Wall clock time and date at job start Tue Mar 31 2020 14:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86793 * 119.99709 * 2 1 4 4 H 1.48495 * 109.47442 * 270.00257 * 3 2 1 5 5 H 1.48498 * 109.47025 * 30.00616 * 3 2 1 6 6 H 1.48503 * 109.46963 * 150.00024 * 3 2 1 7 7 C 1.38655 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00340 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.35687 * 117.00080 * 185.05632 * 9 7 2 11 11 C 1.39016 * 119.94516 * 354.44918 * 10 9 7 12 12 C 1.37812 * 120.05362 * 179.97438 * 11 10 9 13 13 C 1.39465 * 119.94662 * 359.97438 * 12 11 10 14 14 C 1.48270 * 120.05414 * 180.02562 * 13 12 11 15 15 C 1.39106 * 119.69436 * 180.02562 * 14 13 12 16 16 C 1.39215 * 118.96497 * 179.75065 * 15 14 13 17 17 N 1.39205 * 120.81939 * 180.25294 * 16 15 14 18 18 C 1.39607 * 118.36545 * 0.48784 * 16 15 14 19 19 C 1.50701 * 120.35863 * 179.76416 * 18 16 15 20 20 F 1.39901 * 109.46934 * 179.72213 * 19 18 16 21 21 F 1.39902 * 109.47404 * 59.72031 * 19 18 16 22 22 F 1.39899 * 109.46832 * 299.71942 * 19 18 16 23 23 C 1.37937 * 119.28297 * 359.48575 * 18 16 15 24 24 N 1.31889 * 120.98297 * 0.27683 * 23 18 16 25 25 C 1.39464 * 119.88947 * 0.27998 * 13 12 11 26 26 C 1.37814 * 119.94969 * 359.44680 * 25 13 12 27 27 H 0.96991 * 120.00530 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.96737 * 359.95569 * 11 10 9 29 29 H 1.07995 * 120.02672 * 180.02562 * 12 11 10 30 30 H 1.07995 * 120.51913 * 0.02562 * 15 14 13 31 31 H 0.96995 * 120.00454 * 180.24423 * 17 16 15 32 32 H 0.96998 * 119.99810 * 0.23467 * 17 16 15 33 33 H 1.07998 * 119.50891 * 180.29814 * 23 18 16 34 34 H 1.08001 * 120.02165 * 179.72567 * 25 13 12 35 35 H 1.07999 * 119.97565 * 180.25828 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4469 2.6525 0.7002 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0698 -3.5040 0.1055 11 6 3.4582 -3.4358 0.0914 12 6 4.2069 -4.5877 0.1994 13 6 3.5706 -5.8225 0.3235 14 6 4.3738 -7.0634 0.4405 15 6 3.7313 -8.2910 0.5635 16 6 4.5003 -9.4469 0.6670 17 7 3.8976 -10.6961 0.7863 18 6 5.8907 -9.3221 0.6533 19 6 6.7662 -10.5433 0.7679 20 9 8.1107 -10.1590 0.7232 21 9 6.4944 -11.4134 -0.2933 22 9 6.5065 -11.1910 1.9804 23 6 6.4544 -8.0694 0.5278 24 7 5.6998 -6.9924 0.4265 25 6 2.1776 -5.8888 0.3321 26 6 1.4332 -4.7335 0.2294 27 1 -0.4850 0.8399 0.0004 28 1 3.9504 -2.4793 -0.0047 29 1 5.2855 -4.5342 0.1888 30 1 2.6529 -8.3471 0.5739 31 1 4.4448 -11.4934 0.8613 32 1 2.9304 -10.7691 0.7947 33 1 7.5296 -7.9691 0.5119 34 1 1.6826 -6.8443 0.4237 35 1 0.3544 -4.7840 0.2402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:37 Heat of formation + Delta-G solvation = -121.056687 kcal Electronic energy + Delta-G solvation = -25755.013404 eV Core-core repulsion = 21303.436821 eV Total energy + Delta-G solvation = -4451.576583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.35773 -47.86790 -47.80923 -40.39501 -39.03122 -36.76247 -35.58026 -32.76793 -32.15629 -30.68707 -30.02851 -28.71416 -26.12248 -25.25597 -23.58204 -22.82190 -21.68382 -20.75286 -18.91725 -18.67651 -18.52925 -18.14144 -17.56158 -17.25974 -16.72079 -15.53766 -14.99897 -14.79746 -14.67882 -14.53820 -14.42713 -14.26798 -14.20891 -14.18634 -14.01264 -13.96972 -13.76099 -13.69125 -13.19600 -12.86435 -12.51597 -12.05347 -11.84401 -11.82077 -11.40658 -11.12458 -11.02412 -10.75306 -10.54080 -9.61954 -9.51642 -9.35327 -8.89152 -8.41478 -8.33752 -7.22780 -6.63979 -4.18980 0.62379 1.39634 2.14787 2.25218 2.52646 3.04883 3.06177 3.11200 3.29256 3.63311 3.71618 3.83469 3.84253 4.28516 4.38071 4.56142 4.57699 4.93761 5.00924 5.08218 5.24602 5.43583 5.60132 5.63030 5.74139 5.77002 6.06949 6.28043 6.38077 6.54118 6.79356 6.87048 6.92712 7.10574 7.21270 7.24279 7.28169 7.63798 7.81779 8.08845 8.81001 9.47248 10.52649 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032822 B = 0.002346 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.886054 B =11931.400949 C =12604.066239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.391 4.391 8 H 0.098 0.902 9 O -0.163 6.163 10 C 0.169 3.831 11 C -0.246 4.246 12 C -0.013 4.013 13 C -0.179 4.179 14 C 0.275 3.725 15 C -0.267 4.267 16 C 0.307 3.693 17 N -0.858 5.858 18 C -0.354 4.354 19 C 0.522 3.478 20 F -0.177 7.177 21 F -0.183 7.183 22 F -0.183 7.183 23 C 0.204 3.796 24 N -0.525 5.525 25 C -0.040 4.040 26 C -0.199 4.199 27 H 0.274 0.726 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.400 0.600 32 H 0.408 0.592 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.225 -18.916 1.519 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.467 4.467 8 H 0.115 0.885 9 O -0.064 6.064 10 C 0.113 3.887 11 C -0.265 4.265 12 C -0.032 4.032 13 C -0.181 4.181 14 C 0.145 3.855 15 C -0.292 4.292 16 C 0.192 3.808 17 N -0.397 5.397 18 C -0.364 4.364 19 C 0.467 3.533 20 F -0.158 7.158 21 F -0.164 7.164 22 F -0.164 7.164 23 C 0.042 3.958 24 N -0.237 5.237 25 C -0.060 4.060 26 C -0.218 4.218 27 H 0.084 0.916 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.230 0.770 32 H 0.237 0.763 33 H 0.180 0.820 34 H 0.135 0.865 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.137 -17.845 1.417 20.098 hybrid contribution 0.055 -0.710 0.132 0.724 sum 9.192 -18.555 1.549 20.765 Atomic orbital electron populations 1.70029 1.06127 1.28244 1.44193 1.25387 0.95907 0.99157 0.96037 0.85646 0.79037 0.79513 0.78947 1.19640 1.20081 1.18889 1.21483 0.92158 0.80547 1.52482 0.88471 1.83938 1.34942 1.11794 1.75696 1.19564 0.90398 0.87866 0.90912 1.21160 0.93557 0.99210 1.12586 1.20931 0.99473 0.90701 0.92133 1.17904 0.91949 0.90688 1.17517 1.19803 0.88780 0.91892 0.85068 1.21425 1.00934 0.90794 1.16083 1.17421 0.89872 0.86725 0.86812 1.42546 1.10412 1.05131 1.81574 1.20299 0.92633 0.94903 1.28518 1.18040 0.78602 0.83224 0.73397 1.93149 1.35486 1.90982 1.96166 1.93194 1.93550 1.72240 1.57457 1.93194 1.93789 1.83439 1.46003 1.22365 1.00336 0.85572 0.87524 1.67968 1.05742 1.30492 1.19490 1.20677 0.92180 0.97026 0.96070 1.20104 0.99723 0.90001 1.12011 0.91624 0.85053 0.85783 0.84041 0.77042 0.76256 0.81974 0.86530 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.82 13.67 55.48 0.76 -23.06 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.39 -10.36 9.48 30.89 0.29 -10.07 16 8 H 0.10 2.37 5.19 -52.49 -0.27 2.10 16 9 O -0.16 -4.39 9.75 0.28 0.00 -4.39 16 10 C 0.17 3.86 6.65 -39.01 -0.26 3.60 16 11 C -0.25 -5.13 9.15 -39.45 -0.36 -5.49 16 12 C -0.01 -0.25 9.56 -39.28 -0.38 -0.63 16 13 C -0.18 -3.10 5.88 -104.86 -0.62 -3.72 16 14 C 0.28 4.27 6.73 -83.00 -0.56 3.72 16 15 C -0.27 -3.42 9.34 -38.90 -0.36 -3.78 16 16 C 0.31 3.51 6.70 -83.64 -0.56 2.95 16 17 N -0.86 -6.98 8.87 32.51 0.29 -6.69 16 18 C -0.35 -4.21 5.40 -104.22 -0.56 -4.77 16 19 C 0.52 5.56 2.81 36.01 0.10 5.66 16 20 F -0.18 -1.87 15.99 2.25 0.04 -1.83 16 21 F -0.18 -1.92 16.32 2.25 0.04 -1.88 16 22 F -0.18 -1.92 16.37 2.25 0.04 -1.88 16 23 C 0.20 2.60 10.58 -17.64 -0.19 2.42 16 24 N -0.53 -8.05 9.42 -9.88 -0.09 -8.14 16 25 C -0.04 -0.67 9.41 -39.28 -0.37 -1.04 16 26 C -0.20 -3.90 9.98 -39.45 -0.39 -4.30 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.13 2.72 5.62 -52.49 -0.30 2.42 16 29 H 0.12 2.13 7.53 -52.49 -0.40 1.74 16 30 H 0.14 1.52 6.18 -52.49 -0.32 1.20 16 31 H 0.40 2.99 6.46 -40.82 -0.26 2.73 16 32 H 0.41 2.37 8.86 -40.82 -0.36 2.00 16 33 H 0.16 1.68 7.15 -52.49 -0.38 1.30 16 34 H 0.12 1.53 6.17 -52.49 -0.32 1.21 16 35 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -29.36 317.95 -5.64 -35.00 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.17 Total: 8.06 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -4.31 Total: -14.47 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.95 Total: -37.89 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.00 Total: -4.39 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.11 Total: -5.60 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.36 -5.64 -35.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.054 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds