.263 21 C -0.046 4.046 22 C 0.460 3.540 23 F -0.159 7.159 24 F -0.108 7.108 25 F -0.173 7.173 26 N -0.140 5.140 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.228 0.772 34 H 0.228 0.772 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.903 -10.102 0.612 10.847 hybrid contribution -0.179 -0.158 0.128 0.271 sum -4.082 -10.260 0.740 11.067 Atomic orbital electron populations 1.70130 1.05440 1.27481 1.41368 1.25279 0.95815 0.98520 0.96474 0.85899 0.78858 0.80283 0.79048 1.19632 1.20301 1.19645 1.21400 0.91764 0.81390 1.53248 0.89324 1.84244 1.32980 1.10622 1.72820 1.19319 0.89826 0.87778 0.91580 1.21148 0.93594 0.99159 1.11913 1.20851 0.98503 0.92409 0.95797 1.20423 0.93909 0.97045 1.13584 1.20655 0.93526 0.95658 0.96292 1.17454 0.88764 0.91874 1.17695 1.19431 0.92957 0.86626 0.90421 1.21539 0.92392 0.99573 1.13056 1.17570 0.91304 0.86164 0.91297 1.42229 1.09124 1.05371 1.84117 1.21042 1.00573 0.91397 1.13250 1.20640 0.91974 0.91511 1.00431 1.17985 0.76403 0.84965 0.74629 1.93177 1.94638 1.87811 1.40303 1.93454 1.74970 1.67314 1.75049 1.93118 1.46812 1.94679 1.82720 1.67686 1.04103 1.29974 1.12283 0.92027 0.85315 0.87446 0.87441 0.86847 0.84813 0.77152 0.77247 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.94 12.18 55.48 0.68 -22.26 16 2 C 0.05 1.29 5.49 -17.52 -0.10 1.20 16 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.40 -10.98 9.49 30.89 0.29 -10.69 16 8 H 0.09 2.24 5.21 -52.49 -0.27 1.97 16 9 O -0.11 -3.05 7.59 0.44 0.00 -3.05 16 10 C 0.17 4.23 6.65 -38.73 -0.26 3.97 16 11 C -0.24 -5.13 9.16 -39.44 -0.36 -5.49 16 12 C -0.06 -1.02 10.03 -39.55 -0.40 -1.42 16 13 C -0.23 -3.85 10.03 -39.59 -0.40 -4.25 16 14 C -0.04 -0.74 9.41 -39.27 -0.37 -1.11 16 15 C -0.16 -3.33 5.89 -104.73 -0.62 -3.94 16 16 C 0.24 5.04 6.73 -83.01 -0.56 4.48 16 17 C -0.24 -3.92 9.34 -38.89 -0.36 -4.28 16 18 C 0.25 3.62 6.81 -83.64 -0.57 3.05 16 19 N -0.87 -8.27 9.08 32.51 0.30 -7.97 16 20 C -0.24 -3.89 9.31 -39.18 -0.36 -4.26 16 21 C 0.10 2.01 6.29 -82.68 -0.52 1.49 16 22 C 0.52 10.84 3.43 36.01 0.12 10.96 16 23 F -0.18 -3.81 17.30 2.25 0.04 -3.77 16 24 F -0.13 -3.13 15.53 2.25 0.03 -3.10 16 25 F -0.19 -3.46 16.43 2.25 0.04 -3.42 16 26 N -0.43 -10.13 7.75 -6.14 -0.05 -10.18 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.59 6.18 -52.49 -0.32 1.26 16 32 H 0.13 1.76 6.19 -52.48 -0.32 1.43 16 33 H 0.40 2.91 8.86 -40.82 -0.36 2.55 16 34 H 0.40 2.97 8.86 -40.82 -0.36 2.61 16 35 H 0.13 1.82 7.58 -52.49 -0.40 1.43 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -31.53 317.73 -5.97 -37.50 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.32 Total: 6.46 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -4.45 Total: -10.28 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.92 Total: -40.41 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: 0.00 Total: -3.05 kcal Atomic # 9 Polarization: -10.40 SS G_CDS: 0.11 Total: -10.29 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.53 -5.97 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.349 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds