Wall clock time and date at job start Tue Mar 31 2020 14:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86792 * 120.00321 * 2 1 4 4 H 1.48499 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47109 * 300.00073 * 3 2 1 6 6 H 1.48506 * 109.47324 * 59.99877 * 3 2 1 7 7 C 1.38660 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00137 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.35649 * 116.99735 * 185.06048 * 9 7 2 11 11 C 1.38762 * 120.14038 * 354.40264 * 10 9 7 12 12 C 1.38105 * 120.05460 * 180.02562 * 11 10 9 13 13 C 1.38478 * 120.33960 * 359.97438 * 12 11 10 14 14 C 1.37978 * 120.27820 * 359.97438 * 13 12 11 15 15 C 1.39361 * 119.94270 * 0.02562 * 14 13 12 16 16 C 1.48163 * 120.16897 * 179.97438 * 15 14 13 17 17 C 1.40029 * 119.86975 * 129.70174 * 16 15 14 18 18 C 1.36213 * 120.50255 * 179.77572 * 17 16 15 19 19 C 1.40165 * 119.99787 * 0.48260 * 18 17 16 20 20 N 1.34636 * 133.51025 * 179.75120 * 19 18 17 21 21 C 1.30735 * 109.00835 * 180.02562 * 20 19 18 22 22 C 1.47842 * 124.97633 * 179.97438 * 21 20 19 23 23 N 1.34774 * 119.99707 * 0.03750 * 22 21 20 24 24 O 1.21548 * 120.00106 * 180.02562 * 22 21 20 25 25 O 1.34782 * 110.04563 * 359.97438 * 21 20 19 26 26 C 1.34992 * 107.88076 * 359.97438 * 25 21 20 27 27 C 1.38462 * 133.84406 * 179.97438 * 26 25 21 28 28 H 0.97005 * 119.99506 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97197 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.83223 * 179.70640 * 12 11 10 31 31 H 1.07998 * 119.85913 * 179.97438 * 13 12 11 32 32 H 1.08001 * 120.02556 * 180.02562 * 14 13 12 33 33 H 1.08004 * 119.74920 * 0.02635 * 17 16 15 34 34 H 1.07996 * 119.99789 * 180.25642 * 18 17 16 35 35 H 0.97003 * 120.00052 * 359.97438 * 23 22 21 36 36 H 0.97005 * 119.99770 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.17128 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3683 0.0005 10 6 2.0693 -3.5036 0.1077 11 6 3.4554 -3.4404 0.0942 12 6 4.2016 -4.5974 0.2029 13 6 3.5739 -5.8256 0.3263 14 6 2.1965 -5.9044 0.3423 15 6 1.4321 -4.7442 0.2334 16 6 -0.0474 -4.8231 0.2495 17 6 -0.7804 -3.9986 1.1119 18 6 -2.1411 -4.0572 1.1340 19 6 -2.8175 -4.9548 0.2966 20 7 -4.1190 -5.2389 0.1009 21 6 -4.2189 -6.1730 -0.8082 22 6 -5.4902 -6.7511 -1.2932 23 7 -6.6630 -6.3155 -0.7921 24 8 -5.4777 -7.6190 -2.1441 25 8 -2.9930 -6.5318 -1.2386 26 6 -2.0853 -5.7894 -0.5700 27 6 -0.7026 -5.7187 -0.5893 28 1 -0.4850 0.8401 0.0004 29 1 3.9511 -2.4856 -0.0014 30 1 5.2802 -4.5445 0.1872 31 1 4.1650 -6.7255 0.4103 32 1 1.7112 -6.8643 0.4392 33 1 -0.2631 -3.3081 1.7616 34 1 -2.6984 -3.4146 1.7994 35 1 -6.6729 -5.6230 -0.1129 36 1 -7.4972 -6.6951 -1.1100 37 1 -0.1356 -6.3575 -1.2502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:56 Heat of formation + Delta-G solvation = -15.701530 kcal Electronic energy + Delta-G solvation = -25739.875499 eV Core-core repulsion = 21834.724199 eV Total energy + Delta-G solvation = -3905.151300 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.54471 -41.03868 -40.59425 -39.05396 -37.95749 -36.38964 -34.83696 -34.27395 -32.92710 -31.85542 -30.70089 -29.66335 -27.32959 -26.49260 -24.49466 -23.78047 -22.84647 -22.76115 -21.86623 -19.82990 -19.66118 -19.25734 -18.60627 -18.19343 -17.88118 -17.80328 -16.79572 -16.36611 -16.09650 -15.86370 -15.72733 -15.58354 -15.28327 -15.20035 -15.04684 -14.63300 -14.37657 -13.64914 -13.61703 -13.52871 -13.11178 -12.82123 -12.72564 -12.47885 -12.38586 -12.22689 -12.09289 -11.99873 -11.80700 -11.19771 -11.04055 -10.79257 -10.15073 -9.92177 -9.36727 -8.84172 -8.44053 -6.10061 -0.94303 0.10531 0.35117 0.72665 0.78785 0.88477 1.37916 1.44376 1.53743 1.79215 2.06226 2.17619 2.49590 2.86615 2.95669 3.19483 3.30825 3.44768 3.63186 3.83040 3.96328 4.04918 4.20095 4.25914 4.31493 4.56559 4.64610 4.67574 4.77938 4.95287 5.00333 5.10068 5.14454 5.27175 5.36924 5.40324 5.54057 5.67228 5.69945 5.76897 5.88805 6.03256 6.21072 6.24316 6.89283 7.00818 7.78002 8.76645 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003639 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.860672 B = 7691.630557 C = 9455.405626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.012 4.012 3 Si 1.009 2.991 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.207 6.207 10 C 0.135 3.865 11 C -0.248 4.248 12 C -0.060 4.060 13 C -0.192 4.192 14 C -0.052 4.052 15 C -0.154 4.154 16 C 0.032 3.968 17 C -0.090 4.090 18 C -0.046 4.046 19 C -0.007 4.007 20 N -0.419 5.419 21 C 0.175 3.825 22 C 0.629 3.371 23 N -0.786 5.786 24 O -0.547 6.547 25 O -0.194 6.194 26 C 0.017 3.983 27 C -0.103 4.103 28 H 0.271 0.729 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.426 0.574 36 H 0.434 0.566 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -10.168 2.766 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.211 4.211 3 Si 0.829 3.171 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.112 6.112 10 C 0.083 3.917 11 C -0.267 4.267 12 C -0.078 4.078 13 C -0.211 4.211 14 C -0.070 4.070 15 C -0.155 4.155 16 C 0.032 3.968 17 C -0.110 4.110 18 C -0.065 4.065 19 C -0.122 4.122 20 N -0.153 5.153 21 C -0.036 4.036 22 C 0.408 3.592 23 N -0.354 5.354 24 O -0.423 6.423 25 O -0.083 6.083 26 C -0.034 4.034 27 C -0.121 4.121 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.143 0.857 34 H 0.170 0.830 35 H 0.259 0.741 36 H 0.271 0.729 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.975 -10.283 2.467 11.687 hybrid contribution 0.576 1.100 -0.266 1.270 sum -4.399 -9.183 2.200 10.418 Atomic orbital electron populations 1.70175 1.07639 1.28487 1.48006 1.26360 0.96697 1.02152 0.95922 0.84651 0.78442 0.75657 0.78305 1.17609 1.19956 1.19506 1.21813 0.92495 0.81410 1.53187 0.88169 1.83949 1.35245 1.12040 1.79962 1.19810 0.91295 0.87285 0.93277 1.21282 0.92883 1.00472 1.12080 1.21300 1.00470 0.91466 0.94593 1.21112 0.93995 0.98270 1.07692 1.21188 0.94152 0.96030 0.95647 1.17992 0.90589 0.91757 1.15173 1.18612 0.92703 0.92695 0.92811 1.20914 0.93377 0.97752 0.98921 1.20129 0.93226 0.95784 0.97313 1.19770 0.88438 1.01898 1.02065 1.70062 1.19389 1.11816 1.14012 1.25873 0.87083 0.95652 0.95040 1.15911 0.81213 0.81041 0.81032 1.43119 1.05861 1.42802 1.43642 1.90918 1.86675 1.32027 1.32677 1.84568 1.15217 1.53571 1.54975 1.20544 0.92532 0.94686 0.95608 1.19971 0.87546 1.02532 1.02088 0.92014 0.86026 0.83643 0.82918 0.83478 0.85672 0.82961 0.74087 0.72869 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.11 13.67 21.61 0.30 -51.82 16 2 C -0.01 -0.64 5.49 84.84 0.47 -0.18 16 3 Si 1.01 40.85 29.55 68.60 2.03 42.87 16 4 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.41 -22.28 9.49 67.92 0.64 -21.63 16 8 H 0.10 4.99 5.21 -2.91 -0.02 4.98 16 9 O -0.21 -11.23 8.11 -21.40 -0.17 -11.40 16 10 C 0.14 6.12 6.55 22.83 0.15 6.27 16 11 C -0.25 -9.83 9.16 22.36 0.20 -9.62 16 12 C -0.06 -1.83 10.03 22.30 0.22 -1.61 16 13 C -0.19 -5.22 10.03 22.27 0.22 -5.00 16 14 C -0.05 -1.58 9.49 22.48 0.21 -1.37 16 15 C -0.15 -5.95 5.47 -19.93 -0.11 -6.06 16 16 C 0.03 1.24 5.28 -20.00 -0.11 1.13 16 17 C -0.09 -3.58 8.70 22.23 0.19 -3.39 16 18 C -0.05 -1.66 10.04 22.27 0.22 -1.44 16 19 C -0.01 -0.26 7.22 39.82 0.29 0.03 16 20 N -0.42 -13.21 10.87 -297.57 -3.23 -16.44 16 21 C 0.18 5.41 8.03 87.40 0.70 6.11 16 22 C 0.63 15.76 8.10 86.79 0.70 16.46 16 23 N -0.79 -10.94 8.87 -175.61 -1.56 -12.50 16 24 O -0.55 -17.16 17.93 2.21 0.04 -17.12 16 25 O -0.19 -6.84 10.80 -8.06 -0.09 -6.93 16 26 C 0.02 0.62 7.42 22.96 0.17 0.79 16 27 C -0.10 -3.59 9.51 22.53 0.21 -3.38 16 28 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.12 4.93 5.64 -2.91 -0.02 4.91 16 30 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.15 3.52 8.04 -2.91 -0.02 3.50 16 33 H 0.13 5.41 7.69 -2.91 -0.02 5.38 16 34 H 0.15 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.43 4.76 8.47 -92.71 -0.78 3.98 16 36 H 0.43 3.47 8.93 -92.70 -0.83 2.64 16 37 H 0.16 4.67 8.03 -2.91 -0.02 4.64 16 Total: -1.00 -71.47 335.63 1.28 -70.19 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.43 Total: 26.02 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.40 Total: -22.87 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -4.50 Total: -80.76 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.22 Total: -35.45 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -71.47 1.28 -70.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.488 kcal (2) G-P(sol) polarization free energy of solvation -71.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds