Wall clock time and date at job start Tue Mar 31 2020 14:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86792 * 120.00321 * 2 1 4 4 H 1.48499 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47109 * 300.00073 * 3 2 1 6 6 H 1.48506 * 109.47324 * 59.99877 * 3 2 1 7 7 C 1.38660 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00137 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.35649 * 116.99735 * 185.06048 * 9 7 2 11 11 C 1.38762 * 120.14038 * 354.40264 * 10 9 7 12 12 C 1.38105 * 120.05460 * 180.02562 * 11 10 9 13 13 C 1.38478 * 120.33960 * 359.97438 * 12 11 10 14 14 C 1.37978 * 120.27820 * 359.97438 * 13 12 11 15 15 C 1.39361 * 119.94270 * 0.02562 * 14 13 12 16 16 C 1.48163 * 120.16897 * 179.97438 * 15 14 13 17 17 C 1.40029 * 119.86975 * 129.70174 * 16 15 14 18 18 C 1.36213 * 120.50255 * 179.77572 * 17 16 15 19 19 C 1.40165 * 119.99787 * 0.48260 * 18 17 16 20 20 N 1.34636 * 133.51025 * 179.75120 * 19 18 17 21 21 C 1.30735 * 109.00835 * 180.02562 * 20 19 18 22 22 C 1.47842 * 124.97633 * 179.97438 * 21 20 19 23 23 N 1.34774 * 119.99707 * 0.03750 * 22 21 20 24 24 O 1.21548 * 120.00106 * 180.02562 * 22 21 20 25 25 O 1.34782 * 110.04563 * 359.97438 * 21 20 19 26 26 C 1.34992 * 107.88076 * 359.97438 * 25 21 20 27 27 C 1.38462 * 133.84406 * 179.97438 * 26 25 21 28 28 H 0.97005 * 119.99506 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97197 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.83223 * 179.70640 * 12 11 10 31 31 H 1.07998 * 119.85913 * 179.97438 * 13 12 11 32 32 H 1.08001 * 120.02556 * 180.02562 * 14 13 12 33 33 H 1.08004 * 119.74920 * 0.02635 * 17 16 15 34 34 H 1.07996 * 119.99789 * 180.25642 * 18 17 16 35 35 H 0.97003 * 120.00052 * 359.97438 * 23 22 21 36 36 H 0.97005 * 119.99770 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.17128 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3683 0.0005 10 6 2.0693 -3.5036 0.1077 11 6 3.4554 -3.4404 0.0942 12 6 4.2016 -4.5974 0.2029 13 6 3.5739 -5.8256 0.3263 14 6 2.1965 -5.9044 0.3423 15 6 1.4321 -4.7442 0.2334 16 6 -0.0474 -4.8231 0.2495 17 6 -0.7804 -3.9986 1.1119 18 6 -2.1411 -4.0572 1.1340 19 6 -2.8175 -4.9548 0.2966 20 7 -4.1190 -5.2389 0.1009 21 6 -4.2189 -6.1730 -0.8082 22 6 -5.4902 -6.7511 -1.2932 23 7 -6.6630 -6.3155 -0.7921 24 8 -5.4777 -7.6190 -2.1441 25 8 -2.9930 -6.5318 -1.2386 26 6 -2.0853 -5.7894 -0.5700 27 6 -0.7026 -5.7187 -0.5893 28 1 -0.4850 0.8401 0.0004 29 1 3.9511 -2.4856 -0.0014 30 1 5.2802 -4.5445 0.1872 31 1 4.1650 -6.7255 0.4103 32 1 1.7112 -6.8643 0.4392 33 1 -0.2631 -3.3081 1.7616 34 1 -2.6984 -3.4146 1.7994 35 1 -6.6729 -5.6230 -0.1129 36 1 -7.4972 -6.6951 -1.1100 37 1 -0.1356 -6.3575 -1.2502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:57 Heat of formation + Delta-G solvation = 6.975374 kcal Electronic energy + Delta-G solvation = -25738.892154 eV Core-core repulsion = 21834.724199 eV Total energy + Delta-G solvation = -3904.167956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.18277 -39.62940 -39.36835 -37.57377 -36.43922 -35.09468 -33.80334 -32.46779 -31.52046 -30.44103 -29.24141 -28.25958 -25.52726 -25.21004 -23.06637 -22.38927 -21.44596 -21.33506 -20.59162 -18.52349 -18.12684 -17.88175 -17.21390 -16.85116 -16.78452 -16.36271 -15.39169 -14.78185 -14.73461 -14.61429 -14.39062 -14.14867 -13.86952 -13.68580 -13.60200 -13.17953 -12.77904 -12.21874 -12.19237 -11.82950 -11.62610 -11.38553 -11.28037 -10.99109 -10.88693 -10.85392 -10.81959 -10.53177 -10.43096 -10.14451 -9.53261 -8.99853 -8.72907 -8.49838 -7.93715 -7.29615 -6.59807 -4.18099 0.37723 1.54669 1.70473 2.02377 2.16671 2.24067 3.00315 3.04162 3.05896 3.11183 3.34588 3.83481 3.93067 3.97150 4.41490 4.65851 4.92538 4.97156 5.04133 5.18057 5.32809 5.44926 5.53701 5.65623 5.67069 5.91446 6.01909 6.07905 6.18951 6.27938 6.35536 6.45438 6.53629 6.65713 6.75563 6.79487 6.91100 6.96999 7.08840 7.20404 7.24394 7.50709 7.62049 7.79213 7.83417 8.85066 9.50156 10.56348 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003639 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.860672 B = 7691.630557 C = 9455.405626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.396 4.396 8 H 0.094 0.906 9 O -0.162 6.162 10 C 0.170 3.830 11 C -0.232 4.232 12 C -0.063 4.063 13 C -0.216 4.216 14 C -0.052 4.052 15 C -0.150 4.150 16 C 0.049 3.951 17 C -0.079 4.079 18 C -0.046 4.046 19 C 0.002 3.998 20 N -0.421 5.421 21 C 0.168 3.832 22 C 0.627 3.373 23 N -0.821 5.821 24 O -0.516 6.516 25 O -0.184 6.184 26 C 0.032 3.968 27 C -0.111 4.111 28 H 0.271 0.729 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.416 0.584 36 H 0.417 0.583 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -8.194 2.678 9.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.472 4.472 8 H 0.112 0.888 9 O -0.064 6.064 10 C 0.114 3.886 11 C -0.251 4.251 12 C -0.081 4.081 13 C -0.234 4.234 14 C -0.070 4.070 15 C -0.151 4.151 16 C 0.049 3.951 17 C -0.098 4.098 18 C -0.064 4.064 19 C -0.113 4.113 20 N -0.156 5.156 21 C -0.043 4.043 22 C 0.407 3.593 23 N -0.388 5.388 24 O -0.389 6.389 25 O -0.072 6.072 26 C -0.019 4.019 27 C -0.130 4.130 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.247 0.753 36 H 0.250 0.750 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.699 -8.283 2.343 10.324 hybrid contribution 0.805 0.840 -0.266 1.193 sum -4.894 -7.444 2.077 9.147 Atomic orbital electron populations 1.70040 1.05888 1.27848 1.44689 1.25284 0.95851 0.98817 0.96222 0.85658 0.79211 0.80292 0.78381 1.19038 1.20086 1.20023 1.21417 0.91954 0.80611 1.53178 0.88831 1.83963 1.34242 1.11344 1.76829 1.19258 0.90095 0.87208 0.92025 1.21138 0.93402 0.99296 1.11275 1.20884 0.98722 0.92331 0.96179 1.20544 0.94083 0.97156 1.11661 1.20752 0.93555 0.95834 0.96864 1.17669 0.90019 0.91626 1.15813 1.18541 0.92562 0.91958 0.92046 1.21007 0.92717 0.97649 0.98442 1.20019 0.93598 0.95697 0.97120 1.19621 0.87642 1.01955 1.02131 1.70055 1.20393 1.11532 1.13653 1.25083 0.86709 0.96497 0.96004 1.15988 0.81054 0.81202 0.81054 1.43289 1.06780 1.43848 1.44903 1.90922 1.86514 1.30434 1.31023 1.84567 1.14577 1.53362 1.54725 1.20410 0.92121 0.94205 0.95142 1.19856 0.87489 1.03033 1.02632 0.91856 0.85130 0.87216 0.87212 0.86619 0.83719 0.84497 0.75302 0.74989 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.09 13.67 55.48 0.76 -22.33 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.26 29.55 -169.99 -5.02 14.24 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 7 C -0.40 -10.13 9.49 30.89 0.29 -9.84 16 8 H 0.09 2.23 5.21 -52.49 -0.27 1.95 16 9 O -0.16 -4.14 8.11 0.42 0.00 -4.13 16 10 C 0.17 3.72 6.55 -38.71 -0.25 3.47 16 11 C -0.23 -4.60 9.16 -39.44 -0.36 -4.96 16 12 C -0.06 -1.05 10.03 -39.54 -0.40 -1.45 16 13 C -0.22 -3.39 10.03 -39.59 -0.40 -3.79 16 14 C -0.05 -0.86 9.49 -39.26 -0.37 -1.23 16 15 C -0.15 -2.90 5.47 -104.73 -0.57 -3.47 16 16 C 0.05 0.93 5.28 -104.83 -0.55 0.38 16 17 C -0.08 -1.49 8.70 -39.64 -0.34 -1.83 16 18 C -0.05 -0.80 10.04 -39.59 -0.40 -1.20 16 19 C 0.00 0.03 7.22 -84.93 -0.61 -0.58 16 20 N -0.42 -6.82 10.87 -9.34 -0.10 -6.92 16 21 C 0.17 2.68 8.03 -14.09 -0.11 2.56 16 22 C 0.63 8.36 8.10 -12.33 -0.10 8.26 16 23 N -0.82 -6.73 8.87 30.53 0.27 -6.46 16 24 O -0.52 -8.41 17.93 -1.03 -0.02 -8.43 16 25 O -0.18 -3.30 10.80 -3.90 -0.04 -3.34 16 26 C 0.03 0.59 7.42 -38.51 -0.29 0.30 16 27 C -0.11 -1.96 9.51 -39.18 -0.37 -2.33 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.13 2.58 5.64 -52.49 -0.30 2.29 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.62 8.04 -52.49 -0.42 1.20 16 33 H 0.15 2.86 7.69 -52.48 -0.40 2.46 16 34 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.42 2.87 8.47 -40.82 -0.35 2.53 16 36 H 0.42 2.26 8.93 -40.82 -0.36 1.90 16 37 H 0.14 2.13 8.03 -52.48 -0.42 1.71 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -30.94 335.63 -6.96 -37.90 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.93 Total: 9.11 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -4.94 Total: -14.69 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.93 Total: -35.71 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.06 Total: -15.90 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.94 -6.96 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.872 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds