Wall clock time and date at job start Tue Mar 31 2020 14:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47164 * 240.00645 * 3 2 1 5 5 H 1.48503 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46976 * 120.00395 * 3 2 1 7 7 C 1.38657 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00314 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00370 * 359.97438 * 7 2 1 10 10 C 1.35640 * 117.00392 * 185.21592 * 9 7 2 11 11 C 1.38773 * 120.13613 * 354.43922 * 10 9 7 12 12 C 1.38098 * 120.05055 * 180.02562 * 11 10 9 13 13 C 1.38461 * 120.33190 * 359.97258 * 12 11 10 14 14 C 1.37999 * 120.27332 * 0.02562 * 13 12 11 15 15 C 1.39322 * 119.94340 * 0.02562 * 14 13 12 16 16 C 1.48228 * 120.15865 * 180.02562 * 15 14 13 17 17 C 1.39124 * 119.70269 * 359.97438 * 16 15 14 18 18 C 1.39207 * 118.97052 * 179.97438 * 17 16 15 19 19 N 1.39208 * 120.81668 * 180.02562 * 18 17 16 20 20 C 1.39607 * 118.36388 * 359.97438 * 18 17 16 21 21 C 1.37933 * 119.28743 * 0.02562 * 20 18 17 22 22 C 1.50703 * 119.50569 * 179.97438 * 21 20 18 23 23 F 1.39901 * 109.47012 * 89.99899 * 22 21 20 24 24 F 1.39902 * 109.47064 * 210.00185 * 22 21 20 25 25 F 1.39905 * 109.47117 * 330.00182 * 22 21 20 26 26 N 1.31885 * 120.98562 * 359.74379 * 21 20 18 27 27 H 0.97000 * 119.99845 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97566 * 359.97039 * 11 10 9 29 29 H 1.07998 * 119.83247 * 179.69362 * 12 11 10 30 30 H 1.07999 * 119.86560 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.02473 * 179.97438 * 14 13 12 32 32 H 1.08008 * 120.51293 * 359.95278 * 17 16 15 33 33 H 0.96996 * 120.00208 * 0.02562 * 19 18 17 34 34 H 0.97001 * 119.99465 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.35743 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0692 -3.5035 0.1088 11 6 3.4555 -3.4401 0.0982 12 6 4.2015 -4.5970 0.2091 13 6 3.5735 -5.8248 0.3319 14 6 2.1958 -5.9035 0.3440 15 6 1.4320 -4.7438 0.2318 16 6 -0.0481 -4.8227 0.2448 17 6 -0.6714 -6.0603 0.3691 18 6 -2.0623 -6.1167 0.3801 19 7 -2.7257 -7.3343 0.5031 20 6 -2.7754 -4.9220 0.2659 21 6 -2.0859 -3.7334 0.1462 22 6 -2.8508 -2.4408 0.0220 23 9 -3.0823 -1.9117 1.2963 24 9 -2.1059 -1.5289 -0.7334 25 9 -4.0743 -2.6821 -0.6121 26 7 -0.7672 -3.7107 0.1433 27 1 -0.4850 0.8401 0.0004 28 1 3.9513 -2.4855 0.0023 29 1 5.2801 -4.5441 0.1954 30 1 4.1643 -6.7248 0.4177 31 1 1.7102 -6.8634 0.4395 32 1 -0.0852 -6.9633 0.4553 33 1 -2.2184 -8.1572 0.5828 34 1 -3.6953 -7.3598 0.5098 35 1 -3.8554 -4.9283 0.2712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:31 Heat of formation + Delta-G solvation = -121.148263 kcal Electronic energy + Delta-G solvation = -27686.551415 eV Core-core repulsion = 23234.970861 eV Total energy + Delta-G solvation = -4451.580554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.94796 -48.56462 -48.26108 -41.43063 -40.27891 -37.95702 -36.41443 -34.18487 -33.95195 -31.02500 -30.66371 -30.15965 -27.53095 -27.00262 -24.97720 -23.57388 -22.56846 -22.07589 -19.68625 -19.51946 -19.40860 -19.24771 -18.50095 -18.06307 -17.07286 -16.81324 -16.33753 -16.05484 -15.90007 -15.64737 -15.56280 -15.38499 -15.17503 -14.93205 -14.89802 -14.78695 -14.54100 -14.42215 -14.30120 -14.10134 -13.51650 -13.39827 -13.04053 -12.69547 -12.59810 -12.40563 -12.33977 -12.18514 -12.01891 -11.13738 -10.78624 -10.64027 -10.13855 -9.36425 -8.97655 -8.70466 -8.23633 -5.91214 -0.33664 0.34972 0.84489 1.02298 1.37298 1.47730 1.51387 1.66471 2.23994 2.65620 2.66777 2.84891 3.05315 3.23993 3.36966 3.60930 3.64063 3.71164 3.93170 4.09336 4.21402 4.31313 4.41937 4.50571 4.64752 4.72610 4.89790 4.93387 5.14497 5.24274 5.26151 5.50824 5.73592 5.78562 5.83029 6.12500 6.30596 6.37489 6.94721 7.12847 7.19835 7.98879 8.89801 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.007172 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.874401 B = 3903.314017 C = 6648.109415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C -0.009 4.009 3 Si 1.004 2.996 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.429 4.429 8 H 0.092 0.908 9 O -0.160 6.160 10 C 0.136 3.864 11 C -0.264 4.264 12 C -0.055 4.055 13 C -0.205 4.205 14 C -0.040 4.040 15 C -0.167 4.167 16 C 0.205 3.795 17 C -0.224 4.224 18 C 0.263 3.737 19 N -0.838 5.838 20 C -0.223 4.223 21 C 0.066 3.934 22 C 0.512 3.488 23 F -0.186 7.186 24 F -0.156 7.156 25 F -0.175 7.175 26 N -0.487 5.487 27 H 0.263 0.737 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.174 0.826 33 H 0.417 0.583 34 H 0.414 0.586 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 -16.163 1.209 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.212 4.212 3 Si 0.825 3.175 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.506 4.506 8 H 0.109 0.891 9 O -0.062 6.062 10 C 0.081 3.919 11 C -0.284 4.284 12 C -0.073 4.073 13 C -0.223 4.223 14 C -0.058 4.058 15 C -0.169 4.169 16 C 0.070 3.930 17 C -0.249 4.249 18 C 0.147 3.853 19 N -0.379 5.379 20 C -0.249 4.249 21 C -0.075 4.075 22 C 0.456 3.544 23 F -0.168 7.168 24 F -0.137 7.137 25 F -0.156 7.156 26 N -0.199 5.199 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.161 0.839 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.192 0.808 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.253 -15.099 1.102 15.484 hybrid contribution -0.384 0.810 0.014 0.897 sum -3.637 -14.288 1.116 14.786 Atomic orbital electron populations 1.70327 1.06943 1.27490 1.44948 1.26327 0.96782 1.01761 0.96291 0.84870 0.77506 0.75765 0.79350 1.18765 1.20074 1.18833 1.21725 0.92096 0.82402 1.54353 0.89090 1.84261 1.33737 1.11211 1.76963 1.20089 0.91273 0.88340 0.92222 1.21268 0.93086 1.00373 1.13627 1.21295 1.00250 0.91654 0.94119 1.21076 0.94053 0.98061 1.09119 1.21194 0.93946 0.96015 0.94693 1.18092 0.90065 0.92138 1.16602 1.19691 0.92884 0.87885 0.92554 1.21781 0.93374 0.98937 1.10774 1.17523 0.90903 0.87228 0.89644 1.42158 1.10118 1.04063 1.81598 1.21308 1.01921 0.90651 1.11033 1.20632 0.91687 0.92188 1.02988 1.18240 0.76899 0.85195 0.74046 1.93142 1.94715 1.88114 1.40827 1.93392 1.75924 1.68571 1.75768 1.93128 1.45648 1.94508 1.82359 1.67484 1.05686 1.32403 1.14281 0.92786 0.86714 0.83890 0.82527 0.82215 0.80836 0.75086 0.75453 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.15 12.18 21.61 0.26 -52.89 16 2 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 3 Si 1.00 44.70 29.55 68.60 2.03 46.73 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.43 -25.49 9.49 67.92 0.64 -24.85 16 8 H 0.09 5.03 5.21 -2.91 -0.02 5.02 16 9 O -0.16 -9.69 7.59 -21.35 -0.16 -9.85 16 10 C 0.14 6.91 6.65 22.82 0.15 7.06 16 11 C -0.26 -11.64 9.16 22.36 0.20 -11.43 16 12 C -0.05 -1.82 10.03 22.29 0.22 -1.60 16 13 C -0.20 -5.79 10.03 22.27 0.22 -5.57 16 14 C -0.04 -1.23 9.41 22.47 0.21 -1.02 16 15 C -0.17 -7.07 5.89 -19.94 -0.12 -7.19 16 16 C 0.20 8.54 6.73 41.87 0.28 8.82 16 17 C -0.22 -6.48 9.34 22.72 0.21 -6.27 16 18 C 0.26 6.62 6.81 38.53 0.26 6.88 16 19 N -0.84 -11.18 9.08 -51.05 -0.46 -11.65 16 20 C -0.22 -6.91 9.31 22.53 0.21 -6.70 16 21 C 0.07 2.80 6.29 42.48 0.27 3.07 16 22 C 0.51 22.76 3.43 71.24 0.24 23.01 16 23 F -0.19 -8.50 17.30 44.97 0.78 -7.72 16 24 F -0.16 -8.36 15.53 44.97 0.70 -7.66 16 25 F -0.17 -6.46 16.43 44.97 0.74 -5.72 16 26 N -0.49 -24.02 7.75 -173.35 -1.34 -25.36 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 29 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.16 3.36 6.18 -2.91 -0.02 3.34 16 32 H 0.17 3.45 6.19 -2.91 -0.02 3.43 16 33 H 0.42 3.33 8.86 -92.71 -0.82 2.51 16 34 H 0.41 3.79 8.86 -92.71 -0.82 2.97 16 35 H 0.16 3.94 7.58 -2.91 -0.02 3.91 16 Total: -1.00 -80.11 317.73 5.59 -74.51 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.43 Total: 15.46 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 3.49 Total: -15.85 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -1.54 Total: -89.90 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.16 Total: -9.85 kcal Atomic # 9 Polarization: -23.32 SS G_CDS: 2.22 Total: -21.11 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -80.11 5.59 -74.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.636 kcal (2) G-P(sol) polarization free energy of solvation -80.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds