Wall clock time and date at job start Tue Mar 31 2020 14:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86797 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47591 * 270.00177 * 3 2 1 5 5 H 1.48502 * 109.47268 * 30.00945 * 3 2 1 6 6 H 1.48506 * 109.46998 * 150.00093 * 3 2 1 7 7 C 1.38665 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00104 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.35679 * 116.99706 * 185.05849 * 9 7 2 11 11 C 1.39008 * 119.94834 * 354.44486 * 10 9 7 12 12 C 1.37818 * 120.05585 * 180.02562 * 11 10 9 13 13 C 1.39463 * 119.94529 * 359.97167 * 12 11 10 14 14 C 1.48268 * 120.05312 * 179.97438 * 13 12 11 15 15 C 1.39105 * 119.69541 * 180.02562 * 14 13 12 16 16 C 1.39218 * 118.96909 * 179.74938 * 15 14 13 17 17 N 1.39207 * 120.81663 * 180.27439 * 16 15 14 18 18 C 1.39602 * 118.36449 * 0.25168 * 16 15 14 19 19 C 1.37935 * 119.28553 * 359.97438 * 18 16 15 20 20 C 1.50698 * 119.51171 * 180.02562 * 19 18 16 21 21 F 1.39892 * 109.47446 * 89.99875 * 20 19 18 22 22 F 1.39899 * 109.47260 * 210.00453 * 20 19 18 23 23 F 1.39899 * 109.46838 * 329.99622 * 20 19 18 24 24 N 1.31892 * 120.98028 * 0.02562 * 19 18 16 25 25 C 1.39466 * 119.89373 * 0.26075 * 13 12 11 26 26 C 1.37823 * 119.94155 * 359.48982 * 25 13 12 27 27 H 0.97003 * 119.99512 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.97286 * 0.02562 * 11 10 9 29 29 H 1.07997 * 120.02805 * 180.02562 * 12 11 10 30 30 H 1.08000 * 120.51701 * 0.02562 * 15 14 13 31 31 H 0.96996 * 120.00474 * 359.97438 * 17 16 15 32 32 H 0.97008 * 119.99693 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.36217 * 179.97438 * 18 16 15 34 34 H 1.07998 * 120.02742 * 179.74427 * 25 13 12 35 35 H 1.08004 * 119.96929 * 180.25784 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0694 -3.5040 0.1045 11 6 3.4578 -3.4360 0.0915 12 6 4.2063 -4.5882 0.1986 13 6 3.5698 -5.8231 0.3208 14 6 4.3728 -7.0642 0.4356 15 6 3.7302 -8.2920 0.5566 16 6 4.4989 -9.4483 0.6581 17 7 3.8959 -10.6975 0.7750 18 6 5.8892 -9.3241 0.6393 19 6 6.4532 -8.0709 0.5212 20 6 7.9535 -7.9310 0.4998 21 9 8.4103 -8.0081 -0.8202 22 9 8.3146 -6.6951 1.0469 23 9 8.5285 -8.9601 1.2532 24 7 5.6989 -6.9931 0.4268 25 6 2.1767 -5.8892 0.3287 26 6 1.4326 -4.7337 0.2265 27 1 -0.4849 0.8401 0.0004 28 1 3.9503 -2.4795 -0.0027 29 1 5.2849 -4.5348 0.1888 30 1 2.6517 -8.3478 0.5670 31 1 2.9287 -10.7701 0.7868 32 1 4.4430 -11.4955 0.8453 33 1 6.5166 -10.1998 0.7163 34 1 1.6816 -6.8448 0.4191 35 1 0.3538 -4.7840 0.2368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:40 Heat of formation + Delta-G solvation = -116.590321 kcal Electronic energy + Delta-G solvation = -25864.936300 eV Core-core repulsion = 21413.553393 eV Total energy + Delta-G solvation = -4451.382907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.17793 -47.73928 -47.59492 -40.43628 -38.99728 -36.69747 -35.62054 -32.80354 -32.13973 -30.58031 -29.80481 -28.60119 -26.48784 -25.59912 -23.44942 -22.73462 -21.51025 -20.79752 -18.67793 -18.57203 -18.51838 -18.12735 -17.40240 -16.99712 -16.30872 -15.94401 -15.14118 -14.82180 -14.66058 -14.48868 -14.40369 -14.20195 -14.19123 -14.08664 -13.81038 -13.77544 -13.73171 -13.61711 -12.93736 -12.79535 -12.46521 -12.03607 -11.89549 -11.78720 -11.41673 -11.10438 -11.01557 -10.72713 -10.51320 -9.67193 -9.51335 -9.37404 -8.85593 -8.33149 -8.30025 -7.18476 -6.60313 -4.15626 0.65967 1.21987 2.17351 2.30710 2.44276 3.07318 3.08766 3.13706 3.35005 3.53502 3.64616 3.86883 3.98256 4.37413 4.54285 4.59182 4.79395 4.97469 4.99105 5.06043 5.16340 5.42006 5.58150 5.60874 5.73353 5.83354 6.08787 6.28933 6.34294 6.55438 6.82171 6.92685 6.98516 7.11951 7.25625 7.31199 7.32158 7.66825 7.85504 7.93740 8.84947 9.51470 10.56465 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.002888 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.639273 B = 9692.533152 C =11102.525499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.391 4.391 8 H 0.097 0.903 9 O -0.165 6.165 10 C 0.168 3.832 11 C -0.244 4.244 12 C -0.017 4.017 13 C -0.172 4.172 14 C 0.256 3.744 15 C -0.235 4.235 16 C 0.260 3.740 17 N -0.863 5.863 18 C -0.231 4.231 19 C 0.091 3.909 20 C 0.523 3.477 21 F -0.173 7.173 22 F -0.164 7.164 23 F -0.176 7.176 24 N -0.493 5.493 25 C -0.043 4.043 26 C -0.198 4.198 27 H 0.273 0.727 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.404 0.596 32 H 0.402 0.598 33 H 0.138 0.862 34 H 0.116 0.884 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 -19.238 1.536 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.467 4.467 8 H 0.115 0.885 9 O -0.066 6.066 10 C 0.112 3.888 11 C -0.263 4.263 12 C -0.036 4.036 13 C -0.174 4.174 14 C 0.123 3.877 15 C -0.261 4.261 16 C 0.146 3.854 17 N -0.402 5.402 18 C -0.258 4.258 19 C -0.050 4.050 20 C 0.467 3.533 21 F -0.155 7.155 22 F -0.145 7.145 23 F -0.157 7.157 24 N -0.205 5.205 25 C -0.062 4.062 26 C -0.217 4.217 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.233 0.767 32 H 0.231 0.769 33 H 0.156 0.844 34 H 0.134 0.866 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.413 -18.131 1.438 20.479 hybrid contribution 0.183 -0.414 0.094 0.462 sum 9.595 -18.545 1.532 20.936 Atomic orbital electron populations 1.70035 1.06104 1.28145 1.44475 1.25374 0.95897 0.99107 0.96085 0.85658 0.79048 0.79576 0.78929 1.19663 1.20108 1.18903 1.21471 0.92135 0.80576 1.52529 0.88524 1.83936 1.34880 1.11753 1.75996 1.19549 0.90376 0.87897 0.91019 1.21156 0.93564 0.99176 1.12403 1.20925 0.99456 0.90759 0.92452 1.17840 0.91861 0.90484 1.17261 1.19473 0.87262 0.92258 0.88739 1.21644 1.01183 0.91286 1.11937 1.17653 0.91162 0.86495 0.90044 1.42328 1.09914 1.04899 1.83043 1.20971 0.93893 0.97924 1.13015 1.20387 0.92307 0.90767 1.01537 1.17952 0.87361 0.74037 0.73923 1.93221 1.90373 1.95972 1.35890 1.93237 1.92883 1.42849 1.85499 1.93180 1.86355 1.59604 1.76607 1.67212 1.06456 1.30072 1.16763 1.20635 0.92054 0.97004 0.96542 1.20092 0.99672 0.89989 1.11977 0.91694 0.85076 0.85895 0.84075 0.76663 0.76944 0.84444 0.86588 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.12 13.67 55.48 0.76 -23.36 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.85 29.55 -169.99 -5.02 14.82 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.53 9.48 30.89 0.29 -10.24 16 8 H 0.10 2.41 5.19 -52.49 -0.27 2.14 16 9 O -0.16 -4.50 9.75 0.31 0.00 -4.49 16 10 C 0.17 3.89 6.65 -39.01 -0.26 3.63 16 11 C -0.24 -5.22 9.15 -39.45 -0.36 -5.58 16 12 C -0.02 -0.33 9.56 -39.28 -0.38 -0.70 16 13 C -0.17 -3.06 5.88 -104.86 -0.62 -3.68 16 14 C 0.26 4.06 6.73 -83.00 -0.56 3.51 16 15 C -0.24 -2.94 9.34 -38.90 -0.36 -3.31 16 16 C 0.26 2.73 6.81 -83.64 -0.57 2.16 16 17 N -0.86 -5.47 9.08 32.51 0.30 -5.17 16 18 C -0.23 -2.61 9.31 -39.18 -0.36 -2.98 16 19 C 0.09 1.27 6.29 -82.68 -0.52 0.75 16 20 C 0.52 6.85 3.43 36.00 0.12 6.97 16 21 F -0.17 -2.28 17.30 2.25 0.04 -2.24 16 22 F -0.16 -2.38 17.03 2.25 0.04 -2.34 16 23 F -0.18 -2.03 16.43 2.25 0.04 -1.99 16 24 N -0.49 -8.05 9.02 -6.14 -0.06 -8.10 16 25 C -0.04 -0.73 9.41 -39.28 -0.37 -1.10 16 26 C -0.20 -3.92 9.98 -39.45 -0.39 -4.32 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.13 2.80 5.62 -52.49 -0.30 2.50 16 29 H 0.12 2.25 7.53 -52.49 -0.40 1.86 16 30 H 0.14 1.46 6.18 -52.49 -0.32 1.14 16 31 H 0.40 1.87 8.86 -40.82 -0.36 1.51 16 32 H 0.40 1.70 8.86 -40.82 -0.36 1.34 16 33 H 0.14 1.20 7.58 -52.49 -0.40 0.80 16 34 H 0.12 1.52 6.17 -52.49 -0.32 1.19 16 35 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -30.51 323.02 -5.76 -36.27 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -2.29 Total: 5.61 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -4.43 Total: -13.88 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 1.00 Total: -36.63 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: 0.00 Total: -4.49 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.51 -5.76 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.316 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds