Wall clock time and date at job start Tue Mar 31 2020 14:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48500 * 109.47206 * 270.00046 * 3 2 1 5 5 H 1.48504 * 109.47016 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47491 * 149.99932 * 3 2 1 7 7 C 1.38650 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00122 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.35679 * 116.99755 * 185.06074 * 9 7 2 11 11 C 1.38752 * 120.13301 * 354.40757 * 10 9 7 12 12 C 1.38115 * 120.04736 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32407 * 359.97033 * 12 11 10 14 14 C 1.38025 * 120.26662 * 0.02562 * 13 12 11 15 15 C 1.39280 * 119.94595 * 0.02562 * 14 13 12 16 16 C 1.48294 * 120.15688 * 179.97438 * 15 14 13 17 17 C 1.39963 * 119.89703 * 129.98006 * 16 15 14 18 18 C 1.36582 * 120.56963 * 180.02562 * 17 16 15 19 19 C 1.38873 * 120.18460 * 359.96095 * 18 17 16 20 20 O 1.34984 * 133.74333 * 179.97438 * 19 18 17 21 21 C 1.34743 * 107.93997 * 180.02562 * 20 19 18 22 22 C 1.47925 * 124.96695 * 179.97438 * 21 20 19 23 23 N 1.34775 * 120.00094 * 0.02562 * 22 21 20 24 24 O 1.21535 * 119.99275 * 180.02562 * 22 21 20 25 25 N 1.30666 * 110.05965 * 0.02562 * 21 20 19 26 26 C 1.34767 * 108.95159 * 359.97438 * 25 21 20 27 27 C 1.38716 * 119.89801 * 309.70606 * 16 15 14 28 28 H 0.96995 * 119.99854 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97912 * 0.02562 * 11 10 9 30 30 H 1.07994 * 119.83941 * 179.70148 * 12 11 10 31 31 H 1.07997 * 119.87007 * 179.97438 * 13 12 11 32 32 H 1.07998 * 120.02206 * 180.02562 * 14 13 12 33 33 H 1.08001 * 119.71704 * 359.97438 * 17 16 15 34 34 H 1.07996 * 119.90779 * 179.97438 * 18 17 16 35 35 H 0.96997 * 120.00019 * 0.02562 * 23 22 21 36 36 H 0.96998 * 119.99628 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.26610 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0697 -3.5037 0.1077 11 6 3.4557 -3.4402 0.0943 12 6 4.2020 -4.5973 0.2030 13 6 3.5742 -5.8250 0.3264 14 6 2.1963 -5.9034 0.3413 15 6 1.4327 -4.7438 0.2313 16 6 -0.0481 -4.8226 0.2462 17 6 -0.7822 -3.9942 1.1028 18 6 -2.1464 -4.0558 1.1282 19 6 -2.8208 -4.9438 0.3004 20 8 -4.1253 -5.2290 0.1034 21 6 -4.2024 -6.1925 -0.8354 22 6 -5.4598 -6.7877 -1.3382 23 7 -6.6451 -6.3684 -0.8527 24 8 -5.4239 -7.6547 -2.1891 25 7 -3.0038 -6.5249 -1.2359 26 6 -2.0979 -5.7839 -0.5677 27 6 -0.7015 -5.7131 -0.5930 28 1 -0.4850 0.8400 0.0004 29 1 3.9513 -2.4855 -0.0012 30 1 5.2805 -4.5445 0.1874 31 1 4.1650 -6.7252 0.4104 32 1 1.7107 -6.8632 0.4381 33 1 -0.2655 -3.3010 1.7500 34 1 -2.7022 -3.4119 1.7936 35 1 -6.6737 -5.6762 -0.1739 36 1 -7.4696 -6.7585 -1.1827 37 1 -0.1362 -6.3493 -1.2578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:50 Heat of formation + Delta-G solvation = 7.381862 kcal Electronic energy + Delta-G solvation = -25735.499154 eV Core-core repulsion = 21831.348825 eV Total energy + Delta-G solvation = -3904.150329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.20695 -39.63709 -39.36900 -37.60146 -36.39332 -34.86252 -34.02201 -32.45495 -31.84741 -29.96947 -29.23987 -28.31661 -25.48964 -25.31195 -23.31700 -22.15479 -21.32855 -21.04641 -20.96734 -18.57223 -18.11409 -18.00766 -17.20283 -17.03868 -16.89303 -15.99952 -15.33321 -14.78020 -14.75081 -14.62887 -14.33983 -14.22666 -13.88143 -13.70072 -13.53761 -13.21429 -12.75530 -12.21709 -12.16949 -11.80668 -11.56628 -11.41231 -11.29550 -10.97012 -10.88979 -10.83381 -10.80434 -10.53356 -10.35238 -10.19641 -9.50422 -8.98629 -8.81599 -8.31632 -7.96984 -7.27855 -6.57623 -4.16087 0.46650 1.27180 1.96975 2.12837 2.19493 2.26209 2.91094 3.01262 3.05661 3.06823 3.11067 3.85276 3.91508 4.17052 4.45643 4.63733 4.87339 4.97494 5.07295 5.24251 5.28721 5.49065 5.58640 5.60956 5.70754 5.85493 5.96680 6.15984 6.24526 6.25863 6.31585 6.44848 6.57383 6.66605 6.72231 6.77569 6.86741 6.99292 7.13274 7.24276 7.27627 7.54030 7.66213 7.75156 7.86119 8.87774 9.53607 10.58879 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.003636 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.326106 B = 7699.176543 C = 9456.005712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.044 3.956 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.165 6.165 10 C 0.167 3.833 11 C -0.232 4.232 12 C -0.066 4.066 13 C -0.214 4.214 14 C -0.055 4.055 15 C -0.141 4.141 16 C -0.004 4.004 17 C -0.028 4.028 18 C -0.099 4.099 19 C 0.024 3.976 20 O -0.206 6.206 21 C 0.165 3.835 22 C 0.628 3.372 23 N -0.835 5.835 24 O -0.493 6.493 25 N -0.396 5.396 26 C 0.008 3.992 27 C -0.052 4.052 28 H 0.271 0.729 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.411 0.589 36 H 0.416 0.584 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 -7.471 3.641 10.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.161 4.161 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.110 0.890 9 O -0.068 6.068 10 C 0.112 3.888 11 C -0.251 4.251 12 C -0.084 4.084 13 C -0.233 4.233 14 C -0.073 4.073 15 C -0.143 4.143 16 C -0.006 4.006 17 C -0.046 4.046 18 C -0.118 4.118 19 C -0.026 4.026 20 O -0.097 6.097 21 C -0.047 4.047 22 C 0.408 3.592 23 N -0.401 5.401 24 O -0.364 6.364 25 N -0.128 5.128 26 C -0.106 4.106 27 C -0.071 4.071 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.241 0.759 36 H 0.249 0.751 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.312 -8.246 2.605 10.706 hybrid contribution 0.058 1.700 0.601 1.804 sum -6.254 -6.546 3.207 9.605 Atomic orbital electron populations 1.70025 1.05868 1.27836 1.45156 1.25257 0.95836 0.98752 0.96291 0.85737 0.79001 0.80080 0.78816 1.19859 1.20207 1.19138 1.21348 0.91906 0.80675 1.53192 0.88959 1.83962 1.34166 1.11299 1.77327 1.19270 0.90102 0.87285 0.92128 1.21130 0.93447 0.99241 1.11304 1.20861 0.98674 0.92354 0.96505 1.20548 0.94110 0.97117 1.11510 1.20747 0.93532 0.95915 0.97150 1.17658 0.90159 0.91501 1.14976 1.18496 0.92755 0.94594 0.94738 1.21076 0.91805 0.95393 0.96295 1.19534 0.93578 0.98518 1.00196 1.20586 0.80230 1.00672 1.01134 1.84461 1.27058 1.48051 1.50114 1.25339 0.95586 0.91692 0.92039 1.16037 0.80654 0.81315 0.81157 1.43529 1.07458 1.43991 1.45135 1.90936 1.85501 1.29716 1.30280 1.70163 0.97868 1.22545 1.22273 1.19559 0.95167 0.97714 0.98194 1.20420 0.89097 0.99104 0.98489 0.91908 0.85219 0.87289 0.87273 0.86656 0.83355 0.84550 0.75946 0.75146 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.17 13.67 55.48 0.76 -22.41 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.33 29.55 -169.99 -5.02 14.31 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.40 -10.17 9.49 30.88 0.29 -9.87 16 8 H 0.09 2.21 5.21 -52.49 -0.27 1.94 16 9 O -0.17 -4.24 8.09 0.33 0.00 -4.23 16 10 C 0.17 3.70 6.55 -38.75 -0.25 3.44 16 11 C -0.23 -4.66 9.16 -39.44 -0.36 -5.02 16 12 C -0.07 -1.11 10.03 -39.55 -0.40 -1.51 16 13 C -0.21 -3.43 10.03 -39.58 -0.40 -3.83 16 14 C -0.06 -0.93 9.50 -39.27 -0.37 -1.30 16 15 C -0.14 -2.77 5.48 -104.73 -0.57 -3.34 16 16 C 0.00 -0.08 5.27 -104.94 -0.55 -0.63 16 17 C -0.03 -0.51 8.70 -39.53 -0.34 -0.86 16 18 C -0.10 -1.68 9.99 -39.94 -0.40 -2.07 16 19 C 0.02 0.42 7.43 -38.39 -0.29 0.14 16 20 O -0.21 -3.14 10.49 2.59 0.03 -3.11 16 21 C 0.17 2.60 8.02 -14.08 -0.11 2.49 16 22 C 0.63 8.22 8.10 -12.29 -0.10 8.12 16 23 N -0.83 -6.27 8.87 30.55 0.27 -6.00 16 24 O -0.49 -8.04 17.89 5.34 0.10 -7.94 16 25 N -0.40 -7.30 11.24 -9.40 -0.11 -7.40 16 26 C 0.01 0.15 7.21 -85.02 -0.61 -0.46 16 27 C -0.05 -0.94 9.56 -38.81 -0.37 -1.32 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 33 H 0.15 2.87 7.66 -52.49 -0.40 2.47 16 34 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 35 H 0.41 2.29 8.56 -40.82 -0.35 1.94 16 36 H 0.42 2.08 8.93 -40.82 -0.36 1.72 16 37 H 0.14 2.27 8.04 -52.48 -0.42 1.85 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -31.64 335.70 -6.78 -38.42 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -2.93 Total: 8.33 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -4.94 Total: -15.01 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.92 Total: -35.82 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.13 Total: -15.29 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.64 -6.78 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.803 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds