Wall clock time and date at job start Tue Mar 31 2020 14:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48495 * 109.47371 * 270.00363 * 3 2 1 5 5 H 1.48510 * 109.47061 * 30.00013 * 3 2 1 6 6 H 1.48503 * 109.47402 * 149.99770 * 3 2 1 7 7 C 1.38655 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00218 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.35644 * 117.00386 * 185.06082 * 9 7 2 11 11 C 1.38776 * 120.13584 * 354.40857 * 10 9 7 12 12 C 1.38091 * 120.04977 * 179.97438 * 11 10 9 13 13 C 1.38461 * 120.33535 * 359.97438 * 12 11 10 14 14 C 1.37993 * 120.27246 * 359.73885 * 13 12 11 15 15 C 1.39326 * 119.94150 * 0.54079 * 14 13 12 16 16 C 1.48225 * 120.16119 * 179.74106 * 15 14 13 17 17 C 1.39123 * 119.70037 * 359.72504 * 16 15 14 18 18 C 1.39205 * 118.97388 * 179.97438 * 17 16 15 19 19 N 1.39202 * 120.82339 * 179.72197 * 18 17 16 20 20 C 1.39617 * 118.36303 * 359.97438 * 18 17 16 21 21 C 1.50697 * 120.35758 * 179.97438 * 20 18 17 22 22 F 1.39901 * 109.47236 * 179.97438 * 21 20 18 23 23 F 1.39900 * 109.46771 * 299.99918 * 21 20 18 24 24 F 1.39901 * 109.47016 * 59.99581 * 21 20 18 25 25 C 1.37934 * 119.28430 * 359.97371 * 20 18 17 26 26 N 1.31889 * 120.98769 * 0.03078 * 25 20 18 27 27 H 0.96998 * 119.99862 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.97543 * 359.97018 * 11 10 9 29 29 H 1.08007 * 119.83281 * 179.97438 * 12 11 10 30 30 H 1.07995 * 119.86194 * 180.02562 * 13 12 11 31 31 H 1.07998 * 120.02724 * 180.27799 * 14 13 12 32 32 H 1.08000 * 120.51629 * 0.02562 * 17 16 15 33 33 H 0.96996 * 119.99814 * 0.02562 * 19 18 17 34 34 H 0.96999 * 120.00644 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.50503 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0016 10 6 2.0694 -3.5035 0.1087 11 6 3.4557 -3.4403 0.0942 12 6 4.2019 -4.5970 0.2039 13 6 3.5742 -5.8248 0.3292 14 6 2.1967 -5.9029 0.3511 15 6 1.4325 -4.7436 0.2354 16 6 -0.0475 -4.8224 0.2525 17 6 -0.6705 -6.0599 0.3789 18 6 -2.0613 -6.1163 0.3938 19 7 -2.7245 -7.3344 0.5127 20 6 -2.7748 -4.9216 0.2812 21 6 -4.2817 -4.9305 0.2916 22 9 -4.7568 -3.6205 0.1667 23 9 -4.7508 -5.7011 -0.7777 24 9 -4.7365 -5.4782 1.4959 25 6 -2.0856 -3.7329 0.1602 26 7 -0.7669 -3.7107 0.1491 27 1 -0.4850 0.8400 0.0004 28 1 3.9513 -2.4856 -0.0030 29 1 5.2805 -4.5438 0.1918 30 1 4.1653 -6.7246 0.4149 31 1 1.7113 -6.8622 0.4536 32 1 -0.0842 -6.9628 0.4650 33 1 -2.2170 -8.1577 0.5869 34 1 -3.6941 -7.3599 0.5222 35 1 -2.6339 -2.8065 0.0733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:34 Heat of formation + Delta-G solvation = -127.151034 kcal Electronic energy + Delta-G solvation = -27004.574877 eV Core-core repulsion = 22552.734023 eV Total energy + Delta-G solvation = -4451.840853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.22694 -48.73453 -48.66533 -41.45351 -40.32697 -38.00723 -36.53878 -34.22510 -33.90406 -31.51491 -30.51036 -30.40497 -27.27013 -26.94171 -24.46477 -24.17624 -22.80480 -22.03867 -19.79651 -19.70762 -19.54610 -19.31570 -18.98385 -18.04309 -17.78482 -16.52546 -16.38736 -16.06504 -15.75049 -15.71181 -15.56340 -15.50329 -15.18231 -15.12607 -14.94751 -14.87255 -14.85217 -14.81270 -14.61958 -14.15251 -13.81356 -13.45365 -13.09294 -12.71915 -12.66164 -12.43769 -12.35704 -12.17743 -12.03899 -11.16032 -10.80267 -10.70148 -10.06874 -9.41165 -9.18454 -8.76041 -8.33892 -5.98796 -0.44392 0.52654 0.79457 0.90757 1.37736 1.46916 1.53504 1.63123 2.21739 2.54007 2.67357 2.73612 2.97033 3.01723 3.33066 3.46854 3.49032 3.60677 3.62380 4.11913 4.17158 4.26081 4.38200 4.57860 4.59205 4.72102 4.78128 4.89793 5.11195 5.21015 5.24167 5.50797 5.71914 5.75917 5.80395 6.08624 6.14266 6.27506 6.69234 7.06854 7.31850 7.93563 8.84542 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.004753 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.605873 B = 5889.569118 C = 8093.074745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C -0.012 4.012 3 Si 1.009 2.991 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.424 4.424 8 H 0.096 0.904 9 O -0.162 6.162 10 C 0.141 3.859 11 C -0.263 4.263 12 C -0.051 4.051 13 C -0.204 4.204 14 C -0.038 4.038 15 C -0.172 4.172 16 C 0.229 3.771 17 C -0.252 4.252 18 C 0.305 3.695 19 N -0.838 5.838 20 C -0.349 4.349 21 C 0.530 3.470 22 F -0.181 7.181 23 F -0.176 7.176 24 F -0.177 7.177 25 C 0.186 3.814 26 N -0.516 5.516 27 H 0.268 0.732 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.423 0.577 34 H 0.405 0.595 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 -16.003 1.380 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.213 4.213 3 Si 0.830 3.170 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.500 4.500 8 H 0.113 0.887 9 O -0.064 6.064 10 C 0.085 3.915 11 C -0.282 4.282 12 C -0.069 4.069 13 C -0.222 4.222 14 C -0.056 4.056 15 C -0.174 4.174 16 C 0.097 3.903 17 C -0.277 4.277 18 C 0.188 3.812 19 N -0.378 5.378 20 C -0.359 4.359 21 C 0.475 3.525 22 F -0.162 7.162 23 F -0.158 7.158 24 F -0.158 7.158 25 C 0.025 3.975 26 N -0.227 5.227 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.176 0.824 31 H 0.177 0.823 32 H 0.193 0.807 33 H 0.256 0.744 34 H 0.236 0.764 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.403 -15.014 1.281 15.259 hybrid contribution -0.720 0.445 0.014 0.847 sum -3.123 -14.569 1.295 14.956 Atomic orbital electron populations 1.70270 1.07559 1.28006 1.46390 1.26403 0.96726 1.02135 0.96004 0.84722 0.77903 0.75446 0.78942 1.19180 1.19914 1.17993 1.21884 0.92353 0.82380 1.53396 0.88680 1.84268 1.33819 1.11256 1.77008 1.20081 0.91290 0.88208 0.91891 1.21290 0.92983 1.00494 1.13462 1.21333 1.00387 0.91577 0.93643 1.21102 0.94011 0.98187 1.08931 1.21233 0.94025 0.96078 0.94271 1.18120 0.90129 0.92219 1.16966 1.20041 0.93313 0.88516 0.88409 1.21566 0.92022 0.99429 1.14672 1.17314 0.91400 0.85661 0.86806 1.42383 1.09949 1.04855 1.80630 1.20494 0.91739 0.96556 1.27153 1.17799 0.87734 0.73379 0.73561 1.93159 1.89950 1.37387 1.95715 1.93191 1.90369 1.75438 1.56761 1.93191 1.90798 1.85630 1.46176 1.22454 0.90097 0.96315 0.88664 1.68331 1.06621 1.30847 1.16862 0.92330 0.86453 0.83657 0.82450 0.82264 0.80663 0.74446 0.76422 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.80 13.67 21.61 0.30 -53.51 16 2 C -0.01 -0.68 5.49 84.83 0.47 -0.21 16 3 Si 1.01 43.21 29.55 68.60 2.03 45.23 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.42 -24.55 9.49 67.92 0.64 -23.91 16 8 H 0.10 5.10 5.21 -2.91 -0.02 5.08 16 9 O -0.16 -9.58 7.59 -21.37 -0.16 -9.74 16 10 C 0.14 6.96 6.65 22.82 0.15 7.11 16 11 C -0.26 -11.21 9.16 22.36 0.20 -11.01 16 12 C -0.05 -1.63 10.03 22.29 0.22 -1.41 16 13 C -0.20 -5.59 10.03 22.26 0.22 -5.37 16 14 C -0.04 -1.14 9.41 22.47 0.21 -0.92 16 15 C -0.17 -7.17 5.89 -19.94 -0.12 -7.29 16 16 C 0.23 9.49 6.73 41.86 0.28 9.77 16 17 C -0.25 -7.52 9.34 22.72 0.21 -7.30 16 18 C 0.30 8.46 6.70 38.54 0.26 8.71 16 19 N -0.84 -14.83 8.87 -51.05 -0.45 -15.28 16 20 C -0.35 -11.56 5.40 -19.60 -0.11 -11.67 16 21 C 0.53 15.27 2.81 71.23 0.20 15.47 16 22 F -0.18 -5.71 15.99 44.97 0.72 -5.00 16 23 F -0.18 -4.60 16.34 44.97 0.73 -3.86 16 24 F -0.18 -4.63 16.35 44.97 0.74 -3.89 16 25 C 0.19 7.82 10.58 84.61 0.90 8.71 16 26 N -0.52 -25.06 8.15 -185.18 -1.51 -26.57 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.16 3.32 6.18 -2.91 -0.02 3.31 16 32 H 0.18 3.62 6.19 -2.91 -0.02 3.60 16 33 H 0.42 4.60 8.86 -92.71 -0.82 3.78 16 34 H 0.41 6.70 6.46 -92.71 -0.60 6.10 16 35 H 0.15 6.33 7.15 -2.91 -0.02 6.31 16 Total: -1.00 -74.33 315.65 5.93 -68.40 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.20 Total: 23.53 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 3.75 Total: -19.31 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -1.67 Total: -95.36 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.16 Total: -9.74 kcal Atomic # 9 Polarization: -14.94 SS G_CDS: 2.19 Total: -12.75 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.33 5.93 -68.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.754 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds