Wall clock time and date at job start Tue Mar 31 2020 13:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86800 * 120.00401 * 2 1 4 4 H 1.48499 * 109.47388 * 239.99954 * 3 2 1 5 5 H 1.48493 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46888 * 119.99752 * 3 2 1 7 7 C 1.38655 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00182 * 180.02562 * 7 2 1 9 9 O 1.34819 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.35690 * 116.99879 * 185.05726 * 9 7 2 11 11 C 1.39000 * 119.94844 * 354.45583 * 10 9 7 12 12 C 1.37842 * 120.05375 * 179.97438 * 11 10 9 13 13 C 1.39439 * 119.94393 * 0.02562 * 12 11 10 14 14 C 1.48330 * 120.04973 * 179.97438 * 13 12 11 15 15 C 1.39426 * 120.09814 * 359.97438 * 14 13 12 16 16 C 1.38008 * 119.98273 * 179.72118 * 15 14 13 17 17 C 1.38258 * 120.18829 * 0.25987 * 16 15 14 18 18 C 1.38804 * 120.19424 * 0.02562 * 17 16 15 19 19 O 1.35904 * 119.99390 * 180.02562 * 18 17 16 20 20 C 1.42899 * 117.00011 * 0.02562 * 19 18 17 21 21 F 1.39899 * 109.47380 * 59.99309 * 20 19 18 22 22 F 1.39899 * 109.47097 * 180.02562 * 20 19 18 23 23 F 1.39904 * 109.46735 * 299.99678 * 20 19 18 24 24 C 1.38529 * 120.00979 * 359.97438 * 18 17 16 25 25 C 1.39432 * 119.89705 * 0.24882 * 13 12 11 26 26 C 1.37838 * 119.94875 * 359.46823 * 25 13 12 27 27 H 0.97002 * 119.99380 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.97840 * 359.97033 * 11 10 9 29 29 H 1.07995 * 120.03073 * 180.02562 * 12 11 10 30 30 H 1.08000 * 120.00330 * 359.97438 * 15 14 13 31 31 H 1.08010 * 119.90633 * 180.27590 * 16 15 14 32 32 H 1.08005 * 119.90428 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.08921 * 180.02562 * 24 18 17 34 34 H 1.07999 * 120.02276 * 179.72995 * 25 13 12 35 35 H 1.07995 * 119.97401 * 180.27520 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6962 1.2126 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3683 -0.0005 10 6 2.0695 -3.5040 0.1055 11 6 3.4578 -3.4360 0.0915 12 6 4.2065 -4.5883 0.1997 13 6 3.5701 -5.8229 0.3225 14 6 4.3735 -7.0644 0.4385 15 6 5.7662 -6.9999 0.4243 16 6 6.5113 -8.1559 0.5381 17 6 5.8808 -9.3802 0.6609 18 6 4.4948 -9.4538 0.6699 19 8 3.8793 -10.6594 0.7914 20 6 4.7206 -11.8088 0.9061 21 9 5.5293 -11.6835 2.0408 22 9 3.9290 -12.9565 1.0213 23 9 5.5272 -11.9116 -0.2324 24 6 3.7388 -8.2986 0.5562 25 6 2.1774 -5.8892 0.3305 26 6 1.4329 -4.7336 0.2280 27 1 -0.4849 0.8401 -0.0004 28 1 3.9503 -2.4797 -0.0041 29 1 5.2851 -4.5350 0.1892 30 1 6.2616 -6.0450 0.3284 31 1 7.5902 -8.1040 0.5314 32 1 6.4685 -10.2820 0.7501 33 1 2.6603 -8.3543 0.5635 34 1 1.6823 -6.8447 0.4212 35 1 0.3542 -4.7841 0.2387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590785.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:17 Heat of formation + Delta-G solvation = -170.518962 kcal Electronic energy + Delta-G solvation = -25600.349250 eV Core-core repulsion = 21114.335071 eV Total energy + Delta-G solvation = -4486.014179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.67694 -48.40500 -48.26363 -40.37603 -39.20866 -37.94355 -36.28493 -32.60525 -31.67049 -30.99475 -30.00690 -27.86144 -26.17954 -25.54539 -23.28525 -23.05776 -21.48382 -21.05106 -19.40721 -19.38533 -19.12065 -18.14758 -17.43894 -16.68262 -16.33227 -15.42589 -15.26153 -15.07257 -14.90817 -14.72557 -14.64814 -14.58976 -14.47854 -14.37291 -14.34618 -13.85057 -13.80397 -13.56732 -13.37845 -12.90447 -12.55215 -12.50277 -11.86972 -11.68786 -11.52407 -11.41219 -11.00427 -10.94428 -10.65013 -10.51582 -9.48743 -9.32562 -8.84189 -8.64582 -8.37087 -7.11596 -6.61503 -4.17736 0.89888 1.24214 1.29556 2.10421 2.33359 2.61596 3.04816 3.05928 3.09058 3.55819 3.60988 3.82818 3.84561 4.52777 4.55050 4.67244 4.93828 4.95743 5.02182 5.15350 5.21548 5.37085 5.52139 5.57998 5.88206 5.96252 6.05422 6.09708 6.26025 6.30599 6.50776 6.53437 6.74937 6.85180 6.95224 7.11630 7.21800 7.27934 7.63270 7.83171 8.83169 9.50259 10.55315 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.036296 B = 0.002218 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.250344 B =12618.364232 C =13207.273573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.166 6.166 10 C 0.163 3.837 11 C -0.237 4.237 12 C -0.045 4.045 13 C -0.171 4.171 14 C 0.042 3.958 15 C -0.149 4.149 16 C -0.071 4.071 17 C -0.217 4.217 18 C 0.109 3.891 19 O -0.311 6.311 20 C 0.604 3.396 21 F -0.166 7.166 22 F -0.135 7.135 23 F -0.166 7.166 24 C -0.139 4.139 25 C -0.051 4.051 26 C -0.194 4.194 27 H 0.274 0.726 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 -18.254 1.453 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.113 0.887 9 O -0.067 6.067 10 C 0.107 3.893 11 C -0.256 4.256 12 C -0.063 4.063 13 C -0.172 4.172 14 C 0.042 3.958 15 C -0.167 4.167 16 C -0.089 4.089 17 C -0.236 4.236 18 C 0.067 3.933 19 O -0.231 6.231 20 C 0.513 3.487 21 F -0.148 7.148 22 F -0.116 7.116 23 F -0.149 7.149 24 C -0.158 4.158 25 C -0.070 4.070 26 C -0.213 4.213 27 H 0.084 0.916 28 H 0.149 0.851 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.600 -18.069 1.435 20.997 hybrid contribution 0.715 0.446 0.031 0.843 sum 11.315 -17.623 1.466 20.994 Atomic orbital electron populations 1.70026 1.06085 1.28240 1.44427 1.25364 0.95896 0.99075 0.96135 0.85732 0.78754 0.79366 0.79361 1.19310 1.20126 1.19309 1.21379 0.91987 0.80646 1.52883 0.88723 1.83952 1.34740 1.11678 1.76364 1.19513 0.90325 0.87959 0.91507 1.21101 0.93691 0.98976 1.11863 1.20815 0.98539 0.91284 0.95683 1.18093 0.92635 0.91099 1.15364 1.18613 0.92623 0.91511 0.93056 1.21280 0.93192 0.98777 1.03428 1.20799 0.99875 0.91244 0.96993 1.21351 0.92193 1.00129 1.09918 1.18552 0.91612 0.81925 1.01176 1.86411 1.34739 1.13413 1.88559 1.19349 0.75149 0.79469 0.74738 1.93295 1.73703 1.95615 1.52223 1.93296 1.74961 1.47531 1.95835 1.93296 1.73828 1.95978 1.51753 1.20406 1.00428 0.88536 1.06391 1.20732 0.92526 0.97032 0.96670 1.20158 0.99794 0.90087 1.11240 0.91632 0.85136 0.86863 0.85125 0.85342 0.85535 0.84396 0.86502 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.03 13.67 55.48 0.76 -23.27 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.51 29.55 -169.99 -5.02 14.48 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.39 -10.44 9.48 30.89 0.29 -10.14 16 8 H 0.10 2.29 5.19 -52.49 -0.27 2.02 16 9 O -0.17 -4.50 9.75 0.26 0.00 -4.50 16 10 C 0.16 3.71 6.65 -39.02 -0.26 3.45 16 11 C -0.24 -4.81 9.15 -39.44 -0.36 -5.17 16 12 C -0.05 -0.77 9.42 -39.28 -0.37 -1.14 16 13 C -0.17 -2.85 5.88 -104.85 -0.62 -3.46 16 14 C 0.04 0.61 5.87 -104.92 -0.62 -0.01 16 15 C -0.15 -1.86 9.42 -39.22 -0.37 -2.23 16 16 C -0.07 -0.79 10.03 -39.66 -0.40 -1.18 16 17 C -0.22 -2.54 8.25 -39.36 -0.32 -2.86 16 18 C 0.11 1.40 6.48 -39.26 -0.25 1.15 16 19 O -0.31 -3.78 10.37 -19.44 -0.20 -3.98 16 20 C 0.60 6.19 3.42 101.05 0.35 6.54 16 21 F -0.17 -1.68 15.56 2.25 0.04 -1.64 16 22 F -0.13 -1.30 17.53 2.25 0.04 -1.27 16 23 F -0.17 -1.68 15.55 2.25 0.04 -1.64 16 24 C -0.14 -1.90 9.36 -39.09 -0.37 -2.27 16 25 C -0.05 -0.88 9.42 -39.28 -0.37 -1.25 16 26 C -0.19 -3.86 9.98 -39.44 -0.39 -4.26 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.13 2.62 5.62 -52.49 -0.30 2.32 16 29 H 0.11 1.60 6.19 -52.49 -0.33 1.27 16 30 H 0.13 1.45 6.19 -52.49 -0.33 1.12 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.13 1.30 5.08 -52.48 -0.27 1.03 16 33 H 0.14 1.74 6.20 -52.49 -0.33 1.42 16 34 H 0.12 1.65 6.20 -52.49 -0.33 1.33 16 35 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -28.41 316.73 -5.85 -34.26 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -2.12 Total: 4.63 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -4.16 Total: -21.86 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.76 Total: -23.27 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.20 Total: -8.47 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.11 Total: -4.55 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.41 -5.85 -34.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590785.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.256 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds