Wall clock time and date at job start Tue Mar 31 2020 14:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86797 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47591 * 270.00177 * 3 2 1 5 5 H 1.48502 * 109.47268 * 30.00945 * 3 2 1 6 6 H 1.48506 * 109.46998 * 150.00093 * 3 2 1 7 7 C 1.38665 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00104 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.35679 * 116.99706 * 185.05849 * 9 7 2 11 11 C 1.39008 * 119.94834 * 354.44486 * 10 9 7 12 12 C 1.37818 * 120.05585 * 180.02562 * 11 10 9 13 13 C 1.39463 * 119.94529 * 359.97167 * 12 11 10 14 14 C 1.48268 * 120.05312 * 179.97438 * 13 12 11 15 15 C 1.39105 * 119.69541 * 180.02562 * 14 13 12 16 16 C 1.39218 * 118.96909 * 179.74938 * 15 14 13 17 17 N 1.39207 * 120.81663 * 180.27439 * 16 15 14 18 18 C 1.39602 * 118.36449 * 0.25168 * 16 15 14 19 19 C 1.37935 * 119.28553 * 359.97438 * 18 16 15 20 20 C 1.50698 * 119.51171 * 180.02562 * 19 18 16 21 21 F 1.39892 * 109.47446 * 89.99875 * 20 19 18 22 22 F 1.39899 * 109.47260 * 210.00453 * 20 19 18 23 23 F 1.39899 * 109.46838 * 329.99622 * 20 19 18 24 24 N 1.31892 * 120.98028 * 0.02562 * 19 18 16 25 25 C 1.39466 * 119.89373 * 0.26075 * 13 12 11 26 26 C 1.37823 * 119.94155 * 359.48982 * 25 13 12 27 27 H 0.97003 * 119.99512 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.97286 * 0.02562 * 11 10 9 29 29 H 1.07997 * 120.02805 * 180.02562 * 12 11 10 30 30 H 1.08000 * 120.51701 * 0.02562 * 15 14 13 31 31 H 0.96996 * 120.00474 * 359.97438 * 17 16 15 32 32 H 0.97008 * 119.99693 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.36217 * 179.97438 * 18 16 15 34 34 H 1.07998 * 120.02742 * 179.74427 * 25 13 12 35 35 H 1.08004 * 119.96929 * 180.25784 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0694 -3.5040 0.1045 11 6 3.4578 -3.4360 0.0915 12 6 4.2063 -4.5882 0.1986 13 6 3.5698 -5.8231 0.3208 14 6 4.3728 -7.0642 0.4356 15 6 3.7302 -8.2920 0.5566 16 6 4.4989 -9.4483 0.6581 17 7 3.8959 -10.6975 0.7750 18 6 5.8892 -9.3241 0.6393 19 6 6.4532 -8.0709 0.5212 20 6 7.9535 -7.9310 0.4998 21 9 8.4103 -8.0081 -0.8202 22 9 8.3146 -6.6951 1.0469 23 9 8.5285 -8.9601 1.2532 24 7 5.6989 -6.9931 0.4268 25 6 2.1767 -5.8892 0.3287 26 6 1.4326 -4.7337 0.2265 27 1 -0.4849 0.8401 0.0004 28 1 3.9503 -2.4795 -0.0027 29 1 5.2849 -4.5348 0.1888 30 1 2.6517 -8.3478 0.5670 31 1 2.9287 -10.7701 0.7868 32 1 4.4430 -11.4955 0.8453 33 1 6.5166 -10.1998 0.7163 34 1 1.6816 -6.8448 0.4191 35 1 0.3538 -4.7840 0.2368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:39 Heat of formation + Delta-G solvation = -136.494403 kcal Electronic energy + Delta-G solvation = -25865.799406 eV Core-core repulsion = 21413.553393 eV Total energy + Delta-G solvation = -4452.246012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.19952 -48.72733 -48.66559 -41.53952 -40.61552 -38.26899 -36.50247 -34.46277 -33.57208 -32.02285 -30.79540 -30.03851 -27.54021 -27.43811 -24.73852 -23.98757 -22.83796 -22.17588 -20.00222 -19.60553 -19.57613 -19.55019 -18.79101 -18.19188 -17.36008 -17.01793 -16.41000 -16.14933 -16.00831 -15.72746 -15.59600 -15.53324 -15.38279 -15.17565 -15.12439 -15.08568 -14.82914 -14.80779 -14.51448 -14.23058 -13.67020 -13.56412 -13.23182 -13.06639 -12.77664 -12.55133 -12.47429 -12.27802 -12.12939 -11.26088 -10.96840 -10.64345 -10.46626 -9.85613 -9.07626 -8.78410 -8.50844 -6.17336 -0.42607 0.15137 0.59223 0.93390 1.36155 1.43098 1.44737 1.52984 2.16416 2.46913 2.47657 2.65145 2.89912 2.99919 3.18969 3.39817 3.41884 3.47141 3.88080 3.97537 4.09898 4.14110 4.25596 4.36755 4.51321 4.63438 4.78481 4.86201 4.95487 5.12302 5.24199 5.31353 5.59019 5.66584 5.68125 5.99111 6.09404 6.30514 6.84687 6.86066 6.93973 7.70299 8.71270 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.002888 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.639273 B = 9692.533152 C =11102.525499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.016 2.984 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.417 4.417 8 H 0.102 0.898 9 O -0.219 6.219 10 C 0.132 3.868 11 C -0.250 4.250 12 C -0.030 4.030 13 C -0.148 4.148 14 C 0.225 3.775 15 C -0.225 4.225 16 C 0.269 3.731 17 N -0.838 5.838 18 C -0.214 4.214 19 C 0.070 3.930 20 C 0.525 3.475 21 F -0.175 7.175 22 F -0.177 7.177 23 F -0.165 7.165 24 N -0.525 5.525 25 C -0.030 4.030 26 C -0.201 4.201 27 H 0.275 0.725 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.168 0.832 31 H 0.417 0.583 32 H 0.417 0.583 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.675 -23.571 1.994 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.215 4.215 3 Si 0.835 3.165 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.124 6.124 10 C 0.080 3.920 11 C -0.269 4.269 12 C -0.048 4.048 13 C -0.150 4.150 14 C 0.090 3.910 15 C -0.250 4.250 16 C 0.153 3.847 17 N -0.378 5.378 18 C -0.240 4.240 19 C -0.070 4.070 20 C 0.470 3.530 21 F -0.157 7.157 22 F -0.158 7.158 23 F -0.146 7.146 24 N -0.238 5.238 25 C -0.049 4.049 26 C -0.220 4.220 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.146 0.854 30 H 0.185 0.815 31 H 0.249 0.751 32 H 0.248 0.752 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.693 -22.579 1.902 25.056 hybrid contribution 0.056 0.213 0.005 0.220 sum 10.750 -22.366 1.907 24.888 Atomic orbital electron populations 1.70160 1.07910 1.29025 1.47959 1.26548 0.96833 1.02603 0.95545 0.84620 0.77846 0.74674 0.79332 1.18743 1.19356 1.17894 1.21850 0.92612 0.81371 1.53406 0.88092 1.83916 1.35963 1.12612 1.79910 1.20093 0.91217 0.88232 0.92444 1.21181 0.93319 0.99702 1.12713 1.21030 0.99705 0.90938 0.93163 1.18250 0.92723 0.90992 1.13005 1.19292 0.87350 0.92429 0.91898 1.21832 1.02554 0.90498 1.10124 1.17639 0.90788 0.87508 0.88808 1.42332 1.10981 1.03822 1.80622 1.21330 0.94770 0.97823 1.10122 1.20536 0.92273 0.91343 1.02845 1.17934 0.87404 0.73824 0.73857 1.93216 1.90416 1.95957 1.36077 1.93211 1.93005 1.43865 1.85704 1.93198 1.86194 1.58927 1.76296 1.67023 1.07067 1.31860 1.17852 1.21065 0.91555 0.97916 0.94346 1.20419 1.00521 0.89754 1.11340 0.91606 0.86188 0.85391 0.81490 0.75108 0.75185 0.81447 0.81574 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.91 13.67 21.62 0.30 -54.61 16 2 C -0.02 -0.93 5.49 84.84 0.47 -0.47 16 3 Si 1.02 42.59 29.55 68.60 2.03 44.62 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.42 -24.02 9.48 67.92 0.64 -23.37 16 8 H 0.10 5.42 5.19 -2.91 -0.02 5.40 16 9 O -0.22 -12.85 9.75 -21.79 -0.21 -13.07 16 10 C 0.13 6.44 6.65 22.64 0.15 6.59 16 11 C -0.25 -11.24 9.15 22.36 0.20 -11.03 16 12 C -0.03 -1.15 9.56 22.47 0.21 -0.93 16 13 C -0.15 -4.99 5.88 -20.02 -0.12 -5.11 16 14 C 0.22 6.47 6.73 41.87 0.28 6.75 16 15 C -0.23 -4.51 9.34 22.71 0.21 -4.29 16 16 C 0.27 4.18 6.81 38.54 0.26 4.44 16 17 N -0.84 -5.33 9.08 -51.05 -0.46 -5.80 16 18 C -0.21 -3.82 9.31 22.53 0.21 -3.61 16 19 C 0.07 1.75 6.29 42.48 0.27 2.02 16 20 C 0.53 12.72 3.43 71.24 0.24 12.96 16 21 F -0.18 -4.32 17.30 44.97 0.78 -3.54 16 22 F -0.18 -5.00 17.03 44.97 0.77 -4.23 16 23 F -0.16 -3.33 16.43 44.97 0.74 -2.59 16 24 N -0.52 -16.13 9.02 -173.33 -1.56 -17.69 16 25 C -0.03 -0.94 9.41 22.47 0.21 -0.73 16 26 C -0.20 -7.98 9.98 22.36 0.22 -7.76 16 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.12 5.53 5.62 -2.91 -0.02 5.51 16 29 H 0.13 4.78 7.53 -2.91 -0.02 4.76 16 30 H 0.17 2.38 6.18 -2.91 -0.02 2.36 16 31 H 0.42 1.15 8.86 -92.71 -0.82 0.33 16 32 H 0.42 0.85 8.86 -92.70 -0.82 0.03 16 33 H 0.17 1.95 7.58 -2.91 -0.02 1.93 16 34 H 0.17 3.46 6.17 -2.91 -0.02 3.44 16 35 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -73.19 323.02 5.41 -67.77 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.43 Total: 13.69 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 3.47 Total: -24.55 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.73 Total: -78.10 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.21 Total: -13.07 kcal Atomic # 9 Polarization: -12.65 SS G_CDS: 2.28 Total: -10.37 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.19 5.41 -67.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.722 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds