Wall clock time and date at job start Tue Mar 31 2020 14:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48500 * 109.47206 * 270.00046 * 3 2 1 5 5 H 1.48504 * 109.47016 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47491 * 149.99932 * 3 2 1 7 7 C 1.38650 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00122 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.35679 * 116.99755 * 185.06074 * 9 7 2 11 11 C 1.38752 * 120.13301 * 354.40757 * 10 9 7 12 12 C 1.38115 * 120.04736 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32407 * 359.97033 * 12 11 10 14 14 C 1.38025 * 120.26662 * 0.02562 * 13 12 11 15 15 C 1.39280 * 119.94595 * 0.02562 * 14 13 12 16 16 C 1.48294 * 120.15688 * 179.97438 * 15 14 13 17 17 C 1.39963 * 119.89703 * 129.98006 * 16 15 14 18 18 C 1.36582 * 120.56963 * 180.02562 * 17 16 15 19 19 C 1.38873 * 120.18460 * 359.96095 * 18 17 16 20 20 O 1.34984 * 133.74333 * 179.97438 * 19 18 17 21 21 C 1.34743 * 107.93997 * 180.02562 * 20 19 18 22 22 C 1.47925 * 124.96695 * 179.97438 * 21 20 19 23 23 N 1.34775 * 120.00094 * 0.02562 * 22 21 20 24 24 O 1.21535 * 119.99275 * 180.02562 * 22 21 20 25 25 N 1.30666 * 110.05965 * 0.02562 * 21 20 19 26 26 C 1.34767 * 108.95159 * 359.97438 * 25 21 20 27 27 C 1.38716 * 119.89801 * 309.70606 * 16 15 14 28 28 H 0.96995 * 119.99854 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97912 * 0.02562 * 11 10 9 30 30 H 1.07994 * 119.83941 * 179.70148 * 12 11 10 31 31 H 1.07997 * 119.87007 * 179.97438 * 13 12 11 32 32 H 1.07998 * 120.02206 * 180.02562 * 14 13 12 33 33 H 1.08001 * 119.71704 * 359.97438 * 17 16 15 34 34 H 1.07996 * 119.90779 * 179.97438 * 18 17 16 35 35 H 0.96997 * 120.00019 * 0.02562 * 23 22 21 36 36 H 0.96998 * 119.99628 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.26610 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0697 -3.5037 0.1077 11 6 3.4557 -3.4402 0.0943 12 6 4.2020 -4.5973 0.2030 13 6 3.5742 -5.8250 0.3264 14 6 2.1963 -5.9034 0.3413 15 6 1.4327 -4.7438 0.2313 16 6 -0.0481 -4.8226 0.2462 17 6 -0.7822 -3.9942 1.1028 18 6 -2.1464 -4.0558 1.1282 19 6 -2.8208 -4.9438 0.3004 20 8 -4.1253 -5.2290 0.1034 21 6 -4.2024 -6.1925 -0.8354 22 6 -5.4598 -6.7877 -1.3382 23 7 -6.6451 -6.3684 -0.8527 24 8 -5.4239 -7.6547 -2.1891 25 7 -3.0038 -6.5249 -1.2359 26 6 -2.0979 -5.7839 -0.5677 27 6 -0.7015 -5.7131 -0.5930 28 1 -0.4850 0.8400 0.0004 29 1 3.9513 -2.4855 -0.0012 30 1 5.2805 -4.5445 0.1874 31 1 4.1650 -6.7252 0.4104 32 1 1.7107 -6.8632 0.4381 33 1 -0.2655 -3.3010 1.7500 34 1 -2.7022 -3.4119 1.7936 35 1 -6.6737 -5.6762 -0.1739 36 1 -7.4696 -6.7585 -1.1827 37 1 -0.1362 -6.3493 -1.2578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:49 Heat of formation + Delta-G solvation = -16.484911 kcal Electronic energy + Delta-G solvation = -25736.534095 eV Core-core repulsion = 21831.348825 eV Total energy + Delta-G solvation = -3905.185270 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.53562 -41.01790 -40.61606 -39.06577 -37.92903 -36.16814 -34.99286 -34.26505 -33.28248 -31.34091 -30.71486 -29.75646 -27.30385 -26.57119 -24.71507 -23.58695 -22.80757 -22.40072 -22.20033 -19.80341 -19.71400 -19.29125 -18.62881 -18.23287 -18.19185 -17.38576 -16.67987 -16.36087 -16.08083 -15.86251 -15.76276 -15.58466 -15.31235 -15.13975 -15.06222 -14.67444 -14.36351 -13.65038 -13.59471 -13.49529 -13.05589 -12.83697 -12.73965 -12.49414 -12.36424 -12.21639 -12.10372 -12.02239 -11.71951 -11.18324 -11.05424 -10.77575 -10.25614 -9.70154 -9.41507 -8.84857 -8.42971 -6.08790 -0.83066 -0.15365 0.63780 0.72075 0.79302 0.93631 1.38245 1.45372 1.53067 1.78591 1.81127 2.18580 2.49045 2.87337 3.10621 3.23891 3.31593 3.46459 3.59405 3.86388 3.94927 4.10974 4.18049 4.24396 4.32699 4.50883 4.62810 4.70900 4.85447 4.94037 5.00074 5.12937 5.16050 5.27837 5.37883 5.38600 5.52949 5.70015 5.71706 5.78304 5.88367 6.04778 6.22743 6.30476 6.87642 7.02103 7.79668 8.77716 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.003636 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.326106 B = 7699.176543 C = 9456.005712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.011 4.011 3 Si 1.008 2.992 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.208 6.208 10 C 0.133 3.867 11 C -0.248 4.248 12 C -0.064 4.064 13 C -0.192 4.192 14 C -0.056 4.056 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.046 4.046 18 C -0.090 4.090 19 C 0.015 3.985 20 O -0.190 6.190 21 C 0.181 3.819 22 C 0.631 3.369 23 N -0.797 5.797 24 O -0.527 6.527 25 N -0.431 5.431 26 C -0.004 4.004 27 C -0.055 4.055 28 H 0.271 0.729 29 H 0.122 0.878 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.425 0.575 36 H 0.433 0.567 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 -8.952 4.047 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.210 4.210 3 Si 0.828 3.172 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.113 6.113 10 C 0.081 3.919 11 C -0.267 4.267 12 C -0.082 4.082 13 C -0.210 4.210 14 C -0.074 4.074 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.064 4.064 18 C -0.108 4.108 19 C -0.036 4.036 20 O -0.081 6.081 21 C -0.032 4.032 22 C 0.410 3.590 23 N -0.364 5.364 24 O -0.402 6.402 25 N -0.164 5.164 26 C -0.118 4.118 27 C -0.074 4.074 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.177 0.823 35 H 0.257 0.743 36 H 0.269 0.731 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.001 -9.754 3.044 11.850 hybrid contribution -0.060 1.833 0.498 1.901 sum -6.061 -7.921 3.542 10.584 Atomic orbital electron populations 1.70158 1.07568 1.28510 1.48133 1.26328 0.96708 1.02057 0.95952 0.84725 0.78054 0.75486 0.78896 1.19507 1.19776 1.17795 1.21757 0.92471 0.81481 1.53251 0.88313 1.83947 1.35147 1.11970 1.80237 1.19797 0.91267 0.87350 0.93491 1.21281 0.92958 1.00403 1.12035 1.21269 1.00414 0.91482 0.94993 1.21102 0.93996 0.98248 1.07679 1.21162 0.94161 0.96084 0.96029 1.17990 0.90848 0.91600 1.14356 1.18571 0.92796 0.95076 0.95267 1.20986 0.92663 0.95729 0.97001 1.19679 0.93062 0.98159 0.99943 1.20633 0.80893 1.00810 1.01258 1.84472 1.25940 1.47785 1.49852 1.26052 0.96162 0.90382 0.90611 1.15930 0.80969 0.81072 0.81064 1.43304 1.06262 1.42984 1.43892 1.90932 1.85703 1.31465 1.32099 1.70167 0.98831 1.23821 1.23589 1.19743 0.95530 0.98032 0.98495 1.20475 0.89291 0.99154 0.98485 0.92022 0.86049 0.83722 0.83070 0.83784 0.85091 0.82256 0.74296 0.73068 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.75 13.67 21.61 0.30 -51.46 16 2 C -0.01 -0.60 5.49 84.83 0.47 -0.14 16 3 Si 1.01 40.77 29.55 68.60 2.03 42.80 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.41 -22.34 9.49 67.92 0.64 -21.70 16 8 H 0.10 4.94 5.21 -2.91 -0.02 4.93 16 9 O -0.21 -11.29 8.09 -21.73 -0.18 -11.47 16 10 C 0.13 6.07 6.55 22.81 0.15 6.22 16 11 C -0.25 -9.97 9.16 22.36 0.20 -9.77 16 12 C -0.06 -1.99 10.03 22.29 0.22 -1.77 16 13 C -0.19 -5.42 10.03 22.27 0.22 -5.20 16 14 C -0.06 -1.78 9.50 22.47 0.21 -1.56 16 15 C -0.15 -5.78 5.48 -19.93 -0.11 -5.89 16 16 C -0.02 -0.60 5.27 -20.07 -0.11 -0.71 16 17 C -0.05 -1.78 8.70 22.30 0.19 -1.58 16 18 C -0.09 -3.08 9.99 22.03 0.22 -2.86 16 19 C 0.01 0.52 7.43 23.04 0.17 0.69 16 20 O -0.19 -5.56 10.49 -13.65 -0.14 -5.71 16 21 C 0.18 5.50 8.02 87.44 0.70 6.20 16 22 C 0.63 15.41 8.10 86.81 0.70 16.11 16 23 N -0.80 -9.69 8.87 -175.56 -1.56 -11.25 16 24 O -0.53 -16.63 17.89 -3.82 -0.07 -16.70 16 25 N -0.43 -15.81 11.24 -297.84 -3.35 -19.16 16 26 C 0.00 -0.16 7.21 39.70 0.29 0.13 16 27 C -0.06 -2.02 9.56 22.77 0.22 -1.80 16 28 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.14 3.69 8.04 -2.91 -0.02 3.67 16 33 H 0.13 5.51 7.66 -2.91 -0.02 5.49 16 34 H 0.16 4.57 8.06 -2.91 -0.02 4.55 16 35 H 0.42 3.35 8.56 -92.71 -0.79 2.56 16 36 H 0.43 2.94 8.93 -92.71 -0.83 2.12 16 37 H 0.15 4.89 8.04 -2.91 -0.02 4.87 16 Total: -1.00 -73.11 335.70 0.99 -72.12 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.44 Total: 24.45 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.40 Total: -23.62 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -4.61 Total: -81.87 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.39 Total: -33.88 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -73.11 0.99 -72.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.630 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds